Experiment: Succinate (C)_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0394 and Rru_A0395 are separated by 240 nucleotides Rru_A0395 and Rru_A0396 are separated by 170 nucleotides
Rru_A0394: Rru_A0394 - Amino-acid N-acetyltransferase (NCBI), at 469,734 to 470,972
_A0394
Rru_A0395: Rru_A0395 - PpiC-type peptidyl-prolyl cis-trans isomerase (NCBI), at 471,213 to 472,139
_A0395
Rru_A0396: Rru_A0396 - Diaminopimelate decarboxylase (NCBI), at 472,310 to 473,587
_A0396
Position (kb) 471
472
473 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 470.371 kb on + strand, within Rru_A0394 at 470.371 kb on + strand, within Rru_A0394 at 470.482 kb on + strand, within Rru_A0394 at 470.483 kb on - strand, within Rru_A0394 at 470.483 kb on - strand, within Rru_A0394 at 470.875 kb on + strand at 470.891 kb on + strand at 470.891 kb on + strand at 470.891 kb on + strand at 471.027 kb on + strand at 471.027 kb on + strand at 471.028 kb on - strand at 471.350 kb on + strand, within Rru_A0395 at 471.748 kb on + strand, within Rru_A0395 at 471.800 kb on + strand, within Rru_A0395 at 471.800 kb on + strand, within Rru_A0395 at 471.800 kb on + strand, within Rru_A0395 at 471.801 kb on - strand, within Rru_A0395 at 471.801 kb on - strand, within Rru_A0395 at 471.802 kb on + strand, within Rru_A0395 at 471.802 kb on + strand, within Rru_A0395 at 471.802 kb on + strand, within Rru_A0395 at 471.802 kb on + strand, within Rru_A0395 at 471.802 kb on + strand, within Rru_A0395 at 471.803 kb on - strand, within Rru_A0395 at 471.803 kb on - strand, within Rru_A0395 at 471.803 kb on - strand, within Rru_A0395 at 471.803 kb on - strand, within Rru_A0395 at 471.934 kb on + strand, within Rru_A0395 at 471.934 kb on + strand, within Rru_A0395 at 471.934 kb on + strand, within Rru_A0395 at 471.934 kb on + strand, within Rru_A0395 at 471.935 kb on - strand, within Rru_A0395 at 471.935 kb on - strand, within Rru_A0395 at 472.255 kb on + strand at 472.255 kb on + strand at 472.255 kb on + strand at 472.256 kb on - strand at 472.256 kb on - strand at 472.294 kb on + strand at 472.294 kb on + strand at 472.311 kb on + strand at 472.311 kb on + strand at 472.311 kb on + strand at 472.311 kb on + strand at 472.312 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinate (C)_noKan remove 470,371 + Rru_A0394 0.51 -2.7 470,371 + Rru_A0394 0.51 -3.0 470,482 + Rru_A0394 0.60 -2.2 470,483 - Rru_A0394 0.60 -4.2 470,483 - Rru_A0394 0.60 -1.7 470,875 + -4.6 470,891 + -3.1 470,891 + -0.2 470,891 + -4.6 471,027 + -0.4 471,027 + -0.6 471,028 - +0.0 471,350 + Rru_A0395 0.15 +0.1 471,748 + Rru_A0395 0.58 -0.3 471,800 + Rru_A0395 0.63 -0.1 471,800 + Rru_A0395 0.63 +0.1 471,800 + Rru_A0395 0.63 -1.2 471,801 - Rru_A0395 0.63 -0.7 471,801 - Rru_A0395 0.63 -0.8 471,802 + Rru_A0395 0.64 -0.4 471,802 + Rru_A0395 0.64 -0.7 471,802 + Rru_A0395 0.64 -2.0 471,802 + Rru_A0395 0.64 -1.1 471,802 + Rru_A0395 0.64 -0.2 471,803 - Rru_A0395 0.64 -0.4 471,803 - Rru_A0395 0.64 -0.1 471,803 - Rru_A0395 0.64 -0.1 471,803 - Rru_A0395 0.64 +0.3 471,934 + Rru_A0395 0.78 +1.3 471,934 + Rru_A0395 0.78 -0.0 471,934 + Rru_A0395 0.78 -0.1 471,934 + Rru_A0395 0.78 -0.1 471,935 - Rru_A0395 0.78 -0.5 471,935 - Rru_A0395 0.78 +0.0 472,255 + +0.4 472,255 + +0.1 472,255 + +0.1 472,256 - +1.3 472,256 - +0.4 472,294 + +0.5 472,294 + +0.3 472,311 + -0.5 472,311 + -0.1 472,311 + +0.6 472,311 + -2.1 472,312 - -0.3
Or see this region's nucleotide sequence