Experiment: m.b. Bacitracin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_39 and HP15_40 are separated by 430 nucleotides HP15_40 and HP15_41 are separated by 156 nucleotides HP15_41 and HP15_42 are separated by 478 nucleotides
HP15_39: HP15_39 - ring hydroxylating dioxygenase, alpha subunit, at 43,300 to 44,616
_39
HP15_40: HP15_40 - dioxygenase DitA oxygenase component small subunit-like protein, at 45,047 to 45,211
_40
HP15_41: HP15_41 - conserved hypothetical protein, at 45,368 to 45,718
_41
HP15_42: HP15_42 - short-chain dehydrogenase/reductase SDR, at 46,197 to 46,997
_42
Position (kb) 45
46 Strain fitness (log2 ratio) -2
-1
0
1 at 44.377 kb on + strand, within HP15_39 at 44.401 kb on - strand, within HP15_39 at 44.412 kb on + strand, within HP15_39 at 44.412 kb on + strand, within HP15_39 at 44.420 kb on - strand, within HP15_39 at 44.434 kb on + strand, within HP15_39 at 44.604 kb on - strand at 44.611 kb on + strand at 44.633 kb on + strand at 44.661 kb on - strand at 44.709 kb on + strand at 44.709 kb on + strand at 44.709 kb on + strand at 44.716 kb on - strand at 44.717 kb on - strand at 44.807 kb on + strand at 44.825 kb on + strand at 44.887 kb on - strand at 44.904 kb on + strand at 44.909 kb on + strand at 44.912 kb on - strand at 45.091 kb on - strand, within HP15_40 at 45.101 kb on - strand, within HP15_40 at 45.142 kb on - strand, within HP15_40 at 45.143 kb on - strand, within HP15_40 at 45.308 kb on - strand at 45.473 kb on - strand, within HP15_41 at 45.568 kb on + strand, within HP15_41 at 45.577 kb on - strand, within HP15_41 at 45.587 kb on - strand, within HP15_41 at 45.645 kb on + strand, within HP15_41 at 45.653 kb on - strand, within HP15_41 at 45.668 kb on - strand, within HP15_41 at 45.668 kb on - strand, within HP15_41 at 45.675 kb on - strand, within HP15_41 at 45.765 kb on + strand at 45.773 kb on + strand at 45.802 kb on - strand at 45.858 kb on - strand at 45.869 kb on + strand at 45.963 kb on + strand at 45.995 kb on + strand at 46.003 kb on - strand at 46.003 kb on - strand at 46.046 kb on - strand at 46.062 kb on + strand at 46.211 kb on + strand at 46.258 kb on + strand at 46.327 kb on - strand, within HP15_42 at 46.341 kb on + strand, within HP15_42 at 46.431 kb on + strand, within HP15_42 at 46.541 kb on + strand, within HP15_42 at 46.541 kb on + strand, within HP15_42 at 46.596 kb on + strand, within HP15_42 at 46.596 kb on + strand, within HP15_42 at 46.596 kb on + strand, within HP15_42 at 46.645 kb on - strand, within HP15_42
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.5 mg/ml remove 44,377 + HP15_39 0.82 -0.1 44,401 - HP15_39 0.84 +0.0 44,412 + HP15_39 0.84 -0.4 44,412 + HP15_39 0.84 -0.4 44,420 - HP15_39 0.85 +0.4 44,434 + HP15_39 0.86 -0.0 44,604 - +0.1 44,611 + +0.6 44,633 + -1.8 44,661 - +0.1 44,709 + -0.4 44,709 + -0.2 44,709 + -0.1 44,716 - -0.3 44,717 - -0.4 44,807 + -2.5 44,825 + +1.5 44,887 - -0.4 44,904 + +0.1 44,909 + -0.5 44,912 - -0.3 45,091 - HP15_40 0.27 -0.4 45,101 - HP15_40 0.33 +1.3 45,142 - HP15_40 0.58 +0.7 45,143 - HP15_40 0.58 -0.0 45,308 - -1.3 45,473 - HP15_41 0.30 -0.1 45,568 + HP15_41 0.57 -1.1 45,577 - HP15_41 0.60 -0.3 45,587 - HP15_41 0.62 -0.9 45,645 + HP15_41 0.79 -0.4 45,653 - HP15_41 0.81 -0.3 45,668 - HP15_41 0.85 -0.5 45,668 - HP15_41 0.85 -0.4 45,675 - HP15_41 0.87 -0.4 45,765 + -0.6 45,773 + +0.1 45,802 - +0.7 45,858 - +0.6 45,869 + -0.2 45,963 + -0.9 45,995 + +0.6 46,003 - -0.1 46,003 - -0.5 46,046 - +0.6 46,062 + -0.9 46,211 + -0.1 46,258 + -0.3 46,327 - HP15_42 0.16 +0.1 46,341 + HP15_42 0.18 -0.4 46,431 + HP15_42 0.29 -0.6 46,541 + HP15_42 0.43 -0.3 46,541 + HP15_42 0.43 -0.8 46,596 + HP15_42 0.50 -0.2 46,596 + HP15_42 0.50 +0.3 46,596 + HP15_42 0.50 +0.2 46,645 - HP15_42 0.56 -0.3
Or see this region's nucleotide sequence