Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c35980 and PGA1_c35990 overlap by 1 nucleotides PGA1_c35990 and PGA1_c36000 are separated by 24 nucleotides PGA1_c36000 and PGA1_c36010 are separated by 15 nucleotides PGA1_c36010 and PGA1_c36020 overlap by 4 nucleotides
PGA1_c35980: PGA1_c35980 - lipopolysaccharide export system ATP-binding protein LptB, at 3,766,950 to 3,767,708
_c35980
PGA1_c35990: PGA1_c35990 - OstA-like protein, similar to lipopolysaccharide export system protein LptA, at 3,767,708 to 3,768,187
_c35990
PGA1_c36000: PGA1_c36000 - Protein of unknown function (DUF1239)., at 3,768,212 to 3,768,811
_c36000
PGA1_c36010: PGA1_c36010 - arabinose 5-phosphate isomerase KdsD, at 3,768,827 to 3,769,798
_c36010
PGA1_c36020: PGA1_c36020 - putative 3'-5'-exonuclease, at 3,769,795 to 3,770,409
_c36020
Position (kb)
3768
3769 Strain fitness (log2 ratio)
-1
0
1 at 3768.832 kb on - strand at 3768.832 kb on - strand at 3768.832 kb on - strand at 3768.832 kb on - strand at 3769.801 kb on - strand at 3769.801 kb on - strand at 3769.801 kb on - strand at 3769.801 kb on - strand at 3769.801 kb on - strand at 3769.801 kb on - strand at 3769.801 kb on - strand at 3769.801 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 3,768,832 - -0.0 3,768,832 - +0.1 3,768,832 - +0.3 3,768,832 - -0.3 3,769,801 - +0.5 3,769,801 - -0.2 3,769,801 - -0.8 3,769,801 - +0.3 3,769,801 - -0.4 3,769,801 - -1.6 3,769,801 - -1.6 3,769,801 - -0.7
Or see this region's nucleotide sequence