Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3612.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3610.1 and Xcc-8004.3612.1 are separated by 97 nucleotidesXcc-8004.3612.1 and Xcc-8004.3613.1 are separated by 11 nucleotidesXcc-8004.3613.1 and Xcc-8004.3614.1 are separated by 48 nucleotides Xcc-8004.3610.1: Xcc-8004.3610.1 - Cyclopropane-fatty-acyl-phospholipid synthase-like protein, clusters with FIG005069, at 3,498,053 to 3,499,123 Xcc-8004.3610.1 Xcc-8004.3612.1: Xcc-8004.3612.1 - Putative translation initiation inhibitor, yjgF family, at 3,499,221 to 3,499,568 Xcc-8004.3612.1 Xcc-8004.3613.1: Xcc-8004.3613.1 - FIG01211929: hypothetical protein, at 3,499,580 to 3,500,332 Xcc-8004.3613.1 Xcc-8004.3614.1: Xcc-8004.3614.1 - hypothetical protein, at 3,500,381 to 3,503,104 Xcc-8004.3614.1 Position (kb) 3499 3500Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3498.324 kb on + strand, within Xcc-8004.3610.1at 3498.324 kb on + strand, within Xcc-8004.3610.1at 3498.324 kb on + strand, within Xcc-8004.3610.1at 3498.324 kb on + strand, within Xcc-8004.3610.1at 3498.325 kb on - strand, within Xcc-8004.3610.1at 3498.347 kb on + strand, within Xcc-8004.3610.1at 3498.347 kb on + strand, within Xcc-8004.3610.1at 3498.347 kb on + strand, within Xcc-8004.3610.1at 3498.348 kb on - strand, within Xcc-8004.3610.1at 3498.348 kb on - strand, within Xcc-8004.3610.1at 3498.348 kb on - strand, within Xcc-8004.3610.1at 3498.348 kb on - strand, within Xcc-8004.3610.1at 3498.359 kb on + strand, within Xcc-8004.3610.1at 3498.416 kb on + strand, within Xcc-8004.3610.1at 3498.416 kb on + strand, within Xcc-8004.3610.1at 3498.417 kb on - strand, within Xcc-8004.3610.1at 3498.417 kb on - strand, within Xcc-8004.3610.1at 3498.693 kb on - strand, within Xcc-8004.3610.1at 3498.693 kb on - strand, within Xcc-8004.3610.1at 3498.754 kb on + strand, within Xcc-8004.3610.1at 3498.755 kb on - strand, within Xcc-8004.3610.1at 3498.755 kb on - strand, within Xcc-8004.3610.1at 3498.755 kb on - strand, within Xcc-8004.3610.1at 3498.755 kb on - strand, within Xcc-8004.3610.1at 3498.857 kb on - strand, within Xcc-8004.3610.1at 3498.920 kb on + strand, within Xcc-8004.3610.1at 3498.921 kb on - strand, within Xcc-8004.3610.1at 3498.999 kb on - strand, within Xcc-8004.3610.1at 3498.999 kb on - strand, within Xcc-8004.3610.1at 3499.505 kb on - strand, within Xcc-8004.3612.1at 3499.538 kb on + strandat 3499.538 kb on + strandat 3499.538 kb on + strandat 3499.538 kb on + strandat 3499.538 kb on + strandat 3499.538 kb on + strandat 3499.538 kb on + strandat 3499.539 kb on - strandat 3499.539 kb on - strandat 3499.539 kb on - strandat 3499.581 kb on + strandat 3499.582 kb on - strandat 3499.812 kb on + strand, within Xcc-8004.3613.1at 3499.847 kb on + strand, within Xcc-8004.3613.1at 3499.847 kb on + strand, within Xcc-8004.3613.1at 3499.847 kb on + strand, within Xcc-8004.3613.1at 3499.847 kb on + strand, within Xcc-8004.3613.1at 3499.848 kb on - strand, within Xcc-8004.3613.1at 3499.946 kb on + strand, within Xcc-8004.3613.1at 3499.947 kb on - strand, within Xcc-8004.3613.1at 3500.056 kb on - strand, within Xcc-8004.3613.1at 3500.056 kb on - strand, within Xcc-8004.3613.1at 3500.069 kb on + strand, within Xcc-8004.3613.1at 3500.069 kb on + strand, within Xcc-8004.3613.1at 3500.070 kb on - strand, within Xcc-8004.3613.1at 3500.070 kb on - strand, within Xcc-8004.3613.1at 3500.094 kb on + strand, within Xcc-8004.3613.1at 3500.095 kb on - strand, within Xcc-8004.3613.1at 3500.095 kb on - strand, within Xcc-8004.3613.1at 3500.095 kb on - strand, within Xcc-8004.3613.1at 3500.095 kb on - strand, within Xcc-8004.3613.1at 3500.095 kb on - strand, within Xcc-8004.3613.1at 3500.095 kb on - strand, within Xcc-8004.3613.1at 3500.095 kb on - strand, within Xcc-8004.3613.1at 3500.351 kb on + strandat 3500.351 kb on + strandat 3500.351 kb on + strandat 3500.351 kb on + strandat 3500.352 kb on - strandat 3500.352 kb on - strandat 3500.352 kb on - strandat 3500.352 kb on - strandat 3500.352 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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3,498,324 + Xcc-8004.3610.1 0.25 +1.5
3,498,324 + Xcc-8004.3610.1 0.25 +0.1
3,498,324 + Xcc-8004.3610.1 0.25 +2.2
3,498,324 + Xcc-8004.3610.1 0.25 +0.2
3,498,325 - Xcc-8004.3610.1 0.25 -1.5
3,498,347 + Xcc-8004.3610.1 0.27 +0.4
3,498,347 + Xcc-8004.3610.1 0.27 -0.7
3,498,347 + Xcc-8004.3610.1 0.27 -0.1
3,498,348 - Xcc-8004.3610.1 0.28 +0.4
3,498,348 - Xcc-8004.3610.1 0.28 -1.3
3,498,348 - Xcc-8004.3610.1 0.28 +0.8
3,498,348 - Xcc-8004.3610.1 0.28 +0.5
3,498,359 + Xcc-8004.3610.1 0.29 -0.6
3,498,416 + Xcc-8004.3610.1 0.34 +1.0
3,498,416 + Xcc-8004.3610.1 0.34 -0.2
3,498,417 - Xcc-8004.3610.1 0.34 -0.9
3,498,417 - Xcc-8004.3610.1 0.34 +0.8
3,498,693 - Xcc-8004.3610.1 0.60 +0.5
3,498,693 - Xcc-8004.3610.1 0.60 +0.2
3,498,754 + Xcc-8004.3610.1 0.65 -2.2
3,498,755 - Xcc-8004.3610.1 0.66 -1.0
3,498,755 - Xcc-8004.3610.1 0.66 +1.7
3,498,755 - Xcc-8004.3610.1 0.66 -0.5
3,498,755 - Xcc-8004.3610.1 0.66 +0.0
3,498,857 - Xcc-8004.3610.1 0.75 -3.2
3,498,920 + Xcc-8004.3610.1 0.81 -0.5
3,498,921 - Xcc-8004.3610.1 0.81 -0.7
3,498,999 - Xcc-8004.3610.1 0.88 -0.3
3,498,999 - Xcc-8004.3610.1 0.88 +1.0
3,499,505 - Xcc-8004.3612.1 0.82 -1.7
3,499,538 + -0.7
3,499,538 + +0.4
3,499,538 + -0.8
3,499,538 + -1.5
3,499,538 + +0.1
3,499,538 + +1.1
3,499,538 + -1.0
3,499,539 - +1.2
3,499,539 - +1.0
3,499,539 - -0.4
3,499,581 + -0.8
3,499,582 - +1.1
3,499,812 + Xcc-8004.3613.1 0.31 -0.2
3,499,847 + Xcc-8004.3613.1 0.35 +1.0
3,499,847 + Xcc-8004.3613.1 0.35 -0.4
3,499,847 + Xcc-8004.3613.1 0.35 -1.2
3,499,847 + Xcc-8004.3613.1 0.35 +0.6
3,499,848 - Xcc-8004.3613.1 0.36 +0.7
3,499,946 + Xcc-8004.3613.1 0.49 +0.4
3,499,947 - Xcc-8004.3613.1 0.49 -0.2
3,500,056 - Xcc-8004.3613.1 0.63 -1.8
3,500,056 - Xcc-8004.3613.1 0.63 +1.8
3,500,069 + Xcc-8004.3613.1 0.65 -1.3
3,500,069 + Xcc-8004.3613.1 0.65 +2.3
3,500,070 - Xcc-8004.3613.1 0.65 -0.5
3,500,070 - Xcc-8004.3613.1 0.65 +1.6
3,500,094 + Xcc-8004.3613.1 0.68 +0.7
3,500,095 - Xcc-8004.3613.1 0.68 -0.1
3,500,095 - Xcc-8004.3613.1 0.68 -1.0
3,500,095 - Xcc-8004.3613.1 0.68 +0.7
3,500,095 - Xcc-8004.3613.1 0.68 -0.2
3,500,095 - Xcc-8004.3613.1 0.68 -1.3
3,500,095 - Xcc-8004.3613.1 0.68 +1.8
3,500,095 - Xcc-8004.3613.1 0.68 -0.3
3,500,351 + -1.5
3,500,351 + -0.3
3,500,351 + +1.8
3,500,351 + +1.6
3,500,352 - +0.7
3,500,352 - +0.3
3,500,352 - -1.3
3,500,352 - +1.5
3,500,352 - -1.9

Or see this region's nucleotide sequence