Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03390

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03380 and PGA1_c03390 are separated by 394 nucleotidesPGA1_c03390 and PGA1_c03400 are separated by 205 nucleotides PGA1_c03380: PGA1_c03380 - putative glycine cleavage system transcriptional activator, at 324,276 to 325,157 _c03380 PGA1_c03390: PGA1_c03390 - acetoacetyl-CoA reductase PhaB, at 325,552 to 326,274 _c03390 PGA1_c03400: PGA1_c03400 - acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) (from data), at 326,480 to 327,655 _c03400 Position (kb) 325 326 327Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 324.557 kb on - strand, within PGA1_c03380at 324.557 kb on - strand, within PGA1_c03380at 324.571 kb on + strand, within PGA1_c03380at 324.573 kb on + strand, within PGA1_c03380at 324.615 kb on - strand, within PGA1_c03380at 324.618 kb on - strand, within PGA1_c03380at 324.623 kb on - strand, within PGA1_c03380at 324.680 kb on + strand, within PGA1_c03380at 324.718 kb on + strand, within PGA1_c03380at 324.726 kb on - strand, within PGA1_c03380at 324.726 kb on - strand, within PGA1_c03380at 324.726 kb on - strand, within PGA1_c03380at 324.755 kb on + strand, within PGA1_c03380at 324.763 kb on - strand, within PGA1_c03380at 324.768 kb on + strand, within PGA1_c03380at 324.815 kb on - strand, within PGA1_c03380at 324.820 kb on - strand, within PGA1_c03380at 324.820 kb on - strand, within PGA1_c03380at 324.912 kb on - strand, within PGA1_c03380at 324.951 kb on + strand, within PGA1_c03380at 324.951 kb on + strand, within PGA1_c03380at 324.959 kb on - strand, within PGA1_c03380at 324.959 kb on - strand, within PGA1_c03380at 324.959 kb on - strand, within PGA1_c03380at 324.959 kb on - strand, within PGA1_c03380at 324.959 kb on - strand, within PGA1_c03380at 324.966 kb on - strand, within PGA1_c03380at 324.966 kb on - strand, within PGA1_c03380at 324.984 kb on - strand, within PGA1_c03380at 325.045 kb on - strand, within PGA1_c03380at 325.072 kb on + strandat 325.131 kb on - strandat 325.155 kb on - strandat 325.194 kb on + strandat 325.317 kb on - strandat 325.343 kb on + strandat 325.377 kb on + strandat 325.400 kb on - strandat 325.407 kb on - strandat 325.421 kb on - strandat 325.448 kb on - strandat 325.519 kb on + strandat 325.624 kb on - strandat 325.634 kb on - strand, within PGA1_c03390at 325.634 kb on - strand, within PGA1_c03390at 325.762 kb on + strand, within PGA1_c03390at 325.770 kb on - strand, within PGA1_c03390at 325.791 kb on - strand, within PGA1_c03390at 325.807 kb on + strand, within PGA1_c03390at 325.840 kb on + strand, within PGA1_c03390at 325.843 kb on - strand, within PGA1_c03390at 325.845 kb on - strand, within PGA1_c03390at 325.922 kb on - strand, within PGA1_c03390at 325.922 kb on - strand, within PGA1_c03390at 325.937 kb on + strand, within PGA1_c03390at 325.937 kb on + strand, within PGA1_c03390at 325.945 kb on - strand, within PGA1_c03390at 325.945 kb on - strand, within PGA1_c03390at 325.945 kb on - strand, within PGA1_c03390at 325.945 kb on - strand, within PGA1_c03390at 325.947 kb on - strand, within PGA1_c03390at 325.968 kb on - strand, within PGA1_c03390at 325.988 kb on + strand, within PGA1_c03390at 326.071 kb on - strand, within PGA1_c03390at 326.087 kb on + strand, within PGA1_c03390at 326.094 kb on + strand, within PGA1_c03390at 326.094 kb on + strand, within PGA1_c03390at 326.095 kb on - strand, within PGA1_c03390at 326.191 kb on + strand, within PGA1_c03390at 326.192 kb on + strand, within PGA1_c03390at 326.192 kb on + strand, within PGA1_c03390at 326.192 kb on + strand, within PGA1_c03390at 326.199 kb on - strand, within PGA1_c03390at 326.199 kb on - strand, within PGA1_c03390at 326.200 kb on - strand, within PGA1_c03390at 326.200 kb on - strand, within PGA1_c03390at 326.238 kb on + strandat 326.366 kb on + strandat 326.374 kb on - strandat 326.450 kb on - strandat 326.461 kb on - strandat 326.478 kb on + strandat 326.496 kb on - strandat 326.530 kb on + strandat 326.540 kb on + strandat 326.611 kb on - strand, within PGA1_c03400at 326.675 kb on - strand, within PGA1_c03400at 326.685 kb on + strand, within PGA1_c03400at 326.690 kb on + strand, within PGA1_c03400at 326.690 kb on + strand, within PGA1_c03400at 326.690 kb on + strand, within PGA1_c03400at 326.690 kb on + strand, within PGA1_c03400at 326.690 kb on + strand, within PGA1_c03400at 326.690 kb on + strand, within PGA1_c03400at 326.690 kb on + strand, within PGA1_c03400at 326.690 kb on + strand, within PGA1_c03400at 326.693 kb on - strand, within PGA1_c03400at 326.693 kb on - strand, within PGA1_c03400at 326.693 kb on - strand, within PGA1_c03400at 326.698 kb on - strand, within PGA1_c03400at 326.698 kb on - strand, within PGA1_c03400at 326.698 kb on - strand, within PGA1_c03400at 326.698 kb on - strand, within PGA1_c03400at 326.698 kb on - strand, within PGA1_c03400at 326.698 kb on - strand, within PGA1_c03400at 326.698 kb on - strand, within PGA1_c03400at 326.698 kb on - strand, within PGA1_c03400at 326.698 kb on - strand, within PGA1_c03400at 326.698 kb on - strand, within PGA1_c03400at 326.698 kb on - strand, within PGA1_c03400at 326.759 kb on - strand, within PGA1_c03400at 326.763 kb on + strand, within PGA1_c03400at 326.779 kb on + strand, within PGA1_c03400at 326.788 kb on - strand, within PGA1_c03400at 326.806 kb on + strand, within PGA1_c03400at 326.843 kb on - strand, within PGA1_c03400at 326.848 kb on + strand, within PGA1_c03400at 326.856 kb on - strand, within PGA1_c03400at 326.872 kb on + strand, within PGA1_c03400at 326.882 kb on + strand, within PGA1_c03400at 326.888 kb on - strand, within PGA1_c03400at 326.898 kb on - strand, within PGA1_c03400at 326.944 kb on - strand, within PGA1_c03400at 327.026 kb on + strand, within PGA1_c03400at 327.034 kb on - strand, within PGA1_c03400at 327.058 kb on - strand, within PGA1_c03400at 327.058 kb on - strand, within PGA1_c03400at 327.102 kb on + strand, within PGA1_c03400at 327.102 kb on + strand, within PGA1_c03400at 327.147 kb on - strand, within PGA1_c03400at 327.178 kb on - strand, within PGA1_c03400at 327.179 kb on + strand, within PGA1_c03400at 327.268 kb on - strand, within PGA1_c03400

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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324,557 - PGA1_c03380 0.32 -0.4
324,557 - PGA1_c03380 0.32 -0.4
324,571 + PGA1_c03380 0.33 -0.7
324,573 + PGA1_c03380 0.34 -0.5
324,615 - PGA1_c03380 0.38 -0.0
324,618 - PGA1_c03380 0.39 -1.0
324,623 - PGA1_c03380 0.39 -1.6
324,680 + PGA1_c03380 0.46 -0.3
324,718 + PGA1_c03380 0.50 +0.1
324,726 - PGA1_c03380 0.51 -1.3
324,726 - PGA1_c03380 0.51 -0.7
324,726 - PGA1_c03380 0.51 +1.5
324,755 + PGA1_c03380 0.54 -0.5
324,763 - PGA1_c03380 0.55 -0.9
324,768 + PGA1_c03380 0.56 -0.9
324,815 - PGA1_c03380 0.61 -0.1
324,820 - PGA1_c03380 0.62 +0.1
324,820 - PGA1_c03380 0.62 +0.2
324,912 - PGA1_c03380 0.72 +0.4
324,951 + PGA1_c03380 0.77 +0.2
324,951 + PGA1_c03380 0.77 +0.8
324,959 - PGA1_c03380 0.77 -1.3
324,959 - PGA1_c03380 0.77 -1.0
324,959 - PGA1_c03380 0.77 -0.1
324,959 - PGA1_c03380 0.77 +0.9
324,959 - PGA1_c03380 0.77 -0.0
324,966 - PGA1_c03380 0.78 -1.8
324,966 - PGA1_c03380 0.78 +0.3
324,984 - PGA1_c03380 0.80 -1.4
325,045 - PGA1_c03380 0.87 -2.1
325,072 + -0.2
325,131 - -0.0
325,155 - -0.1
325,194 + +0.2
325,317 - -0.3
325,343 + -0.1
325,377 + +0.2
325,400 - +0.5
325,407 - +0.0
325,421 - +0.1
325,448 - +0.0
325,519 + -1.0
325,624 - -2.7
325,634 - PGA1_c03390 0.11 -3.5
325,634 - PGA1_c03390 0.11 -4.1
325,762 + PGA1_c03390 0.29 -3.5
325,770 - PGA1_c03390 0.30 -2.6
325,791 - PGA1_c03390 0.33 -3.9
325,807 + PGA1_c03390 0.35 -2.7
325,840 + PGA1_c03390 0.40 -3.2
325,843 - PGA1_c03390 0.40 -1.8
325,845 - PGA1_c03390 0.41 -2.9
325,922 - PGA1_c03390 0.51 -3.3
325,922 - PGA1_c03390 0.51 -1.8
325,937 + PGA1_c03390 0.53 -2.1
325,937 + PGA1_c03390 0.53 -3.1
325,945 - PGA1_c03390 0.54 -2.9
325,945 - PGA1_c03390 0.54 -4.3
325,945 - PGA1_c03390 0.54 -1.0
325,945 - PGA1_c03390 0.54 -4.3
325,947 - PGA1_c03390 0.55 -2.9
325,968 - PGA1_c03390 0.58 -0.7
325,988 + PGA1_c03390 0.60 -1.0
326,071 - PGA1_c03390 0.72 -2.6
326,087 + PGA1_c03390 0.74 -2.1
326,094 + PGA1_c03390 0.75 -3.0
326,094 + PGA1_c03390 0.75 -2.8
326,095 - PGA1_c03390 0.75 -3.0
326,191 + PGA1_c03390 0.88 -2.2
326,192 + PGA1_c03390 0.89 -3.8
326,192 + PGA1_c03390 0.89 -2.2
326,192 + PGA1_c03390 0.89 -1.4
326,199 - PGA1_c03390 0.89 -2.4
326,199 - PGA1_c03390 0.89 -1.4
326,200 - PGA1_c03390 0.90 -2.0
326,200 - PGA1_c03390 0.90 -3.3
326,238 + -1.8
326,366 + -0.9
326,374 - -1.7
326,450 - -1.9
326,461 - -0.9
326,478 + -0.7
326,496 - -2.2
326,530 + -3.1
326,540 + -1.5
326,611 - PGA1_c03400 0.11 -1.1
326,675 - PGA1_c03400 0.17 -2.0
326,685 + PGA1_c03400 0.17 +0.3
326,690 + PGA1_c03400 0.18 -2.7
326,690 + PGA1_c03400 0.18 -1.8
326,690 + PGA1_c03400 0.18 -3.5
326,690 + PGA1_c03400 0.18 -3.1
326,690 + PGA1_c03400 0.18 -2.4
326,690 + PGA1_c03400 0.18 -2.0
326,690 + PGA1_c03400 0.18 -2.9
326,690 + PGA1_c03400 0.18 -2.0
326,693 - PGA1_c03400 0.18 -2.4
326,693 - PGA1_c03400 0.18 -1.8
326,693 - PGA1_c03400 0.18 -2.7
326,698 - PGA1_c03400 0.19 -2.3
326,698 - PGA1_c03400 0.19 -2.2
326,698 - PGA1_c03400 0.19 -2.6
326,698 - PGA1_c03400 0.19 -2.5
326,698 - PGA1_c03400 0.19 -2.8
326,698 - PGA1_c03400 0.19 -4.1
326,698 - PGA1_c03400 0.19 -2.0
326,698 - PGA1_c03400 0.19 -3.7
326,698 - PGA1_c03400 0.19 -2.8
326,698 - PGA1_c03400 0.19 -2.2
326,698 - PGA1_c03400 0.19 -1.0
326,759 - PGA1_c03400 0.24 -1.4
326,763 + PGA1_c03400 0.24 -2.3
326,779 + PGA1_c03400 0.25 -4.1
326,788 - PGA1_c03400 0.26 -1.7
326,806 + PGA1_c03400 0.28 -2.7
326,843 - PGA1_c03400 0.31 -2.3
326,848 + PGA1_c03400 0.31 -2.7
326,856 - PGA1_c03400 0.32 -1.8
326,872 + PGA1_c03400 0.33 -2.1
326,882 + PGA1_c03400 0.34 -2.5
326,888 - PGA1_c03400 0.35 -0.8
326,898 - PGA1_c03400 0.36 -2.2
326,944 - PGA1_c03400 0.39 -3.4
327,026 + PGA1_c03400 0.46 -3.3
327,034 - PGA1_c03400 0.47 -2.0
327,058 - PGA1_c03400 0.49 -1.9
327,058 - PGA1_c03400 0.49 -2.9
327,102 + PGA1_c03400 0.53 -2.3
327,102 + PGA1_c03400 0.53 -2.9
327,147 - PGA1_c03400 0.57 -0.7
327,178 - PGA1_c03400 0.59 -4.5
327,179 + PGA1_c03400 0.59 -3.1
327,268 - PGA1_c03400 0.67 -1.5

Or see this region's nucleotide sequence