Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3980.1 and Xcc-8004.3981.1 are separated by 75 nucleotides Xcc-8004.3981.1 and Xcc-8004.3982.1 are separated by 97 nucleotides
Xcc-8004.3980.1: Xcc-8004.3980.1 - 2-methylcitrate synthase (EC 2.3.3.5), at 3,859,455 to 3,860,609
Xcc-8004.3980.1
Xcc-8004.3981.1: Xcc-8004.3981.1 - Methylisocitrate lyase (EC 4.1.3.30), at 3,860,685 to 3,861,581
Xcc-8004.3981.1
Xcc-8004.3982.1: Xcc-8004.3982.1 - Propionate catabolism operon regulatory protein PrpR, at 3,861,679 to 3,863,328
Xcc-8004.3982.1
Position (kb) 3860
3861
3862 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3859.714 kb on + strand, within Xcc-8004.3980.1 at 3859.714 kb on + strand, within Xcc-8004.3980.1 at 3859.714 kb on + strand, within Xcc-8004.3980.1 at 3859.715 kb on - strand, within Xcc-8004.3980.1 at 3859.715 kb on - strand, within Xcc-8004.3980.1 at 3859.715 kb on - strand, within Xcc-8004.3980.1 at 3859.795 kb on + strand, within Xcc-8004.3980.1 at 3859.880 kb on - strand, within Xcc-8004.3980.1 at 3859.966 kb on + strand, within Xcc-8004.3980.1 at 3859.966 kb on + strand, within Xcc-8004.3980.1 at 3859.966 kb on + strand, within Xcc-8004.3980.1 at 3859.967 kb on - strand, within Xcc-8004.3980.1 at 3859.967 kb on - strand, within Xcc-8004.3980.1 at 3859.967 kb on - strand, within Xcc-8004.3980.1 at 3860.167 kb on + strand, within Xcc-8004.3980.1 at 3860.167 kb on + strand, within Xcc-8004.3980.1 at 3860.173 kb on + strand, within Xcc-8004.3980.1 at 3860.174 kb on - strand, within Xcc-8004.3980.1 at 3860.179 kb on + strand, within Xcc-8004.3980.1 at 3860.180 kb on - strand, within Xcc-8004.3980.1 at 3860.180 kb on - strand, within Xcc-8004.3980.1 at 3860.485 kb on + strand, within Xcc-8004.3980.1 at 3860.495 kb on - strand at 3860.537 kb on + strand at 3860.538 kb on - strand at 3860.649 kb on - strand at 3860.729 kb on - strand at 3860.729 kb on - strand at 3860.729 kb on - strand at 3860.737 kb on + strand at 3860.752 kb on + strand at 3860.753 kb on - strand at 3860.753 kb on - strand at 3860.821 kb on + strand, within Xcc-8004.3981.1 at 3860.821 kb on + strand, within Xcc-8004.3981.1 at 3860.986 kb on + strand, within Xcc-8004.3981.1 at 3860.986 kb on + strand, within Xcc-8004.3981.1 at 3860.987 kb on - strand, within Xcc-8004.3981.1 at 3860.987 kb on - strand, within Xcc-8004.3981.1 at 3861.001 kb on + strand, within Xcc-8004.3981.1 at 3861.002 kb on - strand, within Xcc-8004.3981.1 at 3861.020 kb on + strand, within Xcc-8004.3981.1 at 3861.284 kb on + strand, within Xcc-8004.3981.1 at 3861.445 kb on + strand, within Xcc-8004.3981.1 at 3861.445 kb on + strand, within Xcc-8004.3981.1 at 3861.445 kb on + strand, within Xcc-8004.3981.1 at 3861.446 kb on - strand, within Xcc-8004.3981.1 at 3861.446 kb on - strand, within Xcc-8004.3981.1 at 3861.446 kb on - strand, within Xcc-8004.3981.1 at 3861.446 kb on - strand, within Xcc-8004.3981.1 at 3861.446 kb on - strand, within Xcc-8004.3981.1 at 3861.446 kb on - strand, within Xcc-8004.3981.1 at 3861.446 kb on - strand, within Xcc-8004.3981.1 at 3861.634 kb on - strand at 3861.956 kb on - strand, within Xcc-8004.3982.1 at 3861.956 kb on - strand, within Xcc-8004.3982.1 at 3862.265 kb on - strand, within Xcc-8004.3982.1 at 3862.343 kb on + strand, within Xcc-8004.3982.1 at 3862.436 kb on - strand, within Xcc-8004.3982.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 3,859,714 + Xcc-8004.3980.1 0.22 -1.3 3,859,714 + Xcc-8004.3980.1 0.22 +0.8 3,859,714 + Xcc-8004.3980.1 0.22 +0.4 3,859,715 - Xcc-8004.3980.1 0.23 -0.9 3,859,715 - Xcc-8004.3980.1 0.23 +0.8 3,859,715 - Xcc-8004.3980.1 0.23 +2.0 3,859,795 + Xcc-8004.3980.1 0.29 -0.4 3,859,880 - Xcc-8004.3980.1 0.37 -0.6 3,859,966 + Xcc-8004.3980.1 0.44 +1.1 3,859,966 + Xcc-8004.3980.1 0.44 -0.1 3,859,966 + Xcc-8004.3980.1 0.44 +0.2 3,859,967 - Xcc-8004.3980.1 0.44 -0.4 3,859,967 - Xcc-8004.3980.1 0.44 +2.9 3,859,967 - Xcc-8004.3980.1 0.44 +1.0 3,860,167 + Xcc-8004.3980.1 0.62 +1.2 3,860,167 + Xcc-8004.3980.1 0.62 -0.0 3,860,173 + Xcc-8004.3980.1 0.62 +0.8 3,860,174 - Xcc-8004.3980.1 0.62 +2.0 3,860,179 + Xcc-8004.3980.1 0.63 +1.2 3,860,180 - Xcc-8004.3980.1 0.63 +0.6 3,860,180 - Xcc-8004.3980.1 0.63 +2.0 3,860,485 + Xcc-8004.3980.1 0.89 -0.2 3,860,495 - -0.9 3,860,537 + +1.0 3,860,538 - +2.0 3,860,649 - +0.4 3,860,729 - -1.6 3,860,729 - -0.4 3,860,729 - -1.7 3,860,737 + -0.8 3,860,752 + +1.0 3,860,753 - -2.0 3,860,753 - -0.5 3,860,821 + Xcc-8004.3981.1 0.15 -1.6 3,860,821 + Xcc-8004.3981.1 0.15 +1.0 3,860,986 + Xcc-8004.3981.1 0.34 +1.1 3,860,986 + Xcc-8004.3981.1 0.34 +0.4 3,860,987 - Xcc-8004.3981.1 0.34 -1.9 3,860,987 - Xcc-8004.3981.1 0.34 -2.2 3,861,001 + Xcc-8004.3981.1 0.35 -0.5 3,861,002 - Xcc-8004.3981.1 0.35 -0.3 3,861,020 + Xcc-8004.3981.1 0.37 +0.8 3,861,284 + Xcc-8004.3981.1 0.67 -1.3 3,861,445 + Xcc-8004.3981.1 0.85 +0.5 3,861,445 + Xcc-8004.3981.1 0.85 +1.3 3,861,445 + Xcc-8004.3981.1 0.85 -1.5 3,861,446 - Xcc-8004.3981.1 0.85 +0.2 3,861,446 - Xcc-8004.3981.1 0.85 -1.1 3,861,446 - Xcc-8004.3981.1 0.85 +0.2 3,861,446 - Xcc-8004.3981.1 0.85 -2.1 3,861,446 - Xcc-8004.3981.1 0.85 +0.4 3,861,446 - Xcc-8004.3981.1 0.85 -1.4 3,861,446 - Xcc-8004.3981.1 0.85 -2.2 3,861,634 - +0.3 3,861,956 - Xcc-8004.3982.1 0.17 +0.2 3,861,956 - Xcc-8004.3982.1 0.17 +1.8 3,862,265 - Xcc-8004.3982.1 0.36 -1.1 3,862,343 + Xcc-8004.3982.1 0.40 +0.3 3,862,436 - Xcc-8004.3982.1 0.46 -1.8
Or see this region's nucleotide sequence