Experiment: Succinate (C)_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2249 and Rru_A2250 are separated by 246 nucleotides Rru_A2250 and Rru_A2251 are separated by 99 nucleotides
Rru_A2249: Rru_A2249 - Threonine aldolase (NCBI), at 2,611,407 to 2,612,456
_A2249
Rru_A2250: Rru_A2250 - ABC transporter component (NCBI), at 2,612,703 to 2,613,479
_A2250
Rru_A2251: Rru_A2251 - extracellular solute-binding protein, family 3 (NCBI), at 2,613,579 to 2,614,370
_A2251
Position (kb)
2612
2613
2614 Strain fitness (log2 ratio)
-1
0
1 at 2611.940 kb on + strand, within Rru_A2249 at 2611.940 kb on + strand, within Rru_A2249 at 2611.941 kb on - strand, within Rru_A2249 at 2611.941 kb on - strand, within Rru_A2249 at 2612.002 kb on + strand, within Rru_A2249 at 2612.002 kb on + strand, within Rru_A2249 at 2612.221 kb on + strand, within Rru_A2249 at 2612.222 kb on - strand, within Rru_A2249 at 2612.222 kb on - strand, within Rru_A2249 at 2612.222 kb on - strand, within Rru_A2249 at 2612.222 kb on - strand, within Rru_A2249 at 2612.366 kb on - strand at 2612.366 kb on - strand at 2612.558 kb on - strand at 2612.601 kb on + strand at 2612.602 kb on - strand at 2612.602 kb on - strand at 2612.679 kb on + strand at 2612.679 kb on + strand at 2612.680 kb on - strand at 2612.680 kb on - strand at 2612.680 kb on - strand at 2612.680 kb on - strand at 2612.680 kb on - strand at 2612.680 kb on - strand at 2612.680 kb on - strand at 2612.680 kb on - strand at 2612.680 kb on - strand at 2612.680 kb on - strand at 2612.680 kb on - strand at 2612.680 kb on - strand at 2612.681 kb on + strand at 2612.681 kb on + strand at 2612.682 kb on - strand at 2612.682 kb on - strand at 2612.738 kb on + strand at 2612.739 kb on - strand at 2612.739 kb on - strand at 2612.777 kb on + strand at 2612.777 kb on + strand at 2612.778 kb on - strand at 2612.778 kb on - strand at 2612.778 kb on - strand at 2612.778 kb on - strand at 2613.358 kb on + strand, within Rru_A2250 at 2613.358 kb on + strand, within Rru_A2250 at 2613.358 kb on + strand, within Rru_A2250 at 2613.358 kb on + strand, within Rru_A2250 at 2613.359 kb on - strand, within Rru_A2250 at 2613.477 kb on + strand at 2613.478 kb on - strand at 2613.864 kb on + strand, within Rru_A2251 at 2613.865 kb on - strand, within Rru_A2251 at 2613.865 kb on - strand, within Rru_A2251 at 2613.933 kb on + strand, within Rru_A2251 at 2613.934 kb on - strand, within Rru_A2251 at 2613.934 kb on - strand, within Rru_A2251 at 2613.936 kb on + strand, within Rru_A2251 at 2613.936 kb on + strand, within Rru_A2251 at 2613.936 kb on + strand, within Rru_A2251 at 2613.937 kb on - strand, within Rru_A2251 at 2613.937 kb on - strand, within Rru_A2251 at 2613.937 kb on - strand, within Rru_A2251 at 2613.937 kb on - strand, within Rru_A2251 at 2613.937 kb on - strand, within Rru_A2251 at 2613.937 kb on - strand, within Rru_A2251 at 2613.938 kb on + strand, within Rru_A2251 at 2613.938 kb on + strand, within Rru_A2251 at 2613.938 kb on + strand, within Rru_A2251 at 2613.938 kb on + strand, within Rru_A2251 at 2613.939 kb on - strand, within Rru_A2251 at 2613.939 kb on - strand, within Rru_A2251 at 2613.939 kb on - strand, within Rru_A2251 at 2613.939 kb on - strand, within Rru_A2251 at 2613.939 kb on - strand, within Rru_A2251 at 2613.939 kb on - strand, within Rru_A2251 at 2614.089 kb on + strand, within Rru_A2251 at 2614.089 kb on + strand, within Rru_A2251 at 2614.090 kb on - strand, within Rru_A2251 at 2614.110 kb on + strand, within Rru_A2251 at 2614.110 kb on + strand, within Rru_A2251 at 2614.111 kb on - strand, within Rru_A2251 at 2614.158 kb on + strand, within Rru_A2251 at 2614.158 kb on + strand, within Rru_A2251 at 2614.158 kb on + strand, within Rru_A2251 at 2614.158 kb on + strand, within Rru_A2251 at 2614.158 kb on + strand, within Rru_A2251 at 2614.158 kb on + strand, within Rru_A2251 at 2614.158 kb on + strand, within Rru_A2251 at 2614.158 kb on + strand, within Rru_A2251 at 2614.159 kb on - strand, within Rru_A2251 at 2614.159 kb on - strand, within Rru_A2251 at 2614.159 kb on - strand, within Rru_A2251 at 2614.159 kb on - strand, within Rru_A2251 at 2614.167 kb on + strand, within Rru_A2251 at 2614.167 kb on + strand, within Rru_A2251 at 2614.167 kb on + strand, within Rru_A2251 at 2614.168 kb on - strand, within Rru_A2251 at 2614.168 kb on - strand, within Rru_A2251 at 2614.200 kb on + strand, within Rru_A2251 at 2614.201 kb on - strand, within Rru_A2251 at 2614.201 kb on - strand, within Rru_A2251 at 2614.201 kb on - strand, within Rru_A2251 at 2614.323 kb on + strand at 2614.323 kb on + strand at 2614.323 kb on + strand at 2614.324 kb on - strand at 2614.324 kb on - strand at 2614.324 kb on - strand at 2614.324 kb on - strand at 2614.324 kb on - strand at 2614.344 kb on + strand at 2614.344 kb on + strand at 2614.344 kb on + strand at 2614.345 kb on - strand at 2614.345 kb on - strand at 2614.368 kb on + strand at 2614.368 kb on + strand at 2614.369 kb on - strand at 2614.380 kb on + strand at 2614.380 kb on + strand at 2614.434 kb on + strand at 2614.435 kb on - strand at 2614.435 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinate (C)_noKan remove 2,611,940 + Rru_A2249 0.51 +0.2 2,611,940 + Rru_A2249 0.51 +0.1 2,611,941 - Rru_A2249 0.51 -0.1 2,611,941 - Rru_A2249 0.51 +0.2 2,612,002 + Rru_A2249 0.57 -0.7 2,612,002 + Rru_A2249 0.57 -0.2 2,612,221 + Rru_A2249 0.78 -0.6 2,612,222 - Rru_A2249 0.78 +0.8 2,612,222 - Rru_A2249 0.78 +0.1 2,612,222 - Rru_A2249 0.78 +0.0 2,612,222 - Rru_A2249 0.78 +1.2 2,612,366 - +1.6 2,612,366 - +0.6 2,612,558 - +0.0 2,612,601 + -0.2 2,612,602 - +0.1 2,612,602 - -0.0 2,612,679 + -0.8 2,612,679 + -0.0 2,612,680 - +0.3 2,612,680 - -0.0 2,612,680 - +0.2 2,612,680 - -0.9 2,612,680 - -0.2 2,612,680 - -0.3 2,612,680 - +0.0 2,612,680 - -0.1 2,612,680 - -0.2 2,612,680 - +0.1 2,612,680 - -0.3 2,612,680 - -0.2 2,612,681 + -1.2 2,612,681 + +0.4 2,612,682 - +0.2 2,612,682 - +0.0 2,612,738 + +0.0 2,612,739 - -0.3 2,612,739 - -0.2 2,612,777 + +0.5 2,612,777 + +0.1 2,612,778 - -0.4 2,612,778 - +0.4 2,612,778 - +0.1 2,612,778 - +0.2 2,613,358 + Rru_A2250 0.84 -0.1 2,613,358 + Rru_A2250 0.84 -0.1 2,613,358 + Rru_A2250 0.84 +0.5 2,613,358 + Rru_A2250 0.84 +0.1 2,613,359 - Rru_A2250 0.84 +0.7 2,613,477 + -0.2 2,613,478 - +1.4 2,613,864 + Rru_A2251 0.36 -0.2 2,613,865 - Rru_A2251 0.36 +0.1 2,613,865 - Rru_A2251 0.36 -0.2 2,613,933 + Rru_A2251 0.45 -0.2 2,613,934 - Rru_A2251 0.45 +0.2 2,613,934 - Rru_A2251 0.45 +0.3 2,613,936 + Rru_A2251 0.45 +0.4 2,613,936 + Rru_A2251 0.45 +0.2 2,613,936 + Rru_A2251 0.45 -0.0 2,613,937 - Rru_A2251 0.45 +0.1 2,613,937 - Rru_A2251 0.45 -0.1 2,613,937 - Rru_A2251 0.45 +0.6 2,613,937 - Rru_A2251 0.45 -0.0 2,613,937 - Rru_A2251 0.45 -0.3 2,613,937 - Rru_A2251 0.45 -0.4 2,613,938 + Rru_A2251 0.45 -0.2 2,613,938 + Rru_A2251 0.45 +0.8 2,613,938 + Rru_A2251 0.45 -1.0 2,613,938 + Rru_A2251 0.45 -0.0 2,613,939 - Rru_A2251 0.45 +0.4 2,613,939 - Rru_A2251 0.45 -0.4 2,613,939 - Rru_A2251 0.45 +0.0 2,613,939 - Rru_A2251 0.45 -0.8 2,613,939 - Rru_A2251 0.45 -0.0 2,613,939 - Rru_A2251 0.45 +0.1 2,614,089 + Rru_A2251 0.64 -0.5 2,614,089 + Rru_A2251 0.64 -0.1 2,614,090 - Rru_A2251 0.65 -0.7 2,614,110 + Rru_A2251 0.67 -0.1 2,614,110 + Rru_A2251 0.67 -0.1 2,614,111 - Rru_A2251 0.67 -0.4 2,614,158 + Rru_A2251 0.73 -0.6 2,614,158 + Rru_A2251 0.73 -0.4 2,614,158 + Rru_A2251 0.73 +0.0 2,614,158 + Rru_A2251 0.73 -0.3 2,614,158 + Rru_A2251 0.73 -0.0 2,614,158 + Rru_A2251 0.73 -0.4 2,614,158 + Rru_A2251 0.73 -0.3 2,614,158 + Rru_A2251 0.73 -0.4 2,614,159 - Rru_A2251 0.73 -0.7 2,614,159 - Rru_A2251 0.73 +0.1 2,614,159 - Rru_A2251 0.73 -0.5 2,614,159 - Rru_A2251 0.73 -0.4 2,614,167 + Rru_A2251 0.74 +0.3 2,614,167 + Rru_A2251 0.74 -0.0 2,614,167 + Rru_A2251 0.74 +0.3 2,614,168 - Rru_A2251 0.74 +0.4 2,614,168 - Rru_A2251 0.74 +0.6 2,614,200 + Rru_A2251 0.78 -0.1 2,614,201 - Rru_A2251 0.79 -0.4 2,614,201 - Rru_A2251 0.79 +0.1 2,614,201 - Rru_A2251 0.79 -0.6 2,614,323 + +0.0 2,614,323 + -0.3 2,614,323 + -0.1 2,614,324 - -0.2 2,614,324 - +0.6 2,614,324 - -0.2 2,614,324 - -0.2 2,614,324 - +0.3 2,614,344 + -0.7 2,614,344 + +0.8 2,614,344 + +0.9 2,614,345 - +0.2 2,614,345 - -0.4 2,614,368 + -0.5 2,614,368 + +0.0 2,614,369 - -0.6 2,614,380 + +0.6 2,614,380 + +0.0 2,614,434 + -0.3 2,614,435 - -0.3 2,614,435 - -0.6
Or see this region's nucleotide sequence