Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c32140

Experiment: L-Threonine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (C)
3,369,394	+		PGA1_c32130	0.31	+0.8
3,369,430	+		PGA1_c32130	0.34	+0.7
3,369,470	-		PGA1_c32130	0.37	+0.3
3,369,494	-		PGA1_c32130	0.39	-1.0
3,369,504	-		PGA1_c32130	0.40	-0.5
3,369,513	-		PGA1_c32130	0.41	+0.8
3,369,638	-		PGA1_c32130	0.50	+0.2
3,369,656	-		PGA1_c32130	0.52	-0.2
3,369,664	+		PGA1_c32130	0.52	-0.3
3,369,811	-		PGA1_c32130	0.64	-0.4
3,369,811	-		PGA1_c32130	0.64	+0.9
3,369,821	-		PGA1_c32130	0.65	+0.3
3,369,821	-		PGA1_c32130	0.65	-0.1
3,369,855	+		PGA1_c32130	0.67	+0.1
3,369,872	+		PGA1_c32130	0.69	+0.4
3,369,886	-		PGA1_c32130	0.70	+0.5
3,369,956	+		PGA1_c32130	0.75	-1.1
3,369,995	-		PGA1_c32130	0.78	-0.1
3,370,022	+		PGA1_c32130	0.80	+0.9
3,370,054	-		PGA1_c32130	0.83	+0.1
3,370,067	-		PGA1_c32130	0.84	-0.9
3,370,082	+		PGA1_c32130	0.85	-0.1
3,370,082	+		PGA1_c32130	0.85	+0.7
3,370,090	-		PGA1_c32130	0.85	+1.0
3,370,090	-		PGA1_c32130	0.85	-1.1
3,370,245	-				+1.1
3,370,270	-				+0.5
3,370,272	+				+1.2
3,370,272	+				-1.0
3,370,280	-				+0.6
3,370,280	-				-0.5
3,370,295	-				+0.7
3,370,325	+				+0.2
3,370,355	+				-0.2
3,370,365	+				+0.9
3,370,451	-				+0.2
3,370,461	-				+0.5
3,370,476	-				+0.5
3,370,484	-				+0.6
3,370,547	-				-0.1
3,370,653	-		PGA1_c32140	0.14	+0.3
3,370,731	-		PGA1_c32140	0.17	-1.9
3,370,733	-		PGA1_c32140	0.17	-0.6
3,370,764	-		PGA1_c32140	0.19	-0.6
3,370,833	+		PGA1_c32140	0.22	-0.1
3,370,833	+		PGA1_c32140	0.22	+0.1
3,370,841	-		PGA1_c32140	0.22	-1.1
3,370,841	-		PGA1_c32140	0.22	+0.2
3,370,841	-		PGA1_c32140	0.22	+1.2
3,370,894	+		PGA1_c32140	0.24	-0.2
3,370,894	+		PGA1_c32140	0.24	+0.1
3,370,894	+		PGA1_c32140	0.24	+0.5
3,370,894	+		PGA1_c32140	0.24	-0.3
3,370,894	+		PGA1_c32140	0.24	+0.2
3,370,896	-		PGA1_c32140	0.24	-0.6
3,370,902	-		PGA1_c32140	0.25	+0.1
3,370,902	-		PGA1_c32140	0.25	-0.7
3,370,935	-		PGA1_c32140	0.26	-0.1
3,370,940	+		PGA1_c32140	0.26	+0.4
3,370,965	-		PGA1_c32140	0.28	+0.1
3,370,965	-		PGA1_c32140	0.28	-0.8
3,371,039	-		PGA1_c32140	0.31	-0.1
3,371,049	-		PGA1_c32140	0.31	+0.7
3,371,055	+		PGA1_c32140	0.31	-0.4
3,371,063	+		PGA1_c32140	0.32	-0.4
3,371,063	-		PGA1_c32140	0.32	+0.3
3,371,110	+		PGA1_c32140	0.34	-0.4
3,371,112	+		PGA1_c32140	0.34	+0.9
3,371,119	-		PGA1_c32140	0.34	+0.5
3,371,154	+		PGA1_c32140	0.36	-1.0
3,371,172	+		PGA1_c32140	0.37	+0.4
3,371,172	+		PGA1_c32140	0.37	+0.1
3,371,172	+		PGA1_c32140	0.37	+0.0
3,371,175	-		PGA1_c32140	0.37	+0.7
3,371,180	-		PGA1_c32140	0.37	+0.3
3,371,222	-		PGA1_c32140	0.39	-0.7
3,371,269	+		PGA1_c32140	0.41	+0.1
3,371,295	+		PGA1_c32140	0.42	-0.7
3,371,306	+		PGA1_c32140	0.43	-0.8
3,371,306	+		PGA1_c32140	0.43	+0.0
3,371,327	-		PGA1_c32140	0.43	-0.4
3,371,400	+		PGA1_c32140	0.47	-0.7
3,371,405	+		PGA1_c32140	0.47	+1.1
3,371,504	+		PGA1_c32140	0.51	+1.1
3,371,537	+		PGA1_c32140	0.53	+0.4
3,371,633	-		PGA1_c32140	0.57	-0.7
3,371,714	+		PGA1_c32140	0.61	-0.6
3,371,731	-		PGA1_c32140	0.61	-0.9
3,371,796	+		PGA1_c32140	0.64	+0.2
3,371,842	+		PGA1_c32140	0.66	-0.1
3,371,906	+		PGA1_c32140	0.69	+0.7
3,371,919	-		PGA1_c32140	0.70	+0.9
3,372,006	-		PGA1_c32140	0.73	+0.8
3,372,010	+		PGA1_c32140	0.74	+0.7
3,372,018	-		PGA1_c32140	0.74	+0.3
3,372,021	+		PGA1_c32140	0.74	-0.4
3,372,022	+		PGA1_c32140	0.74	+1.4
3,372,029	-		PGA1_c32140	0.74	-0.1
3,372,030	-		PGA1_c32140	0.75	-0.7
3,372,030	-		PGA1_c32140	0.75	-0.0
3,372,035	+		PGA1_c32140	0.75	+0.4
3,372,037	+		PGA1_c32140	0.75	+0.8
3,372,045	+		PGA1_c32140	0.75	+0.3
3,372,053	-		PGA1_c32140	0.76	-0.3
3,372,053	-		PGA1_c32140	0.76	+0.7
3,372,116	-		PGA1_c32140	0.78	+0.2
3,372,116	-		PGA1_c32140	0.78	+1.0
3,372,140	-		PGA1_c32140	0.79	+0.8
3,372,170	-		PGA1_c32140	0.81	-0.4
3,372,214	-		PGA1_c32140	0.83	+0.4
3,372,214	-		PGA1_c32140	0.83	+1.0
3,372,220	-		PGA1_c32140	0.83	+0.2
3,372,221	+		PGA1_c32140	0.83	+0.7
3,372,226	+		PGA1_c32140	0.83	+0.0
3,372,240	+		PGA1_c32140	0.84	+0.8
3,372,253	+		PGA1_c32140	0.84	-0.5
3,372,261	-		PGA1_c32140	0.85	-1.1
3,372,264	+		PGA1_c32140	0.85	+0.7
3,372,272	-		PGA1_c32140	0.85	+0.0
3,372,282	-		PGA1_c32140	0.86	+0.2
3,372,303	-		PGA1_c32140	0.87	+1.1
3,372,303	-		PGA1_c32140	0.87	-0.9
3,372,368	+		PGA1_c32140	0.89	-0.1
3,372,368	+		PGA1_c32140	0.89	-0.3
3,372,370	-		PGA1_c32140	0.90	-0.9
3,372,377	+		PGA1_c32140	0.90	-0.7
3,372,487	-				-1.0
3,372,500	+				+0.6
3,372,676	-				-0.5
3,372,685	+				-1.2
3,372,693	+				+0.6
3,372,729	+		PGA1_c32150	0.11	+0.0
3,372,756	+		PGA1_c32150	0.15	-0.2
3,372,764	-		PGA1_c32150	0.16	-0.3
3,372,771	-		PGA1_c32150	0.17	-1.0
3,372,783	-		PGA1_c32150	0.19	+0.0
3,372,810	-		PGA1_c32150	0.24	-2.0
3,372,843	+		PGA1_c32150	0.29	-0.5
3,372,868	+		PGA1_c32150	0.33	+0.4
3,372,894	+		PGA1_c32150	0.38	-0.2
3,372,944	+		PGA1_c32150	0.46	-0.3
3,372,944	+		PGA1_c32150	0.46	-0.1
3,372,951	+		PGA1_c32150	0.47	-0.3
3,372,952	-		PGA1_c32150	0.47	+1.3
3,372,952	-		PGA1_c32150	0.47	+0.6
3,372,980	+		PGA1_c32150	0.52	-0.1
3,372,998	-		PGA1_c32150	0.55	-1.0
3,373,042	+		PGA1_c32150	0.62	+0.4
3,373,050	+		PGA1_c32150	0.64	+1.9
3,373,058	-		PGA1_c32150	0.65	+0.2
3,373,099	+		PGA1_c32150	0.72	-1.2
3,373,107	+		PGA1_c32150	0.73	-0.3
3,373,132	-		PGA1_c32150	0.77	+0.3
3,373,147	-		PGA1_c32150	0.80	-0.6
3,373,205	-		PGA1_c32150	0.89	+0.8
3,373,273	-				-0.4
3,373,304	-				-1.3
3,373,305	-				-0.7
3,373,385	-				-1.9
3,373,390	+				-0.6
3,373,467	-				-0.4
3,373,492	-		PGA1_c32160	0.11	-1.1
3,373,552	-		PGA1_c32160	0.17	+0.3
3,373,571	+		PGA1_c32160	0.20	+0.3
3,373,579	-		PGA1_c32160	0.20	+0.1
3,373,606	+		PGA1_c32160	0.23	-0.3