Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02140

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02120 and PGA1_c02130 are separated by 5 nucleotidesPGA1_c02130 and PGA1_c02140 are separated by 99 nucleotidesPGA1_c02140 and PGA1_c02150 are separated by 26 nucleotidesPGA1_c02150 and PGA1_c02170 are separated by 398 nucleotides PGA1_c02120: PGA1_c02120 - hypothetical protein, at 195,571 to 196,143 _c02120 PGA1_c02130: PGA1_c02130 - conserved hypothetical protein YidD, at 196,149 to 196,421 _c02130 PGA1_c02140: PGA1_c02140 - putative ribonuclease P component, at 196,521 to 196,973 _c02140 PGA1_c02150: PGA1_c02150 - 50S ribosomal protein L34, at 197,000 to 197,134 _c02150 PGA1_c02170: PGA1_c02170 - Uncharacterized conserved protein, at 197,533 to 198,336 _c02170 Position (kb) 196 197Strain fitness (log2 ratio) -2 -1 0 1 2at 195.530 kb on + strandat 195.556 kb on + strandat 195.556 kb on + strandat 195.562 kb on + strandat 195.562 kb on + strandat 195.564 kb on - strandat 195.570 kb on - strandat 195.617 kb on + strandat 195.672 kb on + strand, within PGA1_c02120at 195.768 kb on + strand, within PGA1_c02120at 195.768 kb on + strand, within PGA1_c02120at 195.776 kb on - strand, within PGA1_c02120at 195.776 kb on - strand, within PGA1_c02120at 195.776 kb on - strand, within PGA1_c02120at 195.778 kb on + strand, within PGA1_c02120at 195.778 kb on + strand, within PGA1_c02120at 195.786 kb on - strand, within PGA1_c02120at 195.786 kb on - strand, within PGA1_c02120at 195.788 kb on + strand, within PGA1_c02120at 195.796 kb on - strand, within PGA1_c02120at 195.821 kb on + strand, within PGA1_c02120at 195.821 kb on + strand, within PGA1_c02120at 195.821 kb on + strand, within PGA1_c02120at 195.829 kb on - strand, within PGA1_c02120at 195.829 kb on - strand, within PGA1_c02120at 195.829 kb on - strand, within PGA1_c02120at 195.857 kb on - strand, within PGA1_c02120at 195.866 kb on + strand, within PGA1_c02120at 195.891 kb on + strand, within PGA1_c02120at 195.942 kb on - strand, within PGA1_c02120at 195.971 kb on - strand, within PGA1_c02120at 195.979 kb on - strand, within PGA1_c02120at 196.060 kb on + strand, within PGA1_c02120at 196.084 kb on + strand, within PGA1_c02120at 196.100 kb on + strandat 196.108 kb on - strandat 196.118 kb on - strandat 196.127 kb on + strandat 196.147 kb on + strandat 196.198 kb on - strand, within PGA1_c02130at 196.211 kb on - strand, within PGA1_c02130at 196.360 kb on + strand, within PGA1_c02130at 196.373 kb on + strand, within PGA1_c02130at 196.417 kb on + strandat 196.423 kb on - strandat 196.448 kb on + strandat 196.466 kb on - strandat 196.495 kb on - strandat 196.504 kb on + strandat 196.504 kb on + strandat 196.504 kb on + strandat 196.512 kb on - strandat 196.977 kb on + strandat 197.335 kb on + strandat 197.368 kb on + strandat 197.370 kb on - strandat 197.376 kb on - strandat 197.412 kb on - strandat 197.470 kb on - strandat 197.486 kb on + strandat 197.486 kb on + strandat 197.486 kb on + strandat 197.501 kb on + strandat 197.507 kb on + strandat 197.509 kb on - strandat 197.515 kb on - strandat 197.621 kb on + strand, within PGA1_c02170at 197.621 kb on + strand, within PGA1_c02170at 197.629 kb on - strand, within PGA1_c02170at 197.629 kb on - strand, within PGA1_c02170at 197.629 kb on - strand, within PGA1_c02170at 197.681 kb on + strand, within PGA1_c02170at 197.687 kb on + strand, within PGA1_c02170at 197.771 kb on + strand, within PGA1_c02170at 197.785 kb on + strand, within PGA1_c02170at 197.785 kb on + strand, within PGA1_c02170at 197.790 kb on + strand, within PGA1_c02170at 197.790 kb on + strand, within PGA1_c02170at 197.790 kb on + strand, within PGA1_c02170at 197.790 kb on + strand, within PGA1_c02170at 197.790 kb on + strand, within PGA1_c02170at 197.792 kb on + strand, within PGA1_c02170at 197.793 kb on - strand, within PGA1_c02170at 197.867 kb on - strand, within PGA1_c02170at 197.867 kb on - strand, within PGA1_c02170at 197.942 kb on + strand, within PGA1_c02170

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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195,530 + +0.2
195,556 + -1.9
195,556 + -0.2
195,562 + +0.2
195,562 + +1.1
195,564 - -0.0
195,570 - +0.0
195,617 + -0.5
195,672 + PGA1_c02120 0.18 +0.1
195,768 + PGA1_c02120 0.34 +0.4
195,768 + PGA1_c02120 0.34 +0.7
195,776 - PGA1_c02120 0.36 +0.1
195,776 - PGA1_c02120 0.36 +0.7
195,776 - PGA1_c02120 0.36 +1.0
195,778 + PGA1_c02120 0.36 -1.0
195,778 + PGA1_c02120 0.36 -0.1
195,786 - PGA1_c02120 0.38 -0.5
195,786 - PGA1_c02120 0.38 +0.9
195,788 + PGA1_c02120 0.38 +0.4
195,796 - PGA1_c02120 0.39 +0.8
195,821 + PGA1_c02120 0.44 +0.3
195,821 + PGA1_c02120 0.44 +0.9
195,821 + PGA1_c02120 0.44 +1.1
195,829 - PGA1_c02120 0.45 +0.4
195,829 - PGA1_c02120 0.45 -0.2
195,829 - PGA1_c02120 0.45 -0.1
195,857 - PGA1_c02120 0.50 +1.1
195,866 + PGA1_c02120 0.51 +0.8
195,891 + PGA1_c02120 0.56 -0.3
195,942 - PGA1_c02120 0.65 -0.3
195,971 - PGA1_c02120 0.70 +0.9
195,979 - PGA1_c02120 0.71 +0.3
196,060 + PGA1_c02120 0.85 +0.8
196,084 + PGA1_c02120 0.90 -0.1
196,100 + +1.3
196,108 - +0.2
196,118 - +1.0
196,127 + +0.4
196,147 + +0.1
196,198 - PGA1_c02130 0.18 -0.3
196,211 - PGA1_c02130 0.23 +0.1
196,360 + PGA1_c02130 0.77 +0.2
196,373 + PGA1_c02130 0.82 +0.3
196,417 + -0.8
196,423 - -0.6
196,448 + -0.0
196,466 - +0.6
196,495 - -0.2
196,504 + +1.4
196,504 + -0.3
196,504 + +0.1
196,512 - +0.2
196,977 + +1.8
197,335 + +0.1
197,368 + +0.6
197,370 - +0.2
197,376 - -0.1
197,412 - -0.2
197,470 - +0.5
197,486 + +0.7
197,486 + +0.2
197,486 + +0.0
197,501 + +0.5
197,507 + -0.0
197,509 - +0.8
197,515 - +0.3
197,621 + PGA1_c02170 0.11 -0.2
197,621 + PGA1_c02170 0.11 -0.5
197,629 - PGA1_c02170 0.12 +0.7
197,629 - PGA1_c02170 0.12 +0.6
197,629 - PGA1_c02170 0.12 +0.3
197,681 + PGA1_c02170 0.18 -0.2
197,687 + PGA1_c02170 0.19 -0.4
197,771 + PGA1_c02170 0.30 -0.2
197,785 + PGA1_c02170 0.31 -0.2
197,785 + PGA1_c02170 0.31 -0.3
197,790 + PGA1_c02170 0.32 -0.8
197,790 + PGA1_c02170 0.32 +0.0
197,790 + PGA1_c02170 0.32 +0.3
197,790 + PGA1_c02170 0.32 +0.0
197,790 + PGA1_c02170 0.32 -0.1
197,792 + PGA1_c02170 0.32 +0.1
197,793 - PGA1_c02170 0.32 -0.2
197,867 - PGA1_c02170 0.42 +0.2
197,867 - PGA1_c02170 0.42 -1.0
197,942 + PGA1_c02170 0.51 +0.2

Or see this region's nucleotide sequence