Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.693.1 and Xcc-8004.694.1 are separated by 51 nucleotides Xcc-8004.694.1 and Xcc-8004.696.1 are separated by 190 nucleotides Xcc-8004.696.1 and Xcc-8004.698.1 are separated by 181 nucleotides
Xcc-8004.693.1: Xcc-8004.693.1 - FIG01210708: hypothetical protein, at 642,772 to 644,886
Xcc-8004.693.1
Xcc-8004.694.1: Xcc-8004.694.1 - hypothetical protein, at 644,938 to 645,069
Xcc-8004.694.1
Xcc-8004.696.1: Xcc-8004.696.1 - FIG01212883: hypothetical protein, at 645,260 to 647,416
Xcc-8004.696.1
Xcc-8004.698.1: Xcc-8004.698.1 - TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins, at 647,598 to 650,552
Xcc-8004.698.1
Position (kb) 645
646
647
648 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 644.632 kb on + strand, within Xcc-8004.693.1 at 644.633 kb on - strand, within Xcc-8004.693.1 at 644.633 kb on - strand, within Xcc-8004.693.1 at 644.633 kb on - strand, within Xcc-8004.693.1 at 644.808 kb on + strand at 644.808 kb on + strand at 644.809 kb on - strand at 644.974 kb on - strand, within Xcc-8004.694.1 at 644.974 kb on - strand, within Xcc-8004.694.1 at 644.974 kb on - strand, within Xcc-8004.694.1 at 644.974 kb on - strand, within Xcc-8004.694.1 at 645.041 kb on + strand, within Xcc-8004.694.1 at 645.041 kb on + strand, within Xcc-8004.694.1 at 645.041 kb on + strand, within Xcc-8004.694.1 at 645.042 kb on - strand, within Xcc-8004.694.1 at 645.103 kb on + strand at 645.103 kb on + strand at 645.103 kb on + strand at 645.104 kb on - strand at 645.104 kb on - strand at 645.104 kb on - strand at 645.104 kb on - strand at 645.124 kb on - strand at 645.124 kb on - strand at 645.144 kb on + strand at 645.144 kb on + strand at 645.145 kb on - strand at 645.145 kb on - strand at 645.145 kb on - strand at 645.148 kb on + strand at 645.148 kb on + strand at 645.149 kb on - strand at 645.169 kb on + strand at 645.169 kb on + strand at 645.169 kb on + strand at 645.169 kb on + strand at 645.170 kb on - strand at 645.170 kb on - strand at 645.170 kb on - strand at 645.170 kb on - strand at 645.170 kb on - strand at 645.212 kb on + strand at 645.213 kb on - strand at 645.213 kb on - strand at 645.420 kb on + strand at 645.420 kb on + strand at 645.421 kb on - strand at 645.421 kb on - strand at 645.456 kb on + strand at 645.553 kb on + strand, within Xcc-8004.696.1 at 645.553 kb on + strand, within Xcc-8004.696.1 at 645.554 kb on - strand, within Xcc-8004.696.1 at 645.554 kb on - strand, within Xcc-8004.696.1 at 645.554 kb on - strand, within Xcc-8004.696.1 at 645.554 kb on - strand, within Xcc-8004.696.1 at 645.554 kb on - strand, within Xcc-8004.696.1 at 645.649 kb on - strand, within Xcc-8004.696.1 at 645.682 kb on + strand, within Xcc-8004.696.1 at 645.683 kb on - strand, within Xcc-8004.696.1 at 645.845 kb on + strand, within Xcc-8004.696.1 at 645.881 kb on - strand, within Xcc-8004.696.1 at 645.885 kb on + strand, within Xcc-8004.696.1 at 645.885 kb on + strand, within Xcc-8004.696.1 at 645.885 kb on + strand, within Xcc-8004.696.1 at 645.885 kb on + strand, within Xcc-8004.696.1 at 645.885 kb on + strand, within Xcc-8004.696.1 at 645.885 kb on + strand, within Xcc-8004.696.1 at 645.885 kb on + strand, within Xcc-8004.696.1 at 645.885 kb on + strand, within Xcc-8004.696.1 at 645.886 kb on - strand, within Xcc-8004.696.1 at 645.886 kb on - strand, within Xcc-8004.696.1 at 645.886 kb on - strand, within Xcc-8004.696.1 at 645.886 kb on - strand, within Xcc-8004.696.1 at 645.886 kb on - strand, within Xcc-8004.696.1 at 645.886 kb on - strand, within Xcc-8004.696.1 at 645.886 kb on - strand, within Xcc-8004.696.1 at 645.917 kb on + strand, within Xcc-8004.696.1 at 645.917 kb on + strand, within Xcc-8004.696.1 at 645.917 kb on + strand, within Xcc-8004.696.1 at 645.918 kb on - strand, within Xcc-8004.696.1 at 645.956 kb on + strand, within Xcc-8004.696.1 at 645.956 kb on + strand, within Xcc-8004.696.1 at 645.956 kb on + strand, within Xcc-8004.696.1 at 645.957 kb on - strand, within Xcc-8004.696.1 at 646.340 kb on - strand, within Xcc-8004.696.1 at 646.340 kb on - strand, within Xcc-8004.696.1 at 646.340 kb on - strand, within Xcc-8004.696.1 at 646.374 kb on + strand, within Xcc-8004.696.1 at 646.479 kb on + strand, within Xcc-8004.696.1 at 646.480 kb on - strand, within Xcc-8004.696.1 at 646.480 kb on - strand, within Xcc-8004.696.1 at 646.480 kb on - strand, within Xcc-8004.696.1 at 646.508 kb on + strand, within Xcc-8004.696.1 at 646.508 kb on + strand, within Xcc-8004.696.1 at 646.508 kb on + strand, within Xcc-8004.696.1 at 646.509 kb on - strand, within Xcc-8004.696.1 at 646.588 kb on + strand, within Xcc-8004.696.1 at 646.588 kb on + strand, within Xcc-8004.696.1 at 646.589 kb on - strand, within Xcc-8004.696.1 at 646.589 kb on - strand, within Xcc-8004.696.1 at 646.672 kb on + strand, within Xcc-8004.696.1 at 646.673 kb on - strand, within Xcc-8004.696.1 at 646.673 kb on - strand, within Xcc-8004.696.1 at 646.694 kb on + strand, within Xcc-8004.696.1 at 646.694 kb on + strand, within Xcc-8004.696.1 at 646.745 kb on + strand, within Xcc-8004.696.1 at 646.745 kb on + strand, within Xcc-8004.696.1 at 646.746 kb on - strand, within Xcc-8004.696.1 at 646.746 kb on - strand, within Xcc-8004.696.1 at 646.746 kb on - strand, within Xcc-8004.696.1 at 646.746 kb on - strand, within Xcc-8004.696.1 at 646.746 kb on - strand, within Xcc-8004.696.1 at 646.774 kb on + strand, within Xcc-8004.696.1 at 646.775 kb on - strand, within Xcc-8004.696.1 at 646.775 kb on - strand, within Xcc-8004.696.1 at 646.801 kb on + strand, within Xcc-8004.696.1 at 646.801 kb on + strand, within Xcc-8004.696.1 at 646.840 kb on + strand, within Xcc-8004.696.1 at 646.840 kb on + strand, within Xcc-8004.696.1 at 646.841 kb on - strand, within Xcc-8004.696.1 at 646.841 kb on - strand, within Xcc-8004.696.1 at 646.841 kb on - strand, within Xcc-8004.696.1 at 646.841 kb on - strand, within Xcc-8004.696.1 at 646.841 kb on - strand, within Xcc-8004.696.1 at 646.979 kb on + strand, within Xcc-8004.696.1 at 647.039 kb on - strand, within Xcc-8004.696.1 at 647.121 kb on + strand, within Xcc-8004.696.1 at 647.121 kb on + strand, within Xcc-8004.696.1 at 647.121 kb on + strand, within Xcc-8004.696.1 at 647.122 kb on - strand, within Xcc-8004.696.1 at 647.122 kb on - strand, within Xcc-8004.696.1 at 647.122 kb on - strand, within Xcc-8004.696.1 at 647.122 kb on - strand, within Xcc-8004.696.1 at 647.122 kb on - strand, within Xcc-8004.696.1 at 647.156 kb on - strand, within Xcc-8004.696.1 at 647.238 kb on + strand at 647.238 kb on + strand at 647.287 kb on + strand at 647.287 kb on + strand at 647.287 kb on + strand at 647.287 kb on + strand at 647.320 kb on - strand at 647.320 kb on - strand at 647.320 kb on - strand at 647.388 kb on + strand at 647.388 kb on + strand at 647.388 kb on + strand at 647.388 kb on + strand at 647.389 kb on - strand at 647.389 kb on - strand at 647.492 kb on - strand at 647.492 kb on - strand at 647.532 kb on - strand at 647.532 kb on - strand at 647.532 kb on - strand at 647.532 kb on - strand at 647.666 kb on + strand at 647.666 kb on + strand at 647.666 kb on + strand at 647.666 kb on + strand at 647.666 kb on + strand at 647.666 kb on + strand at 647.666 kb on + strand at 647.666 kb on + strand at 647.666 kb on + strand at 647.666 kb on + strand at 647.667 kb on - strand at 647.667 kb on - strand at 647.667 kb on - strand at 647.667 kb on - strand at 647.667 kb on - strand at 647.667 kb on - strand at 647.667 kb on - strand at 647.667 kb on - strand at 647.667 kb on - strand at 647.667 kb on - strand at 647.667 kb on - strand at 647.902 kb on - strand, within Xcc-8004.698.1 at 647.902 kb on - strand, within Xcc-8004.698.1 at 647.966 kb on + strand, within Xcc-8004.698.1 at 647.966 kb on + strand, within Xcc-8004.698.1 at 647.966 kb on + strand, within Xcc-8004.698.1 at 647.966 kb on + strand, within Xcc-8004.698.1 at 647.966 kb on + strand, within Xcc-8004.698.1 at 647.966 kb on + strand, within Xcc-8004.698.1 at 647.967 kb on - strand, within Xcc-8004.698.1 at 648.051 kb on + strand, within Xcc-8004.698.1 at 648.090 kb on + strand, within Xcc-8004.698.1 at 648.091 kb on - strand, within Xcc-8004.698.1 at 648.098 kb on + strand, within Xcc-8004.698.1 at 648.098 kb on + strand, within Xcc-8004.698.1 at 648.098 kb on + strand, within Xcc-8004.698.1 at 648.098 kb on + strand, within Xcc-8004.698.1 at 648.098 kb on + strand, within Xcc-8004.698.1 at 648.098 kb on + strand, within Xcc-8004.698.1 at 648.098 kb on + strand, within Xcc-8004.698.1 at 648.099 kb on - strand, within Xcc-8004.698.1 at 648.099 kb on - strand, within Xcc-8004.698.1 at 648.099 kb on - strand, within Xcc-8004.698.1 at 648.099 kb on - strand, within Xcc-8004.698.1 at 648.156 kb on + strand, within Xcc-8004.698.1 at 648.156 kb on + strand, within Xcc-8004.698.1 at 648.156 kb on + strand, within Xcc-8004.698.1 at 648.156 kb on + strand, within Xcc-8004.698.1 at 648.156 kb on + strand, within Xcc-8004.698.1 at 648.157 kb on - strand, within Xcc-8004.698.1 at 648.157 kb on - strand, within Xcc-8004.698.1 at 648.157 kb on - strand, within Xcc-8004.698.1 at 648.157 kb on - strand, within Xcc-8004.698.1 at 648.157 kb on - strand, within Xcc-8004.698.1 at 648.157 kb on - strand, within Xcc-8004.698.1 at 648.207 kb on + strand, within Xcc-8004.698.1 at 648.208 kb on - strand, within Xcc-8004.698.1 at 648.318 kb on + strand, within Xcc-8004.698.1 at 648.319 kb on - strand, within Xcc-8004.698.1 at 648.396 kb on + strand, within Xcc-8004.698.1 at 648.396 kb on + strand, within Xcc-8004.698.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 644,632 + Xcc-8004.693.1 0.88 +1.0 644,633 - Xcc-8004.693.1 0.88 +0.3 644,633 - Xcc-8004.693.1 0.88 -0.4 644,633 - Xcc-8004.693.1 0.88 -0.2 644,808 + +3.8 644,808 + -0.2 644,809 - -2.1 644,974 - Xcc-8004.694.1 0.27 +1.1 644,974 - Xcc-8004.694.1 0.27 +0.0 644,974 - Xcc-8004.694.1 0.27 +0.1 644,974 - Xcc-8004.694.1 0.27 -1.2 645,041 + Xcc-8004.694.1 0.78 -0.5 645,041 + Xcc-8004.694.1 0.78 -0.1 645,041 + Xcc-8004.694.1 0.78 -1.3 645,042 - Xcc-8004.694.1 0.79 +0.1 645,103 + -0.8 645,103 + -0.2 645,103 + -1.6 645,104 - +1.3 645,104 - +2.3 645,104 - +0.6 645,104 - +0.0 645,124 - -0.5 645,124 - -0.1 645,144 + +1.0 645,144 + +1.9 645,145 - -0.9 645,145 - +1.2 645,145 - +0.6 645,148 + +0.4 645,148 + -0.8 645,149 - +1.0 645,169 + -0.7 645,169 + -1.8 645,169 + +0.3 645,169 + -1.8 645,170 - +0.4 645,170 - +1.4 645,170 - -1.3 645,170 - +0.2 645,170 - +0.9 645,212 + -0.3 645,213 - +0.7 645,213 - +0.2 645,420 + -3.1 645,420 + +0.4 645,421 - -0.5 645,421 - -0.2 645,456 + +0.4 645,553 + Xcc-8004.696.1 0.14 +1.4 645,553 + Xcc-8004.696.1 0.14 -0.8 645,554 - Xcc-8004.696.1 0.14 +0.6 645,554 - Xcc-8004.696.1 0.14 -1.9 645,554 - Xcc-8004.696.1 0.14 -0.6 645,554 - Xcc-8004.696.1 0.14 +0.4 645,554 - Xcc-8004.696.1 0.14 +0.7 645,649 - Xcc-8004.696.1 0.18 -2.1 645,682 + Xcc-8004.696.1 0.20 +0.7 645,683 - Xcc-8004.696.1 0.20 +1.3 645,845 + Xcc-8004.696.1 0.27 +0.3 645,881 - Xcc-8004.696.1 0.29 +0.8 645,885 + Xcc-8004.696.1 0.29 +0.3 645,885 + Xcc-8004.696.1 0.29 +0.0 645,885 + Xcc-8004.696.1 0.29 -0.8 645,885 + Xcc-8004.696.1 0.29 +0.2 645,885 + Xcc-8004.696.1 0.29 +0.2 645,885 + Xcc-8004.696.1 0.29 -0.0 645,885 + Xcc-8004.696.1 0.29 +0.0 645,885 + Xcc-8004.696.1 0.29 -0.0 645,886 - Xcc-8004.696.1 0.29 -0.7 645,886 - Xcc-8004.696.1 0.29 +0.3 645,886 - Xcc-8004.696.1 0.29 +0.3 645,886 - Xcc-8004.696.1 0.29 +0.4 645,886 - Xcc-8004.696.1 0.29 -0.6 645,886 - Xcc-8004.696.1 0.29 +0.8 645,886 - Xcc-8004.696.1 0.29 -1.5 645,917 + Xcc-8004.696.1 0.30 +0.2 645,917 + Xcc-8004.696.1 0.30 -0.1 645,917 + Xcc-8004.696.1 0.30 -0.8 645,918 - Xcc-8004.696.1 0.31 +0.6 645,956 + Xcc-8004.696.1 0.32 +0.4 645,956 + Xcc-8004.696.1 0.32 +0.7 645,956 + Xcc-8004.696.1 0.32 -0.3 645,957 - Xcc-8004.696.1 0.32 -0.2 646,340 - Xcc-8004.696.1 0.50 +0.4 646,340 - Xcc-8004.696.1 0.50 +1.5 646,340 - Xcc-8004.696.1 0.50 -1.3 646,374 + Xcc-8004.696.1 0.52 +0.6 646,479 + Xcc-8004.696.1 0.57 +0.7 646,480 - Xcc-8004.696.1 0.57 -0.3 646,480 - Xcc-8004.696.1 0.57 -0.5 646,480 - Xcc-8004.696.1 0.57 +2.8 646,508 + Xcc-8004.696.1 0.58 +0.6 646,508 + Xcc-8004.696.1 0.58 +0.2 646,508 + Xcc-8004.696.1 0.58 +0.0 646,509 - Xcc-8004.696.1 0.58 +0.9 646,588 + Xcc-8004.696.1 0.62 +1.0 646,588 + Xcc-8004.696.1 0.62 -1.5 646,589 - Xcc-8004.696.1 0.62 -0.8 646,589 - Xcc-8004.696.1 0.62 -2.4 646,672 + Xcc-8004.696.1 0.65 -1.3 646,673 - Xcc-8004.696.1 0.66 +0.5 646,673 - Xcc-8004.696.1 0.66 +0.3 646,694 + Xcc-8004.696.1 0.66 -3.0 646,694 + Xcc-8004.696.1 0.66 -0.7 646,745 + Xcc-8004.696.1 0.69 -0.2 646,745 + Xcc-8004.696.1 0.69 -0.5 646,746 - Xcc-8004.696.1 0.69 +0.6 646,746 - Xcc-8004.696.1 0.69 +0.0 646,746 - Xcc-8004.696.1 0.69 -0.2 646,746 - Xcc-8004.696.1 0.69 -0.1 646,746 - Xcc-8004.696.1 0.69 -1.4 646,774 + Xcc-8004.696.1 0.70 +0.6 646,775 - Xcc-8004.696.1 0.70 -1.5 646,775 - Xcc-8004.696.1 0.70 -0.3 646,801 + Xcc-8004.696.1 0.71 +0.1 646,801 + Xcc-8004.696.1 0.71 -2.1 646,840 + Xcc-8004.696.1 0.73 -2.7 646,840 + Xcc-8004.696.1 0.73 +0.1 646,841 - Xcc-8004.696.1 0.73 +0.2 646,841 - Xcc-8004.696.1 0.73 -1.8 646,841 - Xcc-8004.696.1 0.73 -1.7 646,841 - Xcc-8004.696.1 0.73 +1.7 646,841 - Xcc-8004.696.1 0.73 -0.2 646,979 + Xcc-8004.696.1 0.80 +0.7 647,039 - Xcc-8004.696.1 0.82 -3.2 647,121 + Xcc-8004.696.1 0.86 -0.6 647,121 + Xcc-8004.696.1 0.86 +1.4 647,121 + Xcc-8004.696.1 0.86 -1.6 647,122 - Xcc-8004.696.1 0.86 -0.5 647,122 - Xcc-8004.696.1 0.86 +3.1 647,122 - Xcc-8004.696.1 0.86 -1.3 647,122 - Xcc-8004.696.1 0.86 -0.0 647,122 - Xcc-8004.696.1 0.86 -0.4 647,156 - Xcc-8004.696.1 0.88 +0.6 647,238 + +0.2 647,238 + -0.8 647,287 + +1.3 647,287 + +0.3 647,287 + -0.0 647,287 + -1.2 647,320 - +1.1 647,320 - +1.4 647,320 - +1.2 647,388 + +0.2 647,388 + +1.3 647,388 + +2.4 647,388 + +0.1 647,389 - +0.6 647,389 - -1.9 647,492 - -1.4 647,492 - -0.2 647,532 - -1.0 647,532 - -1.3 647,532 - -0.2 647,532 - +2.4 647,666 + +0.1 647,666 + -0.2 647,666 + +1.0 647,666 + -1.0 647,666 + -0.3 647,666 + -2.1 647,666 + -0.4 647,666 + -0.3 647,666 + +0.2 647,666 + +0.9 647,667 - -0.3 647,667 - -1.0 647,667 - +0.6 647,667 - +0.9 647,667 - -2.2 647,667 - +1.6 647,667 - -0.6 647,667 - -0.6 647,667 - -0.9 647,667 - +0.2 647,667 - -1.0 647,902 - Xcc-8004.698.1 0.10 -0.3 647,902 - Xcc-8004.698.1 0.10 -0.2 647,966 + Xcc-8004.698.1 0.12 -1.4 647,966 + Xcc-8004.698.1 0.12 +0.3 647,966 + Xcc-8004.698.1 0.12 +0.1 647,966 + Xcc-8004.698.1 0.12 +0.4 647,966 + Xcc-8004.698.1 0.12 -0.1 647,966 + Xcc-8004.698.1 0.12 +0.3 647,967 - Xcc-8004.698.1 0.12 +1.4 648,051 + Xcc-8004.698.1 0.15 +0.0 648,090 + Xcc-8004.698.1 0.17 -0.5 648,091 - Xcc-8004.698.1 0.17 +2.1 648,098 + Xcc-8004.698.1 0.17 +0.3 648,098 + Xcc-8004.698.1 0.17 -0.7 648,098 + Xcc-8004.698.1 0.17 -1.1 648,098 + Xcc-8004.698.1 0.17 -0.7 648,098 + Xcc-8004.698.1 0.17 -0.3 648,098 + Xcc-8004.698.1 0.17 +0.2 648,098 + Xcc-8004.698.1 0.17 -0.8 648,099 - Xcc-8004.698.1 0.17 +1.0 648,099 - Xcc-8004.698.1 0.17 +1.1 648,099 - Xcc-8004.698.1 0.17 -0.1 648,099 - Xcc-8004.698.1 0.17 -0.0 648,156 + Xcc-8004.698.1 0.19 -1.2 648,156 + Xcc-8004.698.1 0.19 -1.7 648,156 + Xcc-8004.698.1 0.19 +0.4 648,156 + Xcc-8004.698.1 0.19 -3.0 648,156 + Xcc-8004.698.1 0.19 -2.1 648,157 - Xcc-8004.698.1 0.19 +0.4 648,157 - Xcc-8004.698.1 0.19 -0.3 648,157 - Xcc-8004.698.1 0.19 +0.0 648,157 - Xcc-8004.698.1 0.19 +0.7 648,157 - Xcc-8004.698.1 0.19 -0.2 648,157 - Xcc-8004.698.1 0.19 -0.7 648,207 + Xcc-8004.698.1 0.21 +0.3 648,208 - Xcc-8004.698.1 0.21 +0.6 648,318 + Xcc-8004.698.1 0.24 -2.0 648,319 - Xcc-8004.698.1 0.24 -0.1 648,396 + Xcc-8004.698.1 0.27 -0.1 648,396 + Xcc-8004.698.1 0.27 -2.2
Or see this region's nucleotide sequence