Experiment: m.b. Bacitracin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2380 and HP15_2381 are separated by 43 nucleotides HP15_2381 and HP15_2382 are separated by 73 nucleotides
HP15_2380: HP15_2380 - metallo-beta-lactamase family protein, at 2,508,515 to 2,509,906
_2380
HP15_2381: HP15_2381 - UDP-glucose 6-dehydrogenase, at 2,509,950 to 2,511,143
_2381
HP15_2382: HP15_2382 - UDP-N-acetylglucosamine 2-epimerase, at 2,511,217 to 2,512,350
_2382
Position (kb)
2509
2510
2511
2512 Strain fitness (log2 ratio)
-2
-1
0
1 at 2509.007 kb on - strand, within HP15_2380 at 2509.009 kb on + strand, within HP15_2380 at 2509.119 kb on - strand, within HP15_2380 at 2509.185 kb on + strand, within HP15_2380 at 2509.187 kb on + strand, within HP15_2380 at 2509.195 kb on - strand, within HP15_2380 at 2509.207 kb on + strand, within HP15_2380 at 2509.220 kb on + strand, within HP15_2380 at 2509.231 kb on + strand, within HP15_2380 at 2509.327 kb on - strand, within HP15_2380 at 2509.396 kb on - strand, within HP15_2380 at 2509.432 kb on + strand, within HP15_2380 at 2509.432 kb on + strand, within HP15_2380 at 2509.440 kb on - strand, within HP15_2380 at 2509.446 kb on + strand, within HP15_2380 at 2509.454 kb on - strand, within HP15_2380 at 2509.470 kb on + strand, within HP15_2380 at 2509.504 kb on - strand, within HP15_2380 at 2509.591 kb on - strand, within HP15_2380 at 2509.596 kb on + strand, within HP15_2380 at 2509.649 kb on + strand, within HP15_2380 at 2509.657 kb on - strand, within HP15_2380 at 2509.788 kb on + strand at 2509.878 kb on - strand at 2509.975 kb on + strand at 2509.975 kb on + strand at 2509.985 kb on + strand at 2509.985 kb on + strand at 2510.007 kb on - strand at 2510.070 kb on - strand, within HP15_2381 at 2510.166 kb on + strand, within HP15_2381 at 2510.174 kb on - strand, within HP15_2381 at 2510.174 kb on - strand, within HP15_2381 at 2510.287 kb on + strand, within HP15_2381 at 2510.287 kb on + strand, within HP15_2381 at 2510.287 kb on + strand, within HP15_2381 at 2510.295 kb on - strand, within HP15_2381 at 2510.295 kb on - strand, within HP15_2381 at 2510.295 kb on - strand, within HP15_2381 at 2510.295 kb on - strand, within HP15_2381 at 2510.300 kb on + strand, within HP15_2381 at 2510.307 kb on - strand, within HP15_2381 at 2510.366 kb on - strand, within HP15_2381 at 2510.378 kb on + strand, within HP15_2381 at 2510.378 kb on + strand, within HP15_2381 at 2510.445 kb on - strand, within HP15_2381 at 2510.573 kb on + strand, within HP15_2381 at 2510.573 kb on + strand, within HP15_2381 at 2510.581 kb on - strand, within HP15_2381 at 2510.590 kb on + strand, within HP15_2381 at 2510.600 kb on - strand, within HP15_2381 at 2510.665 kb on + strand, within HP15_2381 at 2510.721 kb on - strand, within HP15_2381 at 2510.783 kb on + strand, within HP15_2381 at 2510.826 kb on + strand, within HP15_2381 at 2510.827 kb on - strand, within HP15_2381 at 2510.921 kb on - strand, within HP15_2381 at 2510.976 kb on + strand, within HP15_2381 at 2511.086 kb on - strand at 2511.205 kb on + strand at 2511.213 kb on - strand at 2511.213 kb on - strand at 2511.568 kb on - strand, within HP15_2382 at 2511.583 kb on + strand, within HP15_2382 at 2511.626 kb on - strand, within HP15_2382 at 2511.626 kb on - strand, within HP15_2382 at 2511.629 kb on + strand, within HP15_2382 at 2511.848 kb on - strand, within HP15_2382
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.5 mg/ml remove 2,509,007 - HP15_2380 0.35 -0.7 2,509,009 + HP15_2380 0.35 +0.1 2,509,119 - HP15_2380 0.43 -0.2 2,509,185 + HP15_2380 0.48 +0.5 2,509,187 + HP15_2380 0.48 -0.1 2,509,195 - HP15_2380 0.49 -0.2 2,509,207 + HP15_2380 0.50 +0.4 2,509,220 + HP15_2380 0.51 +0.1 2,509,231 + HP15_2380 0.51 -0.9 2,509,327 - HP15_2380 0.58 -0.0 2,509,396 - HP15_2380 0.63 +0.5 2,509,432 + HP15_2380 0.66 -1.9 2,509,432 + HP15_2380 0.66 -0.1 2,509,440 - HP15_2380 0.66 +0.1 2,509,446 + HP15_2380 0.67 +0.6 2,509,454 - HP15_2380 0.67 -0.2 2,509,470 + HP15_2380 0.69 +0.5 2,509,504 - HP15_2380 0.71 -0.6 2,509,591 - HP15_2380 0.77 -0.3 2,509,596 + HP15_2380 0.78 +0.4 2,509,649 + HP15_2380 0.81 -0.4 2,509,657 - HP15_2380 0.82 +0.0 2,509,788 + -0.3 2,509,878 - -0.1 2,509,975 + +0.0 2,509,975 + +0.3 2,509,985 + -0.4 2,509,985 + -0.1 2,510,007 - +1.1 2,510,070 - HP15_2381 0.10 -0.1 2,510,166 + HP15_2381 0.18 -0.3 2,510,174 - HP15_2381 0.19 -0.1 2,510,174 - HP15_2381 0.19 +0.1 2,510,287 + HP15_2381 0.28 +0.4 2,510,287 + HP15_2381 0.28 +0.1 2,510,287 + HP15_2381 0.28 -0.9 2,510,295 - HP15_2381 0.29 -0.0 2,510,295 - HP15_2381 0.29 -0.1 2,510,295 - HP15_2381 0.29 -0.3 2,510,295 - HP15_2381 0.29 -0.1 2,510,300 + HP15_2381 0.29 -0.1 2,510,307 - HP15_2381 0.30 -0.8 2,510,366 - HP15_2381 0.35 +1.4 2,510,378 + HP15_2381 0.36 +0.0 2,510,378 + HP15_2381 0.36 +1.6 2,510,445 - HP15_2381 0.41 +0.2 2,510,573 + HP15_2381 0.52 +0.9 2,510,573 + HP15_2381 0.52 +1.3 2,510,581 - HP15_2381 0.53 +0.1 2,510,590 + HP15_2381 0.54 -0.2 2,510,600 - HP15_2381 0.54 -0.4 2,510,665 + HP15_2381 0.60 -0.8 2,510,721 - HP15_2381 0.65 -0.3 2,510,783 + HP15_2381 0.70 -0.1 2,510,826 + HP15_2381 0.73 -0.0 2,510,827 - HP15_2381 0.73 +0.5 2,510,921 - HP15_2381 0.81 +1.0 2,510,976 + HP15_2381 0.86 -0.0 2,511,086 - -0.6 2,511,205 + +0.1 2,511,213 - -0.3 2,511,213 - -0.2 2,511,568 - HP15_2382 0.31 +0.3 2,511,583 + HP15_2382 0.32 -0.0 2,511,626 - HP15_2382 0.36 +0.5 2,511,626 - HP15_2382 0.36 -0.1 2,511,629 + HP15_2382 0.36 +0.6 2,511,848 - HP15_2382 0.56 -0.5
Or see this region's nucleotide sequence