Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3717.1 and Xcc-8004.3718.1 are separated by 341 nucleotides Xcc-8004.3718.1 and Xcc-8004.3720.1 are separated by 78 nucleotides Xcc-8004.3720.1 and Xcc-8004.3721.1 are separated by 176 nucleotides
Xcc-8004.3717.1: Xcc-8004.3717.1 - Hpa2 protein, at 3,596,348 to 3,596,920
Xcc-8004.3717.1
Xcc-8004.3718.1: Xcc-8004.3718.1 - Hpa1 protein, at 3,597,262 to 3,597,663
Xcc-8004.3718.1
Xcc-8004.3720.1: Xcc-8004.3720.1 - Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG), at 3,597,742 to 3,599,559
Xcc-8004.3720.1
Xcc-8004.3721.1: Xcc-8004.3721.1 - Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components), at 3,599,736 to 3,600,566
Xcc-8004.3721.1
Position (kb) 3597
3598
3599
3600 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 3597.061 kb on + strand at 3597.192 kb on - strand at 3597.192 kb on - strand at 3597.711 kb on + strand at 3597.711 kb on + strand at 3598.066 kb on + strand, within Xcc-8004.3720.1 at 3598.073 kb on - strand, within Xcc-8004.3720.1 at 3598.091 kb on + strand, within Xcc-8004.3720.1 at 3598.092 kb on - strand, within Xcc-8004.3720.1 at 3598.677 kb on + strand, within Xcc-8004.3720.1 at 3598.678 kb on - strand, within Xcc-8004.3720.1 at 3598.807 kb on - strand, within Xcc-8004.3720.1 at 3598.807 kb on - strand, within Xcc-8004.3720.1 at 3598.895 kb on + strand, within Xcc-8004.3720.1 at 3598.895 kb on + strand, within Xcc-8004.3720.1 at 3598.895 kb on + strand, within Xcc-8004.3720.1 at 3598.896 kb on - strand, within Xcc-8004.3720.1 at 3598.896 kb on - strand, within Xcc-8004.3720.1 at 3598.898 kb on - strand, within Xcc-8004.3720.1 at 3598.898 kb on - strand, within Xcc-8004.3720.1 at 3598.898 kb on - strand, within Xcc-8004.3720.1 at 3598.898 kb on - strand, within Xcc-8004.3720.1 at 3598.980 kb on - strand, within Xcc-8004.3720.1 at 3598.980 kb on - strand, within Xcc-8004.3720.1 at 3599.069 kb on + strand, within Xcc-8004.3720.1 at 3599.553 kb on - strand at 3600.279 kb on - strand, within Xcc-8004.3721.1 at 3600.406 kb on + strand, within Xcc-8004.3721.1 at 3600.407 kb on - strand, within Xcc-8004.3721.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 3,597,061 + +1.0 3,597,192 - -0.6 3,597,192 - -0.3 3,597,711 + -1.2 3,597,711 + +0.0 3,598,066 + Xcc-8004.3720.1 0.18 -0.6 3,598,073 - Xcc-8004.3720.1 0.18 -1.9 3,598,091 + Xcc-8004.3720.1 0.19 -1.8 3,598,092 - Xcc-8004.3720.1 0.19 -1.5 3,598,677 + Xcc-8004.3720.1 0.51 -0.6 3,598,678 - Xcc-8004.3720.1 0.51 -2.3 3,598,807 - Xcc-8004.3720.1 0.59 +0.4 3,598,807 - Xcc-8004.3720.1 0.59 +0.3 3,598,895 + Xcc-8004.3720.1 0.63 -1.7 3,598,895 + Xcc-8004.3720.1 0.63 -0.8 3,598,895 + Xcc-8004.3720.1 0.63 -0.1 3,598,896 - Xcc-8004.3720.1 0.63 -0.2 3,598,896 - Xcc-8004.3720.1 0.63 -2.2 3,598,898 - Xcc-8004.3720.1 0.64 +0.5 3,598,898 - Xcc-8004.3720.1 0.64 -0.9 3,598,898 - Xcc-8004.3720.1 0.64 +1.1 3,598,898 - Xcc-8004.3720.1 0.64 -2.0 3,598,980 - Xcc-8004.3720.1 0.68 +0.2 3,598,980 - Xcc-8004.3720.1 0.68 +1.1 3,599,069 + Xcc-8004.3720.1 0.73 +3.9 3,599,553 - +2.3 3,600,279 - Xcc-8004.3721.1 0.65 -1.5 3,600,406 + Xcc-8004.3721.1 0.81 -0.9 3,600,407 - Xcc-8004.3721.1 0.81 -1.6
Or see this region's nucleotide sequence