Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.480.1 and Xcc-8004.481.1 are separated by 9 nucleotides Xcc-8004.481.1 and Xcc-8004.482.1 are separated by 27 nucleotides Xcc-8004.482.1 and Xcc-8004.483.1 are separated by 485 nucleotides
Xcc-8004.480.1: Xcc-8004.480.1 - 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2), at 442,664 to 444,025
Xcc-8004.480.1
Xcc-8004.481.1: Xcc-8004.481.1 - Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24), at 444,035 to 444,817
Xcc-8004.481.1
Xcc-8004.482.1: Xcc-8004.482.1 - 4-carboxymuconolactone decarboxylase (EC 4.1.1.44), at 444,845 to 445,249
Xcc-8004.482.1
Xcc-8004.483.1: Xcc-8004.483.1 - Hydrolase, at 445,735 to 446,661
Xcc-8004.483.1
Position (kb) 444
445
446 Strain fitness (log2 ratio) -2
-1
0
1
2 at 444.556 kb on - strand, within Xcc-8004.481.1 at 444.556 kb on - strand, within Xcc-8004.481.1 at 444.575 kb on + strand, within Xcc-8004.481.1 at 444.576 kb on - strand, within Xcc-8004.481.1 at 444.576 kb on - strand, within Xcc-8004.481.1 at 444.576 kb on - strand, within Xcc-8004.481.1 at 444.707 kb on + strand, within Xcc-8004.481.1 at 444.707 kb on + strand, within Xcc-8004.481.1 at 444.729 kb on - strand, within Xcc-8004.481.1 at 445.134 kb on + strand, within Xcc-8004.482.1 at 445.134 kb on + strand, within Xcc-8004.482.1 at 445.134 kb on + strand, within Xcc-8004.482.1 at 445.134 kb on + strand, within Xcc-8004.482.1 at 445.154 kb on + strand, within Xcc-8004.482.1 at 445.155 kb on - strand, within Xcc-8004.482.1 at 445.155 kb on - strand, within Xcc-8004.482.1 at 445.300 kb on - strand at 445.497 kb on + strand at 445.686 kb on + strand at 445.687 kb on - strand at 445.742 kb on + strand at 445.742 kb on + strand at 445.742 kb on + strand at 445.742 kb on + strand at 445.742 kb on + strand at 445.743 kb on - strand at 445.743 kb on - strand at 445.743 kb on - strand at 445.743 kb on - strand at 445.743 kb on - strand at 445.743 kb on - strand at 445.743 kb on - strand at 445.776 kb on + strand at 445.776 kb on + strand at 445.776 kb on + strand at 445.776 kb on + strand at 445.777 kb on - strand at 445.777 kb on - strand at 446.017 kb on + strand, within Xcc-8004.483.1 at 446.017 kb on + strand, within Xcc-8004.483.1 at 446.017 kb on + strand, within Xcc-8004.483.1 at 446.018 kb on - strand, within Xcc-8004.483.1 at 446.164 kb on + strand, within Xcc-8004.483.1 at 446.165 kb on - strand, within Xcc-8004.483.1 at 446.236 kb on + strand, within Xcc-8004.483.1 at 446.237 kb on - strand, within Xcc-8004.483.1 at 446.237 kb on - strand, within Xcc-8004.483.1 at 446.237 kb on - strand, within Xcc-8004.483.1 at 446.237 kb on - strand, within Xcc-8004.483.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 444,556 - Xcc-8004.481.1 0.67 +0.8 444,556 - Xcc-8004.481.1 0.67 -0.5 444,575 + Xcc-8004.481.1 0.69 -1.7 444,576 - Xcc-8004.481.1 0.69 +0.9 444,576 - Xcc-8004.481.1 0.69 -0.1 444,576 - Xcc-8004.481.1 0.69 +0.1 444,707 + Xcc-8004.481.1 0.86 -0.6 444,707 + Xcc-8004.481.1 0.86 -0.6 444,729 - Xcc-8004.481.1 0.89 -0.4 445,134 + Xcc-8004.482.1 0.71 -0.1 445,134 + Xcc-8004.482.1 0.71 -1.9 445,134 + Xcc-8004.482.1 0.71 +0.6 445,134 + Xcc-8004.482.1 0.71 -1.2 445,154 + Xcc-8004.482.1 0.76 -2.0 445,155 - Xcc-8004.482.1 0.77 -2.7 445,155 - Xcc-8004.482.1 0.77 -0.8 445,300 - +0.9 445,497 + +0.2 445,686 + +1.1 445,687 - +0.9 445,742 + -0.1 445,742 + +0.6 445,742 + +0.3 445,742 + +1.4 445,742 + +1.8 445,743 - -0.6 445,743 - -0.4 445,743 - -0.3 445,743 - -0.7 445,743 - -0.5 445,743 - -0.4 445,743 - -1.0 445,776 + +0.8 445,776 + -0.4 445,776 + -0.3 445,776 + -0.6 445,777 - -2.7 445,777 - -0.3 446,017 + Xcc-8004.483.1 0.30 +0.5 446,017 + Xcc-8004.483.1 0.30 +0.2 446,017 + Xcc-8004.483.1 0.30 +0.6 446,018 - Xcc-8004.483.1 0.31 +1.1 446,164 + Xcc-8004.483.1 0.46 -0.3 446,165 - Xcc-8004.483.1 0.46 +0.3 446,236 + Xcc-8004.483.1 0.54 -0.2 446,237 - Xcc-8004.483.1 0.54 -0.1 446,237 - Xcc-8004.483.1 0.54 +1.1 446,237 - Xcc-8004.483.1 0.54 +1.6 446,237 - Xcc-8004.483.1 0.54 -0.6
Or see this region's nucleotide sequence