Experiment: Succinate (C)_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0857 and Rru_A0858 are separated by 478 nucleotides Rru_A0858 and Rru_A0859 are separated by 26 nucleotides
Rru_A0857: Rru_A0857 - Sulfotransferase (NCBI), at 1,021,052 to 1,021,921
_A0857
Rru_A0858: Rru_A0858 - Drug resistance transporter EmrB/QacA subfamily (NCBI), at 1,022,400 to 1,023,947
_A0858
Rru_A0859: Rru_A0859 - Secretion protein HlyD (NCBI), at 1,023,974 to 1,025,182
_A0859
Position (kb) 1022
1023
1024 Strain fitness (log2 ratio) -2
-1
0
1 at 1021.514 kb on + strand, within Rru_A0857 at 1021.665 kb on + strand, within Rru_A0857 at 1021.720 kb on + strand, within Rru_A0857 at 1021.720 kb on + strand, within Rru_A0857 at 1021.720 kb on + strand, within Rru_A0857 at 1021.720 kb on + strand, within Rru_A0857 at 1021.721 kb on - strand, within Rru_A0857 at 1021.848 kb on + strand at 1021.848 kb on + strand at 1021.915 kb on + strand at 1021.915 kb on + strand at 1022.249 kb on + strand at 1022.250 kb on - strand at 1022.250 kb on - strand at 1022.250 kb on - strand at 1022.649 kb on + strand, within Rru_A0858 at 1022.653 kb on + strand, within Rru_A0858 at 1022.654 kb on - strand, within Rru_A0858 at 1022.654 kb on - strand, within Rru_A0858 at 1022.654 kb on - strand, within Rru_A0858 at 1022.741 kb on - strand, within Rru_A0858 at 1023.038 kb on + strand, within Rru_A0858 at 1023.100 kb on + strand, within Rru_A0858 at 1023.427 kb on + strand, within Rru_A0858 at 1023.428 kb on - strand, within Rru_A0858 at 1023.428 kb on - strand, within Rru_A0858 at 1023.428 kb on - strand, within Rru_A0858 at 1023.550 kb on + strand, within Rru_A0858 at 1023.551 kb on - strand, within Rru_A0858 at 1023.551 kb on - strand, within Rru_A0858 at 1023.551 kb on - strand, within Rru_A0858 at 1023.551 kb on - strand, within Rru_A0858 at 1024.353 kb on + strand, within Rru_A0859 at 1024.353 kb on + strand, within Rru_A0859 at 1024.353 kb on + strand, within Rru_A0859 at 1024.353 kb on + strand, within Rru_A0859 at 1024.354 kb on - strand, within Rru_A0859 at 1024.354 kb on - strand, within Rru_A0859 at 1024.354 kb on - strand, within Rru_A0859 at 1024.354 kb on - strand, within Rru_A0859 at 1024.354 kb on - strand, within Rru_A0859 at 1024.354 kb on - strand, within Rru_A0859 at 1024.354 kb on - strand, within Rru_A0859 at 1024.354 kb on - strand, within Rru_A0859 at 1024.560 kb on + strand, within Rru_A0859 at 1024.560 kb on + strand, within Rru_A0859 at 1024.560 kb on + strand, within Rru_A0859 at 1024.560 kb on + strand, within Rru_A0859 at 1024.560 kb on + strand, within Rru_A0859 at 1024.561 kb on - strand, within Rru_A0859 at 1024.561 kb on - strand, within Rru_A0859 at 1024.561 kb on - strand, within Rru_A0859
Per-strain Table
Position Strand Gene LocusTag Fraction Succinate (C)_noKan remove 1,021,514 + Rru_A0857 0.53 -0.1 1,021,665 + Rru_A0857 0.70 -0.1 1,021,720 + Rru_A0857 0.77 +0.3 1,021,720 + Rru_A0857 0.77 +0.4 1,021,720 + Rru_A0857 0.77 +1.1 1,021,720 + Rru_A0857 0.77 +0.4 1,021,721 - Rru_A0857 0.77 -1.4 1,021,848 + -0.0 1,021,848 + -0.2 1,021,915 + +0.1 1,021,915 + +0.4 1,022,249 + +0.5 1,022,250 - +0.4 1,022,250 - +0.1 1,022,250 - -0.3 1,022,649 + Rru_A0858 0.16 +0.1 1,022,653 + Rru_A0858 0.16 -0.2 1,022,654 - Rru_A0858 0.16 -0.0 1,022,654 - Rru_A0858 0.16 +0.0 1,022,654 - Rru_A0858 0.16 +0.2 1,022,741 - Rru_A0858 0.22 +0.2 1,023,038 + Rru_A0858 0.41 -0.2 1,023,100 + Rru_A0858 0.45 +0.4 1,023,427 + Rru_A0858 0.66 -1.6 1,023,428 - Rru_A0858 0.66 +0.9 1,023,428 - Rru_A0858 0.66 +0.3 1,023,428 - Rru_A0858 0.66 +0.4 1,023,550 + Rru_A0858 0.74 +0.2 1,023,551 - Rru_A0858 0.74 +1.6 1,023,551 - Rru_A0858 0.74 +0.5 1,023,551 - Rru_A0858 0.74 +0.5 1,023,551 - Rru_A0858 0.74 +0.5 1,024,353 + Rru_A0859 0.31 -0.1 1,024,353 + Rru_A0859 0.31 -1.0 1,024,353 + Rru_A0859 0.31 -0.2 1,024,353 + Rru_A0859 0.31 +0.1 1,024,354 - Rru_A0859 0.31 -0.2 1,024,354 - Rru_A0859 0.31 -0.1 1,024,354 - Rru_A0859 0.31 +0.1 1,024,354 - Rru_A0859 0.31 +0.1 1,024,354 - Rru_A0859 0.31 +0.0 1,024,354 - Rru_A0859 0.31 +1.0 1,024,354 - Rru_A0859 0.31 -0.9 1,024,354 - Rru_A0859 0.31 -2.1 1,024,560 + Rru_A0859 0.48 -0.7 1,024,560 + Rru_A0859 0.48 -0.0 1,024,560 + Rru_A0859 0.48 +0.6 1,024,560 + Rru_A0859 0.48 +0.2 1,024,560 + Rru_A0859 0.48 +0.1 1,024,561 - Rru_A0859 0.49 -1.1 1,024,561 - Rru_A0859 0.49 -0.5 1,024,561 - Rru_A0859 0.49 -1.2
Or see this region's nucleotide sequence