Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1297

Experiment: Succinate (C)_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1295 and Rru_A1296 are separated by 71 nucleotidesRru_A1296 and Rru_A1297 overlap by 4 nucleotidesRru_A1297 and Rru_A1298 overlap by 1 nucleotidesRru_A1298 and Rru_A1299 are separated by 20 nucleotides Rru_A1295: Rru_A1295 - extracellular solute-binding protein, family 3 (NCBI), at 1,529,210 to 1,530,088 _A1295 Rru_A1296: Rru_A1296 - Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI), at 1,530,160 to 1,530,816 _A1296 Rru_A1297: Rru_A1297 - Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI), at 1,530,813 to 1,531,496 _A1297 Rru_A1298: Rru_A1298 - ABC transporter component (NCBI), at 1,531,496 to 1,532,287 _A1298 Rru_A1299: Rru_A1299 - FAD linked oxidase-like (NCBI), at 1,532,308 to 1,533,678 _A1299 Position (kb) 1530 1531 1532Strain fitness (log2 ratio) -1 0 1at 1529.844 kb on - strand, within Rru_A1295at 1529.858 kb on + strand, within Rru_A1295at 1529.858 kb on + strand, within Rru_A1295at 1529.859 kb on - strand, within Rru_A1295at 1529.859 kb on - strand, within Rru_A1295at 1529.921 kb on + strand, within Rru_A1295at 1529.921 kb on + strand, within Rru_A1295at 1529.922 kb on - strand, within Rru_A1295at 1529.922 kb on - strand, within Rru_A1295at 1530.086 kb on + strandat 1530.086 kb on + strandat 1530.087 kb on - strandat 1530.376 kb on + strand, within Rru_A1296at 1530.377 kb on - strand, within Rru_A1296at 1530.377 kb on - strand, within Rru_A1296at 1530.377 kb on - strand, within Rru_A1296at 1530.379 kb on + strand, within Rru_A1296at 1530.379 kb on + strand, within Rru_A1296at 1530.379 kb on + strand, within Rru_A1296at 1530.380 kb on - strand, within Rru_A1296at 1530.380 kb on - strand, within Rru_A1296at 1530.380 kb on - strand, within Rru_A1296at 1530.380 kb on - strand, within Rru_A1296at 1530.457 kb on + strand, within Rru_A1296at 1530.457 kb on + strand, within Rru_A1296at 1530.457 kb on + strand, within Rru_A1296at 1530.457 kb on + strand, within Rru_A1296at 1530.457 kb on + strand, within Rru_A1296at 1530.457 kb on + strand, within Rru_A1296at 1530.457 kb on + strand, within Rru_A1296at 1530.458 kb on - strand, within Rru_A1296at 1530.458 kb on - strand, within Rru_A1296at 1530.458 kb on - strand, within Rru_A1296at 1530.458 kb on - strand, within Rru_A1296at 1530.718 kb on + strand, within Rru_A1296at 1530.718 kb on + strand, within Rru_A1296at 1530.718 kb on + strand, within Rru_A1296at 1530.718 kb on + strand, within Rru_A1296at 1530.719 kb on - strand, within Rru_A1296at 1530.719 kb on - strand, within Rru_A1296at 1530.719 kb on - strand, within Rru_A1296at 1530.719 kb on - strand, within Rru_A1296at 1530.719 kb on - strand, within Rru_A1296at 1530.719 kb on - strand, within Rru_A1296at 1530.719 kb on - strand, within Rru_A1296at 1530.721 kb on - strand, within Rru_A1296at 1530.721 kb on - strand, within Rru_A1296at 1530.740 kb on - strand, within Rru_A1296at 1530.740 kb on - strand, within Rru_A1296at 1530.747 kb on + strand, within Rru_A1296at 1530.748 kb on - strand, within Rru_A1296at 1530.984 kb on + strand, within Rru_A1297at 1530.985 kb on - strand, within Rru_A1297at 1530.985 kb on - strand, within Rru_A1297at 1530.985 kb on - strand, within Rru_A1297at 1530.986 kb on + strand, within Rru_A1297at 1530.987 kb on - strand, within Rru_A1297at 1531.035 kb on + strand, within Rru_A1297at 1531.035 kb on + strand, within Rru_A1297at 1531.036 kb on - strand, within Rru_A1297at 1531.036 kb on - strand, within Rru_A1297at 1531.104 kb on + strand, within Rru_A1297at 1531.104 kb on + strand, within Rru_A1297at 1531.116 kb on + strand, within Rru_A1297at 1531.164 kb on + strand, within Rru_A1297at 1531.164 kb on + strand, within Rru_A1297at 1531.165 kb on - strand, within Rru_A1297at 1531.165 kb on - strand, within Rru_A1297at 1531.165 kb on - strand, within Rru_A1297at 1531.266 kb on - strand, within Rru_A1297at 1531.266 kb on - strand, within Rru_A1297at 1531.266 kb on - strand, within Rru_A1297at 1531.329 kb on + strand, within Rru_A1297at 1531.329 kb on + strand, within Rru_A1297at 1531.330 kb on - strand, within Rru_A1297at 1531.399 kb on - strand, within Rru_A1297at 1531.660 kb on + strand, within Rru_A1298at 1531.661 kb on - strand, within Rru_A1298at 1531.661 kb on - strand, within Rru_A1298at 1531.680 kb on - strand, within Rru_A1298at 1531.822 kb on + strand, within Rru_A1298at 1531.822 kb on + strand, within Rru_A1298at 1531.822 kb on + strand, within Rru_A1298at 1531.822 kb on + strand, within Rru_A1298at 1531.822 kb on + strand, within Rru_A1298at 1531.823 kb on - strand, within Rru_A1298at 1532.265 kb on - strandat 1532.349 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinate (C)_noKan
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1,529,844 - Rru_A1295 0.72 +0.5
1,529,858 + Rru_A1295 0.74 -1.0
1,529,858 + Rru_A1295 0.74 -0.6
1,529,859 - Rru_A1295 0.74 +0.2
1,529,859 - Rru_A1295 0.74 -0.2
1,529,921 + Rru_A1295 0.81 -0.7
1,529,921 + Rru_A1295 0.81 -0.1
1,529,922 - Rru_A1295 0.81 -0.6
1,529,922 - Rru_A1295 0.81 +0.3
1,530,086 + -0.1
1,530,086 + +1.5
1,530,087 - +0.4
1,530,376 + Rru_A1296 0.33 +1.0
1,530,377 - Rru_A1296 0.33 -0.1
1,530,377 - Rru_A1296 0.33 -0.8
1,530,377 - Rru_A1296 0.33 -0.2
1,530,379 + Rru_A1296 0.33 -0.2
1,530,379 + Rru_A1296 0.33 +0.3
1,530,379 + Rru_A1296 0.33 +0.4
1,530,380 - Rru_A1296 0.33 +0.5
1,530,380 - Rru_A1296 0.33 -0.2
1,530,380 - Rru_A1296 0.33 -0.0
1,530,380 - Rru_A1296 0.33 +0.4
1,530,457 + Rru_A1296 0.45 +0.1
1,530,457 + Rru_A1296 0.45 -0.4
1,530,457 + Rru_A1296 0.45 -0.3
1,530,457 + Rru_A1296 0.45 -1.2
1,530,457 + Rru_A1296 0.45 +1.0
1,530,457 + Rru_A1296 0.45 -0.2
1,530,457 + Rru_A1296 0.45 -0.3
1,530,458 - Rru_A1296 0.45 +0.3
1,530,458 - Rru_A1296 0.45 -1.2
1,530,458 - Rru_A1296 0.45 +0.2
1,530,458 - Rru_A1296 0.45 -0.3
1,530,718 + Rru_A1296 0.85 +0.4
1,530,718 + Rru_A1296 0.85 +0.1
1,530,718 + Rru_A1296 0.85 -0.9
1,530,718 + Rru_A1296 0.85 +0.5
1,530,719 - Rru_A1296 0.85 -0.0
1,530,719 - Rru_A1296 0.85 -0.7
1,530,719 - Rru_A1296 0.85 +1.1
1,530,719 - Rru_A1296 0.85 -0.1
1,530,719 - Rru_A1296 0.85 -0.1
1,530,719 - Rru_A1296 0.85 -0.1
1,530,719 - Rru_A1296 0.85 -0.3
1,530,721 - Rru_A1296 0.85 +0.2
1,530,721 - Rru_A1296 0.85 -0.1
1,530,740 - Rru_A1296 0.88 -0.6
1,530,740 - Rru_A1296 0.88 +0.0
1,530,747 + Rru_A1296 0.89 +0.0
1,530,748 - Rru_A1296 0.89 +0.5
1,530,984 + Rru_A1297 0.25 -0.9
1,530,985 - Rru_A1297 0.25 -0.1
1,530,985 - Rru_A1297 0.25 +0.2
1,530,985 - Rru_A1297 0.25 -0.4
1,530,986 + Rru_A1297 0.25 +0.2
1,530,987 - Rru_A1297 0.25 -0.3
1,531,035 + Rru_A1297 0.32 -0.5
1,531,035 + Rru_A1297 0.32 +0.2
1,531,036 - Rru_A1297 0.33 -0.0
1,531,036 - Rru_A1297 0.33 -0.3
1,531,104 + Rru_A1297 0.43 -0.0
1,531,104 + Rru_A1297 0.43 -0.1
1,531,116 + Rru_A1297 0.44 +1.4
1,531,164 + Rru_A1297 0.51 -0.5
1,531,164 + Rru_A1297 0.51 +0.3
1,531,165 - Rru_A1297 0.51 -0.6
1,531,165 - Rru_A1297 0.51 +0.5
1,531,165 - Rru_A1297 0.51 +0.7
1,531,266 - Rru_A1297 0.66 +1.2
1,531,266 - Rru_A1297 0.66 +0.2
1,531,266 - Rru_A1297 0.66 +1.3
1,531,329 + Rru_A1297 0.75 +0.2
1,531,329 + Rru_A1297 0.75 -1.3
1,531,330 - Rru_A1297 0.76 -0.3
1,531,399 - Rru_A1297 0.86 +0.6
1,531,660 + Rru_A1298 0.21 +0.2
1,531,661 - Rru_A1298 0.21 +0.0
1,531,661 - Rru_A1298 0.21 -0.2
1,531,680 - Rru_A1298 0.23 +0.9
1,531,822 + Rru_A1298 0.41 +0.7
1,531,822 + Rru_A1298 0.41 +0.3
1,531,822 + Rru_A1298 0.41 -0.5
1,531,822 + Rru_A1298 0.41 -0.3
1,531,822 + Rru_A1298 0.41 +0.2
1,531,823 - Rru_A1298 0.41 -1.0
1,532,265 - -0.2
1,532,349 - -0.1

Or see this region's nucleotide sequence