Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.70.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.69.1 and Xcc-8004.70.1 are separated by 66 nucleotidesXcc-8004.70.1 and Xcc-8004.71.1 overlap by 4 nucleotidesXcc-8004.71.1 and Xcc-8004.73.1 are separated by 325 nucleotides Xcc-8004.69.1: Xcc-8004.69.1 - COG1272: Predicted membrane protein hemolysin III homolog, at 72,923 to 73,585 Xcc-8004.69.1 Xcc-8004.70.1: Xcc-8004.70.1 - putative; ORF located using Glimmer/Genemark, at 73,652 to 73,969 Xcc-8004.70.1 Xcc-8004.71.1: Xcc-8004.71.1 - hypothetical protein, at 73,966 to 74,343 Xcc-8004.71.1 Xcc-8004.73.1: Xcc-8004.73.1 - putative; ORF located using Glimmer/Genemark, at 74,669 to 75,382 Xcc-8004.73.1 Position (kb) 73 74Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 72.688 kb on + strandat 72.688 kb on + strandat 72.689 kb on - strandat 72.719 kb on + strandat 72.720 kb on - strandat 72.720 kb on - strandat 72.956 kb on + strandat 72.956 kb on + strandat 72.956 kb on + strandat 72.956 kb on + strandat 72.957 kb on - strandat 72.957 kb on - strandat 72.957 kb on - strandat 73.088 kb on + strand, within Xcc-8004.69.1at 73.089 kb on - strand, within Xcc-8004.69.1at 73.130 kb on + strand, within Xcc-8004.69.1at 73.130 kb on + strand, within Xcc-8004.69.1at 73.130 kb on + strand, within Xcc-8004.69.1at 73.130 kb on + strand, within Xcc-8004.69.1at 73.131 kb on - strand, within Xcc-8004.69.1at 73.131 kb on - strand, within Xcc-8004.69.1at 73.211 kb on + strand, within Xcc-8004.69.1at 73.211 kb on + strand, within Xcc-8004.69.1at 73.212 kb on - strand, within Xcc-8004.69.1at 73.308 kb on + strand, within Xcc-8004.69.1at 73.349 kb on + strand, within Xcc-8004.69.1at 73.349 kb on + strand, within Xcc-8004.69.1at 73.349 kb on + strand, within Xcc-8004.69.1at 73.349 kb on + strand, within Xcc-8004.69.1at 73.349 kb on + strand, within Xcc-8004.69.1at 73.349 kb on + strand, within Xcc-8004.69.1at 73.349 kb on + strand, within Xcc-8004.69.1at 73.349 kb on + strand, within Xcc-8004.69.1at 73.349 kb on + strand, within Xcc-8004.69.1at 73.350 kb on - strand, within Xcc-8004.69.1at 73.350 kb on - strand, within Xcc-8004.69.1at 73.350 kb on - strand, within Xcc-8004.69.1at 73.350 kb on - strand, within Xcc-8004.69.1at 73.350 kb on - strand, within Xcc-8004.69.1at 73.350 kb on - strand, within Xcc-8004.69.1at 73.350 kb on - strand, within Xcc-8004.69.1at 73.350 kb on - strand, within Xcc-8004.69.1at 73.350 kb on - strand, within Xcc-8004.69.1at 73.350 kb on - strand, within Xcc-8004.69.1at 73.350 kb on - strand, within Xcc-8004.69.1at 73.448 kb on + strand, within Xcc-8004.69.1at 73.448 kb on + strand, within Xcc-8004.69.1at 73.448 kb on + strand, within Xcc-8004.69.1at 73.448 kb on + strand, within Xcc-8004.69.1at 73.449 kb on - strand, within Xcc-8004.69.1at 73.449 kb on - strand, within Xcc-8004.69.1at 73.469 kb on + strand, within Xcc-8004.69.1at 73.469 kb on + strand, within Xcc-8004.69.1at 73.469 kb on + strand, within Xcc-8004.69.1at 73.469 kb on + strand, within Xcc-8004.69.1at 73.469 kb on + strand, within Xcc-8004.69.1at 73.469 kb on + strand, within Xcc-8004.69.1at 73.469 kb on + strand, within Xcc-8004.69.1at 73.469 kb on + strand, within Xcc-8004.69.1at 73.469 kb on + strand, within Xcc-8004.69.1at 73.469 kb on + strand, within Xcc-8004.69.1at 73.470 kb on - strand, within Xcc-8004.69.1at 73.470 kb on - strand, within Xcc-8004.69.1at 73.470 kb on - strand, within Xcc-8004.69.1at 73.470 kb on - strand, within Xcc-8004.69.1at 73.490 kb on + strand, within Xcc-8004.69.1at 73.490 kb on + strand, within Xcc-8004.69.1at 73.491 kb on - strand, within Xcc-8004.69.1at 73.491 kb on - strand, within Xcc-8004.69.1at 73.583 kb on + strandat 73.583 kb on + strandat 73.584 kb on - strandat 73.584 kb on - strandat 73.615 kb on + strandat 73.616 kb on - strandat 73.616 kb on - strandat 73.616 kb on - strandat 73.631 kb on + strandat 73.653 kb on + strandat 73.653 kb on + strandat 73.654 kb on - strandat 73.654 kb on - strandat 73.654 kb on - strandat 73.654 kb on - strandat 73.654 kb on - strandat 73.654 kb on - strandat 73.697 kb on + strand, within Xcc-8004.70.1at 73.697 kb on + strand, within Xcc-8004.70.1at 73.697 kb on + strand, within Xcc-8004.70.1at 73.698 kb on - strand, within Xcc-8004.70.1at 73.737 kb on + strand, within Xcc-8004.70.1at 73.738 kb on - strand, within Xcc-8004.70.1at 73.749 kb on + strand, within Xcc-8004.70.1at 73.749 kb on + strand, within Xcc-8004.70.1at 73.749 kb on + strand, within Xcc-8004.70.1at 73.750 kb on - strand, within Xcc-8004.70.1at 73.750 kb on - strand, within Xcc-8004.70.1at 73.750 kb on - strand, within Xcc-8004.70.1at 73.750 kb on - strand, within Xcc-8004.70.1at 73.750 kb on - strand, within Xcc-8004.70.1at 73.750 kb on - strand, within Xcc-8004.70.1at 73.803 kb on + strand, within Xcc-8004.70.1at 73.803 kb on + strand, within Xcc-8004.70.1at 73.803 kb on + strand, within Xcc-8004.70.1at 73.803 kb on + strand, within Xcc-8004.70.1at 73.803 kb on + strand, within Xcc-8004.70.1at 73.803 kb on + strand, within Xcc-8004.70.1at 73.803 kb on + strand, within Xcc-8004.70.1at 73.803 kb on + strand, within Xcc-8004.70.1at 73.804 kb on - strand, within Xcc-8004.70.1at 73.804 kb on - strand, within Xcc-8004.70.1at 73.804 kb on - strand, within Xcc-8004.70.1at 73.804 kb on - strand, within Xcc-8004.70.1at 73.804 kb on - strand, within Xcc-8004.70.1at 73.872 kb on + strand, within Xcc-8004.70.1at 73.872 kb on + strand, within Xcc-8004.70.1at 73.872 kb on + strand, within Xcc-8004.70.1at 73.872 kb on + strand, within Xcc-8004.70.1at 73.872 kb on + strand, within Xcc-8004.70.1at 73.872 kb on + strand, within Xcc-8004.70.1at 73.873 kb on - strand, within Xcc-8004.70.1at 73.873 kb on - strand, within Xcc-8004.70.1at 74.120 kb on + strand, within Xcc-8004.71.1at 74.120 kb on + strand, within Xcc-8004.71.1at 74.120 kb on + strand, within Xcc-8004.71.1at 74.121 kb on - strand, within Xcc-8004.71.1at 74.121 kb on - strand, within Xcc-8004.71.1at 74.325 kb on + strandat 74.326 kb on - strandat 74.453 kb on + strandat 74.461 kb on - strandat 74.471 kb on - strandat 74.471 kb on - strandat 74.471 kb on - strandat 74.603 kb on + strandat 74.642 kb on + strandat 74.821 kb on - strand, within Xcc-8004.73.1at 74.857 kb on - strand, within Xcc-8004.73.1at 74.919 kb on + strand, within Xcc-8004.73.1at 74.919 kb on + strand, within Xcc-8004.73.1at 74.920 kb on - strand, within Xcc-8004.73.1at 74.920 kb on - strand, within Xcc-8004.73.1at 74.920 kb on - strand, within Xcc-8004.73.1at 74.920 kb on - strand, within Xcc-8004.73.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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72,688 + -0.1
72,688 + +0.5
72,689 - -1.4
72,719 + -1.4
72,720 - -1.0
72,720 - -0.1
72,956 + +0.3
72,956 + -0.9
72,956 + +1.0
72,956 + -0.4
72,957 - +1.0
72,957 - +3.3
72,957 - +1.1
73,088 + Xcc-8004.69.1 0.25 -1.1
73,089 - Xcc-8004.69.1 0.25 +0.6
73,130 + Xcc-8004.69.1 0.31 +0.7
73,130 + Xcc-8004.69.1 0.31 -2.5
73,130 + Xcc-8004.69.1 0.31 -0.8
73,130 + Xcc-8004.69.1 0.31 -1.5
73,131 - Xcc-8004.69.1 0.31 +2.6
73,131 - Xcc-8004.69.1 0.31 +1.6
73,211 + Xcc-8004.69.1 0.43 -1.0
73,211 + Xcc-8004.69.1 0.43 +1.3
73,212 - Xcc-8004.69.1 0.44 -0.8
73,308 + Xcc-8004.69.1 0.58 +1.6
73,349 + Xcc-8004.69.1 0.64 +0.4
73,349 + Xcc-8004.69.1 0.64 +0.4
73,349 + Xcc-8004.69.1 0.64 +1.1
73,349 + Xcc-8004.69.1 0.64 -0.0
73,349 + Xcc-8004.69.1 0.64 +0.1
73,349 + Xcc-8004.69.1 0.64 -0.0
73,349 + Xcc-8004.69.1 0.64 +0.3
73,349 + Xcc-8004.69.1 0.64 +0.3
73,349 + Xcc-8004.69.1 0.64 +0.8
73,350 - Xcc-8004.69.1 0.64 +1.8
73,350 - Xcc-8004.69.1 0.64 -0.2
73,350 - Xcc-8004.69.1 0.64 -0.7
73,350 - Xcc-8004.69.1 0.64 +0.0
73,350 - Xcc-8004.69.1 0.64 +1.7
73,350 - Xcc-8004.69.1 0.64 -0.1
73,350 - Xcc-8004.69.1 0.64 +0.4
73,350 - Xcc-8004.69.1 0.64 -0.3
73,350 - Xcc-8004.69.1 0.64 -0.9
73,350 - Xcc-8004.69.1 0.64 -0.2
73,350 - Xcc-8004.69.1 0.64 -0.6
73,448 + Xcc-8004.69.1 0.79 -0.8
73,448 + Xcc-8004.69.1 0.79 +0.8
73,448 + Xcc-8004.69.1 0.79 -1.4
73,448 + Xcc-8004.69.1 0.79 +0.5
73,449 - Xcc-8004.69.1 0.79 -1.1
73,449 - Xcc-8004.69.1 0.79 +0.3
73,469 + Xcc-8004.69.1 0.82 +0.3
73,469 + Xcc-8004.69.1 0.82 +0.2
73,469 + Xcc-8004.69.1 0.82 -1.1
73,469 + Xcc-8004.69.1 0.82 -0.5
73,469 + Xcc-8004.69.1 0.82 +0.2
73,469 + Xcc-8004.69.1 0.82 -0.8
73,469 + Xcc-8004.69.1 0.82 -0.9
73,469 + Xcc-8004.69.1 0.82 -0.3
73,469 + Xcc-8004.69.1 0.82 -1.6
73,469 + Xcc-8004.69.1 0.82 +1.1
73,470 - Xcc-8004.69.1 0.83 -0.7
73,470 - Xcc-8004.69.1 0.83 +0.3
73,470 - Xcc-8004.69.1 0.83 -0.8
73,470 - Xcc-8004.69.1 0.83 +3.1
73,490 + Xcc-8004.69.1 0.86 -2.0
73,490 + Xcc-8004.69.1 0.86 -0.0
73,491 - Xcc-8004.69.1 0.86 +2.5
73,491 - Xcc-8004.69.1 0.86 +0.2
73,583 + -1.6
73,583 + +0.8
73,584 - -3.1
73,584 - -2.0
73,615 + +0.3
73,616 - +0.7
73,616 - +0.4
73,616 - -0.2
73,631 + -0.2
73,653 + -1.5
73,653 + +0.1
73,654 - +0.8
73,654 - -0.4
73,654 - -1.7
73,654 - -0.7
73,654 - +0.5
73,654 - +1.2
73,697 + Xcc-8004.70.1 0.14 -0.9
73,697 + Xcc-8004.70.1 0.14 -0.3
73,697 + Xcc-8004.70.1 0.14 +0.1
73,698 - Xcc-8004.70.1 0.14 +1.1
73,737 + Xcc-8004.70.1 0.27 +2.2
73,738 - Xcc-8004.70.1 0.27 -0.4
73,749 + Xcc-8004.70.1 0.31 -1.1
73,749 + Xcc-8004.70.1 0.31 -0.1
73,749 + Xcc-8004.70.1 0.31 -1.8
73,750 - Xcc-8004.70.1 0.31 -2.1
73,750 - Xcc-8004.70.1 0.31 -0.9
73,750 - Xcc-8004.70.1 0.31 +0.6
73,750 - Xcc-8004.70.1 0.31 +0.7
73,750 - Xcc-8004.70.1 0.31 -0.6
73,750 - Xcc-8004.70.1 0.31 +0.4
73,803 + Xcc-8004.70.1 0.47 +0.5
73,803 + Xcc-8004.70.1 0.47 -0.4
73,803 + Xcc-8004.70.1 0.47 +0.5
73,803 + Xcc-8004.70.1 0.47 +1.5
73,803 + Xcc-8004.70.1 0.47 -2.5
73,803 + Xcc-8004.70.1 0.47 -0.7
73,803 + Xcc-8004.70.1 0.47 -0.1
73,803 + Xcc-8004.70.1 0.47 -0.7
73,804 - Xcc-8004.70.1 0.48 -0.1
73,804 - Xcc-8004.70.1 0.48 -2.0
73,804 - Xcc-8004.70.1 0.48 +0.2
73,804 - Xcc-8004.70.1 0.48 +1.1
73,804 - Xcc-8004.70.1 0.48 +0.3
73,872 + Xcc-8004.70.1 0.69 +0.1
73,872 + Xcc-8004.70.1 0.69 -0.1
73,872 + Xcc-8004.70.1 0.69 -0.8
73,872 + Xcc-8004.70.1 0.69 -2.6
73,872 + Xcc-8004.70.1 0.69 +1.5
73,872 + Xcc-8004.70.1 0.69 +0.3
73,873 - Xcc-8004.70.1 0.69 +0.1
73,873 - Xcc-8004.70.1 0.69 -1.4
74,120 + Xcc-8004.71.1 0.41 -1.2
74,120 + Xcc-8004.71.1 0.41 +0.6
74,120 + Xcc-8004.71.1 0.41 -0.7
74,121 - Xcc-8004.71.1 0.41 +0.2
74,121 - Xcc-8004.71.1 0.41 +1.8
74,325 + -0.6
74,326 - -1.4
74,453 + -2.4
74,461 - -0.7
74,471 - +2.2
74,471 - +0.7
74,471 - -0.7
74,603 + -1.7
74,642 + -0.8
74,821 - Xcc-8004.73.1 0.21 -3.2
74,857 - Xcc-8004.73.1 0.26 +1.0
74,919 + Xcc-8004.73.1 0.35 -0.8
74,919 + Xcc-8004.73.1 0.35 -0.7
74,920 - Xcc-8004.73.1 0.35 -0.8
74,920 - Xcc-8004.73.1 0.35 +2.1
74,920 - Xcc-8004.73.1 0.35 -2.8
74,920 - Xcc-8004.73.1 0.35 +0.1

Or see this region's nucleotide sequence