Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4265.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4263.1 and Xcc-8004.4264.1 are separated by 1 nucleotidesXcc-8004.4264.1 and Xcc-8004.4265.1 are separated by 41 nucleotidesXcc-8004.4265.1 and Xcc-8004.4266.1 are separated by 130 nucleotides Xcc-8004.4263.1: Xcc-8004.4263.1 - Optional hypothetical component of the B12 transporter BtuM, at 4,083,391 to 4,083,969 Xcc-8004.4263.1 Xcc-8004.4264.1: Xcc-8004.4264.1 - ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 4,083,971 to 4,084,528 Xcc-8004.4264.1 Xcc-8004.4265.1: Xcc-8004.4265.1 - acetoin utilization family protein, at 4,084,570 to 4,085,475 Xcc-8004.4265.1 Xcc-8004.4266.1: Xcc-8004.4266.1 - Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor, at 4,085,606 to 4,088,035 Xcc-8004.4266.1 Position (kb) 4084 4085 4086Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4083.622 kb on + strand, within Xcc-8004.4263.1at 4083.622 kb on + strand, within Xcc-8004.4263.1at 4083.622 kb on + strand, within Xcc-8004.4263.1at 4083.622 kb on + strand, within Xcc-8004.4263.1at 4083.622 kb on + strand, within Xcc-8004.4263.1at 4083.622 kb on + strand, within Xcc-8004.4263.1at 4083.622 kb on + strand, within Xcc-8004.4263.1at 4083.622 kb on + strand, within Xcc-8004.4263.1at 4083.623 kb on - strand, within Xcc-8004.4263.1at 4083.623 kb on - strand, within Xcc-8004.4263.1at 4083.623 kb on - strand, within Xcc-8004.4263.1at 4083.623 kb on - strand, within Xcc-8004.4263.1at 4083.623 kb on - strand, within Xcc-8004.4263.1at 4083.640 kb on + strand, within Xcc-8004.4263.1at 4083.641 kb on - strand, within Xcc-8004.4263.1at 4083.661 kb on + strand, within Xcc-8004.4263.1at 4083.661 kb on + strand, within Xcc-8004.4263.1at 4083.662 kb on - strand, within Xcc-8004.4263.1at 4083.662 kb on - strand, within Xcc-8004.4263.1at 4083.704 kb on - strand, within Xcc-8004.4263.1at 4083.704 kb on - strand, within Xcc-8004.4263.1at 4083.796 kb on + strand, within Xcc-8004.4263.1at 4083.796 kb on + strand, within Xcc-8004.4263.1at 4083.797 kb on - strand, within Xcc-8004.4263.1at 4083.797 kb on - strand, within Xcc-8004.4263.1at 4083.797 kb on - strand, within Xcc-8004.4263.1at 4083.797 kb on - strand, within Xcc-8004.4263.1at 4083.797 kb on - strand, within Xcc-8004.4263.1at 4083.797 kb on - strand, within Xcc-8004.4263.1at 4083.850 kb on + strand, within Xcc-8004.4263.1at 4083.850 kb on + strand, within Xcc-8004.4263.1at 4083.851 kb on - strand, within Xcc-8004.4263.1at 4083.871 kb on + strand, within Xcc-8004.4263.1at 4083.871 kb on + strand, within Xcc-8004.4263.1at 4083.871 kb on + strand, within Xcc-8004.4263.1at 4083.871 kb on + strand, within Xcc-8004.4263.1at 4083.872 kb on - strand, within Xcc-8004.4263.1at 4083.892 kb on + strand, within Xcc-8004.4263.1at 4083.892 kb on + strand, within Xcc-8004.4263.1at 4083.892 kb on + strand, within Xcc-8004.4263.1at 4083.892 kb on + strand, within Xcc-8004.4263.1at 4083.892 kb on + strand, within Xcc-8004.4263.1at 4083.892 kb on + strand, within Xcc-8004.4263.1at 4083.892 kb on + strand, within Xcc-8004.4263.1at 4083.893 kb on - strand, within Xcc-8004.4263.1at 4083.893 kb on - strand, within Xcc-8004.4263.1at 4083.893 kb on - strand, within Xcc-8004.4263.1at 4083.893 kb on - strand, within Xcc-8004.4263.1at 4083.995 kb on + strandat 4083.995 kb on + strandat 4083.995 kb on + strandat 4083.995 kb on + strandat 4083.995 kb on + strandat 4083.995 kb on + strandat 4083.995 kb on + strandat 4083.995 kb on + strandat 4083.995 kb on + strandat 4083.995 kb on + strandat 4083.995 kb on + strandat 4083.995 kb on + strandat 4083.996 kb on - strandat 4083.996 kb on - strandat 4083.996 kb on - strandat 4083.996 kb on - strandat 4083.996 kb on - strandat 4083.996 kb on - strandat 4083.996 kb on - strandat 4083.996 kb on - strandat 4083.996 kb on - strandat 4083.996 kb on - strandat 4083.996 kb on - strandat 4083.997 kb on + strandat 4083.997 kb on + strandat 4083.997 kb on + strandat 4083.997 kb on + strandat 4083.998 kb on - strandat 4083.998 kb on - strandat 4083.998 kb on - strandat 4083.998 kb on - strandat 4084.021 kb on + strandat 4084.039 kb on + strand, within Xcc-8004.4264.1at 4084.040 kb on - strand, within Xcc-8004.4264.1at 4084.040 kb on - strand, within Xcc-8004.4264.1at 4084.076 kb on + strand, within Xcc-8004.4264.1at 4084.555 kb on + strandat 4084.555 kb on + strandat 4084.555 kb on + strandat 4084.555 kb on + strandat 4084.555 kb on + strandat 4084.555 kb on + strandat 4084.555 kb on + strandat 4084.555 kb on + strandat 4084.555 kb on + strandat 4084.556 kb on - strandat 4084.556 kb on - strandat 4084.556 kb on - strandat 4084.556 kb on - strandat 4084.556 kb on - strandat 4084.556 kb on - strandat 4084.781 kb on - strand, within Xcc-8004.4265.1at 4084.800 kb on + strand, within Xcc-8004.4265.1at 4084.800 kb on + strand, within Xcc-8004.4265.1at 4084.801 kb on - strand, within Xcc-8004.4265.1at 4084.801 kb on - strand, within Xcc-8004.4265.1at 4085.022 kb on + strand, within Xcc-8004.4265.1at 4085.022 kb on + strand, within Xcc-8004.4265.1at 4085.022 kb on + strand, within Xcc-8004.4265.1at 4085.023 kb on - strand, within Xcc-8004.4265.1at 4085.023 kb on - strand, within Xcc-8004.4265.1at 4085.023 kb on - strand, within Xcc-8004.4265.1at 4085.023 kb on - strand, within Xcc-8004.4265.1at 4085.095 kb on + strand, within Xcc-8004.4265.1at 4085.095 kb on + strand, within Xcc-8004.4265.1at 4085.095 kb on + strand, within Xcc-8004.4265.1at 4085.096 kb on - strand, within Xcc-8004.4265.1at 4085.096 kb on - strand, within Xcc-8004.4265.1at 4085.096 kb on - strand, within Xcc-8004.4265.1at 4085.122 kb on + strand, within Xcc-8004.4265.1at 4085.399 kb on + strandat 4085.399 kb on + strandat 4085.420 kb on - strandat 4085.554 kb on + strandat 4085.554 kb on + strandat 4085.554 kb on + strandat 4085.554 kb on + strandat 4085.554 kb on + strandat 4085.563 kb on + strandat 4085.563 kb on + strandat 4085.564 kb on - strandat 4085.564 kb on - strandat 4085.565 kb on + strandat 4085.565 kb on + strandat 4085.575 kb on + strandat 4085.575 kb on + strandat 4085.575 kb on + strandat 4085.587 kb on + strandat 4085.587 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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4,083,622 + Xcc-8004.4263.1 0.40 -0.5
4,083,622 + Xcc-8004.4263.1 0.40 -0.1
4,083,622 + Xcc-8004.4263.1 0.40 -0.3
4,083,622 + Xcc-8004.4263.1 0.40 -0.2
4,083,622 + Xcc-8004.4263.1 0.40 +0.5
4,083,622 + Xcc-8004.4263.1 0.40 -1.2
4,083,622 + Xcc-8004.4263.1 0.40 +1.3
4,083,622 + Xcc-8004.4263.1 0.40 -0.2
4,083,623 - Xcc-8004.4263.1 0.40 +0.1
4,083,623 - Xcc-8004.4263.1 0.40 -1.1
4,083,623 - Xcc-8004.4263.1 0.40 -0.1
4,083,623 - Xcc-8004.4263.1 0.40 -2.4
4,083,623 - Xcc-8004.4263.1 0.40 -0.2
4,083,640 + Xcc-8004.4263.1 0.43 +0.2
4,083,641 - Xcc-8004.4263.1 0.43 -1.2
4,083,661 + Xcc-8004.4263.1 0.47 -3.1
4,083,661 + Xcc-8004.4263.1 0.47 -1.0
4,083,662 - Xcc-8004.4263.1 0.47 +0.3
4,083,662 - Xcc-8004.4263.1 0.47 -0.8
4,083,704 - Xcc-8004.4263.1 0.54 +1.1
4,083,704 - Xcc-8004.4263.1 0.54 +1.1
4,083,796 + Xcc-8004.4263.1 0.70 -0.9
4,083,796 + Xcc-8004.4263.1 0.70 +0.8
4,083,797 - Xcc-8004.4263.1 0.70 -0.5
4,083,797 - Xcc-8004.4263.1 0.70 +0.3
4,083,797 - Xcc-8004.4263.1 0.70 +1.5
4,083,797 - Xcc-8004.4263.1 0.70 +0.1
4,083,797 - Xcc-8004.4263.1 0.70 +0.8
4,083,797 - Xcc-8004.4263.1 0.70 +1.4
4,083,850 + Xcc-8004.4263.1 0.79 +0.5
4,083,850 + Xcc-8004.4263.1 0.79 +0.1
4,083,851 - Xcc-8004.4263.1 0.79 -0.2
4,083,871 + Xcc-8004.4263.1 0.83 -0.6
4,083,871 + Xcc-8004.4263.1 0.83 -0.1
4,083,871 + Xcc-8004.4263.1 0.83 -0.1
4,083,871 + Xcc-8004.4263.1 0.83 +0.7
4,083,872 - Xcc-8004.4263.1 0.83 -0.4
4,083,892 + Xcc-8004.4263.1 0.87 +0.4
4,083,892 + Xcc-8004.4263.1 0.87 -0.2
4,083,892 + Xcc-8004.4263.1 0.87 +1.0
4,083,892 + Xcc-8004.4263.1 0.87 +1.3
4,083,892 + Xcc-8004.4263.1 0.87 -0.7
4,083,892 + Xcc-8004.4263.1 0.87 -0.2
4,083,892 + Xcc-8004.4263.1 0.87 -1.3
4,083,893 - Xcc-8004.4263.1 0.87 +0.0
4,083,893 - Xcc-8004.4263.1 0.87 +0.1
4,083,893 - Xcc-8004.4263.1 0.87 -0.5
4,083,893 - Xcc-8004.4263.1 0.87 -1.6
4,083,995 + -0.2
4,083,995 + -0.2
4,083,995 + +0.3
4,083,995 + +1.4
4,083,995 + -0.8
4,083,995 + -1.4
4,083,995 + +1.5
4,083,995 + -0.2
4,083,995 + +0.2
4,083,995 + -0.3
4,083,995 + -0.3
4,083,995 + +0.4
4,083,996 - +1.3
4,083,996 - +0.1
4,083,996 - -0.8
4,083,996 - +1.4
4,083,996 - +0.0
4,083,996 - -0.9
4,083,996 - +0.2
4,083,996 - -0.3
4,083,996 - -0.4
4,083,996 - +2.0
4,083,996 - -1.1
4,083,997 + -2.5
4,083,997 + -0.6
4,083,997 + -1.7
4,083,997 + -0.2
4,083,998 - -2.1
4,083,998 - -2.2
4,083,998 - -0.5
4,083,998 - +0.4
4,084,021 + -0.7
4,084,039 + Xcc-8004.4264.1 0.12 +0.7
4,084,040 - Xcc-8004.4264.1 0.12 -0.9
4,084,040 - Xcc-8004.4264.1 0.12 +3.1
4,084,076 + Xcc-8004.4264.1 0.19 -0.1
4,084,555 + -0.9
4,084,555 + +1.9
4,084,555 + -2.3
4,084,555 + +0.2
4,084,555 + -0.1
4,084,555 + -2.2
4,084,555 + -2.0
4,084,555 + -0.4
4,084,555 + -1.1
4,084,556 - +1.2
4,084,556 - +0.0
4,084,556 - +1.1
4,084,556 - +0.2
4,084,556 - -2.9
4,084,556 - +0.8
4,084,781 - Xcc-8004.4265.1 0.23 +0.3
4,084,800 + Xcc-8004.4265.1 0.25 +0.0
4,084,800 + Xcc-8004.4265.1 0.25 +0.9
4,084,801 - Xcc-8004.4265.1 0.25 -0.3
4,084,801 - Xcc-8004.4265.1 0.25 -1.5
4,085,022 + Xcc-8004.4265.1 0.50 +0.8
4,085,022 + Xcc-8004.4265.1 0.50 +2.3
4,085,022 + Xcc-8004.4265.1 0.50 +0.9
4,085,023 - Xcc-8004.4265.1 0.50 -0.4
4,085,023 - Xcc-8004.4265.1 0.50 +0.7
4,085,023 - Xcc-8004.4265.1 0.50 -0.9
4,085,023 - Xcc-8004.4265.1 0.50 +0.5
4,085,095 + Xcc-8004.4265.1 0.58 +0.7
4,085,095 + Xcc-8004.4265.1 0.58 +0.1
4,085,095 + Xcc-8004.4265.1 0.58 +0.4
4,085,096 - Xcc-8004.4265.1 0.58 +0.6
4,085,096 - Xcc-8004.4265.1 0.58 +0.7
4,085,096 - Xcc-8004.4265.1 0.58 -0.1
4,085,122 + Xcc-8004.4265.1 0.61 +0.4
4,085,399 + +0.6
4,085,399 + -0.1
4,085,420 - -0.8
4,085,554 + +2.1
4,085,554 + +0.3
4,085,554 + -1.6
4,085,554 + +1.0
4,085,554 + +0.2
4,085,563 + -0.2
4,085,563 + +2.5
4,085,564 - +0.0
4,085,564 - -0.8
4,085,565 + -0.8
4,085,565 + +1.1
4,085,575 + +0.8
4,085,575 + -0.2
4,085,575 + +0.2
4,085,587 + -0.6
4,085,587 + -0.5

Or see this region's nucleotide sequence