Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3639.1 and Xcc-8004.3640.1 are separated by 13 nucleotides Xcc-8004.3640.1 and Xcc-8004.3641.1 are separated by 129 nucleotides Xcc-8004.3641.1 and Xcc-8004.3642.1 are separated by 163 nucleotides Xcc-8004.3642.1 and Xcc-8004.3643.1 are separated by 226 nucleotides Xcc-8004.3643.1 and Xcc-8004.3644.1 are separated by 140 nucleotides
Xcc-8004.3639.1: Xcc-8004.3639.1 - Small-conductance mechanosensitive channel, at 3,520,541 to 3,521,107
Xcc-8004.3639.1
Xcc-8004.3640.1: Xcc-8004.3640.1 - Hypothetical Zinc-finger containing protein, at 3,521,121 to 3,521,387
Xcc-8004.3640.1
Xcc-8004.3641.1: Xcc-8004.3641.1 - FIG01210445: hypothetical protein, at 3,521,517 to 3,521,780
Xcc-8004.3641.1
Xcc-8004.3642.1: Xcc-8004.3642.1 - FIG01211227: hypothetical protein, at 3,521,944 to 3,522,117
Xcc-8004.3642.1
Xcc-8004.3643.1: Xcc-8004.3643.1 - COG1451: Predicted metal-dependent hydrolase, at 3,522,344 to 3,522,844
Xcc-8004.3643.1
Xcc-8004.3644.1: Xcc-8004.3644.1 - Similar to eukaryotic Peptidyl prolyl 4-hydroxylase, alpha subunit (EC 1.14.11.2), at 3,522,985 to 3,523,119
Xcc-8004.3644.1
Position (kb) 3521
3522
3523 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3520.988 kb on + strand, within Xcc-8004.3639.1 at 3520.988 kb on + strand, within Xcc-8004.3639.1 at 3520.988 kb on + strand, within Xcc-8004.3639.1 at 3520.988 kb on + strand, within Xcc-8004.3639.1 at 3520.989 kb on - strand, within Xcc-8004.3639.1 at 3520.989 kb on - strand, within Xcc-8004.3639.1 at 3520.989 kb on - strand, within Xcc-8004.3639.1 at 3520.989 kb on - strand, within Xcc-8004.3639.1 at 3520.989 kb on - strand, within Xcc-8004.3639.1 at 3520.989 kb on - strand, within Xcc-8004.3639.1 at 3521.159 kb on - strand, within Xcc-8004.3640.1 at 3521.159 kb on - strand, within Xcc-8004.3640.1 at 3521.159 kb on - strand, within Xcc-8004.3640.1 at 3521.159 kb on - strand, within Xcc-8004.3640.1 at 3521.211 kb on + strand, within Xcc-8004.3640.1 at 3521.211 kb on + strand, within Xcc-8004.3640.1 at 3521.211 kb on + strand, within Xcc-8004.3640.1 at 3521.211 kb on + strand, within Xcc-8004.3640.1 at 3521.211 kb on + strand, within Xcc-8004.3640.1 at 3521.211 kb on + strand, within Xcc-8004.3640.1 at 3521.211 kb on + strand, within Xcc-8004.3640.1 at 3521.211 kb on + strand, within Xcc-8004.3640.1 at 3521.212 kb on - strand, within Xcc-8004.3640.1 at 3521.212 kb on - strand, within Xcc-8004.3640.1 at 3521.212 kb on - strand, within Xcc-8004.3640.1 at 3521.212 kb on - strand, within Xcc-8004.3640.1 at 3521.212 kb on - strand, within Xcc-8004.3640.1 at 3521.212 kb on - strand, within Xcc-8004.3640.1 at 3521.212 kb on - strand, within Xcc-8004.3640.1 at 3521.212 kb on - strand, within Xcc-8004.3640.1 at 3521.212 kb on - strand, within Xcc-8004.3640.1 at 3521.212 kb on - strand, within Xcc-8004.3640.1 at 3521.212 kb on - strand, within Xcc-8004.3640.1 at 3521.212 kb on - strand, within Xcc-8004.3640.1 at 3521.212 kb on - strand, within Xcc-8004.3640.1 at 3521.212 kb on - strand, within Xcc-8004.3640.1 at 3521.212 kb on - strand, within Xcc-8004.3640.1 at 3521.212 kb on - strand, within Xcc-8004.3640.1 at 3521.252 kb on + strand, within Xcc-8004.3640.1 at 3521.252 kb on + strand, within Xcc-8004.3640.1 at 3521.253 kb on - strand, within Xcc-8004.3640.1 at 3521.253 kb on - strand, within Xcc-8004.3640.1 at 3521.253 kb on - strand, within Xcc-8004.3640.1 at 3521.253 kb on - strand, within Xcc-8004.3640.1 at 3521.253 kb on - strand, within Xcc-8004.3640.1 at 3521.480 kb on + strand at 3521.480 kb on + strand at 3521.480 kb on + strand at 3521.481 kb on - strand at 3521.481 kb on - strand at 3521.481 kb on - strand at 3521.481 kb on - strand at 3521.732 kb on + strand, within Xcc-8004.3641.1 at 3521.784 kb on - strand at 3521.784 kb on - strand at 3521.784 kb on - strand at 3521.784 kb on - strand at 3521.784 kb on - strand at 3521.784 kb on - strand at 3521.891 kb on + strand at 3521.891 kb on + strand at 3521.891 kb on + strand at 3521.891 kb on + strand at 3521.892 kb on - strand at 3521.892 kb on - strand at 3521.892 kb on - strand at 3521.892 kb on - strand at 3521.897 kb on + strand at 3521.898 kb on - strand at 3521.898 kb on - strand at 3521.907 kb on + strand at 3521.907 kb on + strand at 3521.908 kb on - strand at 3522.099 kb on + strand, within Xcc-8004.3642.1 at 3522.100 kb on - strand at 3522.100 kb on - strand at 3522.225 kb on + strand at 3522.226 kb on - strand at 3522.262 kb on + strand at 3522.262 kb on + strand at 3522.263 kb on - strand at 3522.263 kb on - strand at 3522.359 kb on + strand at 3522.360 kb on - strand at 3522.360 kb on - strand at 3522.360 kb on - strand at 3522.485 kb on + strand, within Xcc-8004.3643.1 at 3522.485 kb on + strand, within Xcc-8004.3643.1 at 3522.485 kb on + strand, within Xcc-8004.3643.1 at 3522.485 kb on + strand, within Xcc-8004.3643.1 at 3522.485 kb on + strand, within Xcc-8004.3643.1 at 3522.485 kb on + strand, within Xcc-8004.3643.1 at 3522.486 kb on - strand, within Xcc-8004.3643.1 at 3522.486 kb on - strand, within Xcc-8004.3643.1 at 3522.486 kb on - strand, within Xcc-8004.3643.1 at 3522.486 kb on - strand, within Xcc-8004.3643.1 at 3522.491 kb on + strand, within Xcc-8004.3643.1 at 3522.491 kb on + strand, within Xcc-8004.3643.1 at 3522.492 kb on - strand, within Xcc-8004.3643.1 at 3522.492 kb on - strand, within Xcc-8004.3643.1 at 3522.492 kb on - strand, within Xcc-8004.3643.1 at 3522.501 kb on - strand, within Xcc-8004.3643.1 at 3522.515 kb on + strand, within Xcc-8004.3643.1 at 3522.515 kb on + strand, within Xcc-8004.3643.1 at 3522.515 kb on + strand, within Xcc-8004.3643.1 at 3522.515 kb on + strand, within Xcc-8004.3643.1 at 3522.515 kb on + strand, within Xcc-8004.3643.1 at 3522.516 kb on - strand, within Xcc-8004.3643.1 at 3522.516 kb on - strand, within Xcc-8004.3643.1 at 3522.516 kb on - strand, within Xcc-8004.3643.1 at 3522.516 kb on - strand, within Xcc-8004.3643.1 at 3522.516 kb on - strand, within Xcc-8004.3643.1 at 3522.551 kb on + strand, within Xcc-8004.3643.1 at 3522.551 kb on + strand, within Xcc-8004.3643.1 at 3522.551 kb on + strand, within Xcc-8004.3643.1 at 3522.552 kb on - strand, within Xcc-8004.3643.1 at 3522.552 kb on - strand, within Xcc-8004.3643.1 at 3522.552 kb on - strand, within Xcc-8004.3643.1 at 3522.552 kb on - strand, within Xcc-8004.3643.1 at 3522.749 kb on + strand, within Xcc-8004.3643.1 at 3522.749 kb on + strand, within Xcc-8004.3643.1 at 3522.749 kb on + strand, within Xcc-8004.3643.1 at 3522.749 kb on + strand, within Xcc-8004.3643.1 at 3522.749 kb on + strand, within Xcc-8004.3643.1 at 3522.749 kb on + strand, within Xcc-8004.3643.1 at 3522.750 kb on - strand, within Xcc-8004.3643.1 at 3522.750 kb on - strand, within Xcc-8004.3643.1 at 3522.779 kb on + strand, within Xcc-8004.3643.1 at 3522.780 kb on - strand, within Xcc-8004.3643.1 at 3522.809 kb on + strand at 3522.809 kb on + strand at 3522.810 kb on - strand at 3522.810 kb on - strand at 3522.810 kb on - strand at 3522.930 kb on + strand at 3522.930 kb on + strand at 3522.931 kb on - strand at 3522.931 kb on - strand at 3522.931 kb on - strand at 3522.938 kb on + strand at 3522.938 kb on + strand at 3522.939 kb on - strand at 3522.939 kb on - strand at 3522.939 kb on - strand at 3522.939 kb on - strand at 3522.968 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 3,520,988 + Xcc-8004.3639.1 0.79 +0.2 3,520,988 + Xcc-8004.3639.1 0.79 +1.2 3,520,988 + Xcc-8004.3639.1 0.79 +1.3 3,520,988 + Xcc-8004.3639.1 0.79 -0.6 3,520,989 - Xcc-8004.3639.1 0.79 -1.4 3,520,989 - Xcc-8004.3639.1 0.79 +0.9 3,520,989 - Xcc-8004.3639.1 0.79 -0.2 3,520,989 - Xcc-8004.3639.1 0.79 -0.3 3,520,989 - Xcc-8004.3639.1 0.79 -2.6 3,520,989 - Xcc-8004.3639.1 0.79 +0.1 3,521,159 - Xcc-8004.3640.1 0.14 -0.1 3,521,159 - Xcc-8004.3640.1 0.14 +1.2 3,521,159 - Xcc-8004.3640.1 0.14 -0.8 3,521,159 - Xcc-8004.3640.1 0.14 +1.2 3,521,211 + Xcc-8004.3640.1 0.34 -1.5 3,521,211 + Xcc-8004.3640.1 0.34 +0.8 3,521,211 + Xcc-8004.3640.1 0.34 +0.2 3,521,211 + Xcc-8004.3640.1 0.34 +0.7 3,521,211 + Xcc-8004.3640.1 0.34 -1.4 3,521,211 + Xcc-8004.3640.1 0.34 -2.6 3,521,211 + Xcc-8004.3640.1 0.34 -0.6 3,521,211 + Xcc-8004.3640.1 0.34 -1.7 3,521,212 - Xcc-8004.3640.1 0.34 -2.2 3,521,212 - Xcc-8004.3640.1 0.34 -0.9 3,521,212 - Xcc-8004.3640.1 0.34 +0.9 3,521,212 - Xcc-8004.3640.1 0.34 +0.7 3,521,212 - Xcc-8004.3640.1 0.34 +0.5 3,521,212 - Xcc-8004.3640.1 0.34 -0.4 3,521,212 - Xcc-8004.3640.1 0.34 -1.1 3,521,212 - Xcc-8004.3640.1 0.34 +1.0 3,521,212 - Xcc-8004.3640.1 0.34 +0.7 3,521,212 - Xcc-8004.3640.1 0.34 -0.1 3,521,212 - Xcc-8004.3640.1 0.34 -0.1 3,521,212 - Xcc-8004.3640.1 0.34 +0.7 3,521,212 - Xcc-8004.3640.1 0.34 -0.1 3,521,212 - Xcc-8004.3640.1 0.34 +0.2 3,521,212 - Xcc-8004.3640.1 0.34 -0.6 3,521,212 - Xcc-8004.3640.1 0.34 +0.1 3,521,252 + Xcc-8004.3640.1 0.49 +1.0 3,521,252 + Xcc-8004.3640.1 0.49 -0.2 3,521,253 - Xcc-8004.3640.1 0.49 +0.0 3,521,253 - Xcc-8004.3640.1 0.49 +0.0 3,521,253 - Xcc-8004.3640.1 0.49 +1.1 3,521,253 - Xcc-8004.3640.1 0.49 -0.2 3,521,253 - Xcc-8004.3640.1 0.49 -1.1 3,521,480 + +0.1 3,521,480 + -0.3 3,521,480 + +0.3 3,521,481 - +0.2 3,521,481 - -0.1 3,521,481 - +1.7 3,521,481 - +1.4 3,521,732 + Xcc-8004.3641.1 0.81 -2.6 3,521,784 - -2.3 3,521,784 - -0.1 3,521,784 - -0.2 3,521,784 - +1.6 3,521,784 - +0.2 3,521,784 - +1.0 3,521,891 + +0.8 3,521,891 + +0.4 3,521,891 + -2.4 3,521,891 + -1.4 3,521,892 - +0.2 3,521,892 - -0.4 3,521,892 - +1.8 3,521,892 - +1.1 3,521,897 + -1.2 3,521,898 - +0.3 3,521,898 - -0.6 3,521,907 + -0.6 3,521,907 + -0.6 3,521,908 - +0.9 3,522,099 + Xcc-8004.3642.1 0.89 +2.6 3,522,100 - +0.2 3,522,100 - +0.7 3,522,225 + +0.0 3,522,226 - -1.0 3,522,262 + -0.0 3,522,262 + +1.0 3,522,263 - -0.4 3,522,263 - +0.2 3,522,359 + +1.6 3,522,360 - +0.4 3,522,360 - -1.1 3,522,360 - +0.7 3,522,485 + Xcc-8004.3643.1 0.28 +0.7 3,522,485 + Xcc-8004.3643.1 0.28 +0.3 3,522,485 + Xcc-8004.3643.1 0.28 -1.3 3,522,485 + Xcc-8004.3643.1 0.28 -1.1 3,522,485 + Xcc-8004.3643.1 0.28 -1.5 3,522,485 + Xcc-8004.3643.1 0.28 +0.9 3,522,486 - Xcc-8004.3643.1 0.28 -1.0 3,522,486 - Xcc-8004.3643.1 0.28 -0.6 3,522,486 - Xcc-8004.3643.1 0.28 -0.1 3,522,486 - Xcc-8004.3643.1 0.28 +0.1 3,522,491 + Xcc-8004.3643.1 0.29 -1.0 3,522,491 + Xcc-8004.3643.1 0.29 -0.9 3,522,492 - Xcc-8004.3643.1 0.30 +0.1 3,522,492 - Xcc-8004.3643.1 0.30 -0.3 3,522,492 - Xcc-8004.3643.1 0.30 +1.2 3,522,501 - Xcc-8004.3643.1 0.31 -0.1 3,522,515 + Xcc-8004.3643.1 0.34 -0.5 3,522,515 + Xcc-8004.3643.1 0.34 +1.4 3,522,515 + Xcc-8004.3643.1 0.34 -0.5 3,522,515 + Xcc-8004.3643.1 0.34 +1.6 3,522,515 + Xcc-8004.3643.1 0.34 +0.1 3,522,516 - Xcc-8004.3643.1 0.34 +0.1 3,522,516 - Xcc-8004.3643.1 0.34 +3.0 3,522,516 - Xcc-8004.3643.1 0.34 +1.4 3,522,516 - Xcc-8004.3643.1 0.34 +0.4 3,522,516 - Xcc-8004.3643.1 0.34 -1.3 3,522,551 + Xcc-8004.3643.1 0.41 +0.3 3,522,551 + Xcc-8004.3643.1 0.41 +0.1 3,522,551 + Xcc-8004.3643.1 0.41 -2.4 3,522,552 - Xcc-8004.3643.1 0.42 +1.7 3,522,552 - Xcc-8004.3643.1 0.42 +1.1 3,522,552 - Xcc-8004.3643.1 0.42 -1.1 3,522,552 - Xcc-8004.3643.1 0.42 -0.0 3,522,749 + Xcc-8004.3643.1 0.81 +0.4 3,522,749 + Xcc-8004.3643.1 0.81 +0.9 3,522,749 + Xcc-8004.3643.1 0.81 -1.3 3,522,749 + Xcc-8004.3643.1 0.81 -1.6 3,522,749 + Xcc-8004.3643.1 0.81 +0.4 3,522,749 + Xcc-8004.3643.1 0.81 +0.9 3,522,750 - Xcc-8004.3643.1 0.81 -0.2 3,522,750 - Xcc-8004.3643.1 0.81 -0.4 3,522,779 + Xcc-8004.3643.1 0.87 +0.2 3,522,780 - Xcc-8004.3643.1 0.87 -1.0 3,522,809 + +0.8 3,522,809 + -0.7 3,522,810 - -1.3 3,522,810 - -0.0 3,522,810 - -1.1 3,522,930 + -1.0 3,522,930 + -0.4 3,522,931 - +0.1 3,522,931 - -0.3 3,522,931 - +2.1 3,522,938 + -0.3 3,522,938 + -1.1 3,522,939 - -0.5 3,522,939 - -0.1 3,522,939 - -1.0 3,522,939 - -0.2 3,522,968 + +3.7
Or see this region's nucleotide sequence