Experiment: Succinate (C)_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3431 and Rru_A3432 are separated by 4 nucleotides Rru_A3432 and Rru_A3433 are separated by 171 nucleotides Rru_A3433 and Rru_A3434 are separated by 169 nucleotides
Rru_A3431: Rru_A3431 - Folylpolyglutamate synthetase (NCBI), at 3,948,781 to 3,950,088
_A3431
Rru_A3432: Rru_A3432 - hypothetical protein (NCBI), at 3,950,093 to 3,951,616
_A3432
Rru_A3433: Rru_A3433 - Thioredoxin (NCBI), at 3,951,788 to 3,952,102
_A3433
Rru_A3434: Rru_A3434 - UvrD/REP helicase (NCBI), at 3,952,272 to 3,955,835
_A3434
Position (kb)
3950
3951
3952 Strain fitness (log2 ratio)
-1
0
1 at 3950.345 kb on + strand, within Rru_A3432 at 3950.345 kb on + strand, within Rru_A3432 at 3950.635 kb on + strand, within Rru_A3432 at 3950.635 kb on + strand, within Rru_A3432 at 3950.635 kb on + strand, within Rru_A3432 at 3950.727 kb on + strand, within Rru_A3432 at 3950.727 kb on + strand, within Rru_A3432 at 3950.727 kb on + strand, within Rru_A3432 at 3950.727 kb on + strand, within Rru_A3432 at 3950.727 kb on + strand, within Rru_A3432 at 3950.727 kb on + strand, within Rru_A3432 at 3950.728 kb on - strand, within Rru_A3432 at 3951.168 kb on + strand, within Rru_A3432 at 3951.168 kb on + strand, within Rru_A3432 at 3951.168 kb on + strand, within Rru_A3432 at 3951.168 kb on + strand, within Rru_A3432 at 3951.168 kb on + strand, within Rru_A3432 at 3951.168 kb on + strand, within Rru_A3432 at 3951.168 kb on + strand, within Rru_A3432 at 3951.169 kb on - strand, within Rru_A3432 at 3951.169 kb on - strand, within Rru_A3432 at 3951.169 kb on - strand, within Rru_A3432 at 3951.169 kb on - strand, within Rru_A3432 at 3951.315 kb on + strand, within Rru_A3432 at 3951.340 kb on + strand, within Rru_A3432 at 3952.120 kb on - strand at 3952.273 kb on + strand at 3952.273 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinate (C)_noKan remove 3,950,345 + Rru_A3432 0.17 -0.0 3,950,345 + Rru_A3432 0.17 +0.0 3,950,635 + Rru_A3432 0.36 +1.3 3,950,635 + Rru_A3432 0.36 -0.0 3,950,635 + Rru_A3432 0.36 -0.3 3,950,727 + Rru_A3432 0.42 +1.0 3,950,727 + Rru_A3432 0.42 +0.3 3,950,727 + Rru_A3432 0.42 +0.0 3,950,727 + Rru_A3432 0.42 -0.2 3,950,727 + Rru_A3432 0.42 -0.1 3,950,727 + Rru_A3432 0.42 -0.2 3,950,728 - Rru_A3432 0.42 +1.1 3,951,168 + Rru_A3432 0.71 +0.4 3,951,168 + Rru_A3432 0.71 +0.0 3,951,168 + Rru_A3432 0.71 +0.1 3,951,168 + Rru_A3432 0.71 -0.1 3,951,168 + Rru_A3432 0.71 -0.2 3,951,168 + Rru_A3432 0.71 -0.9 3,951,168 + Rru_A3432 0.71 -1.6 3,951,169 - Rru_A3432 0.71 -0.1 3,951,169 - Rru_A3432 0.71 +0.4 3,951,169 - Rru_A3432 0.71 +0.1 3,951,169 - Rru_A3432 0.71 +0.8 3,951,315 + Rru_A3432 0.80 -0.0 3,951,340 + Rru_A3432 0.82 +1.0 3,952,120 - +0.5 3,952,273 + -0.0 3,952,273 + +1.3
Or see this region's nucleotide sequence