Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3602.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3600.1 and Xcc-8004.3601.1 are separated by 58 nucleotidesXcc-8004.3601.1 and Xcc-8004.3602.1 overlap by 4 nucleotidesXcc-8004.3602.1 and Xcc-8004.3603.1 are separated by 308 nucleotides Xcc-8004.3600.1: Xcc-8004.3600.1 - FIG01210495: hypothetical protein, at 3,490,020 to 3,490,493 Xcc-8004.3600.1 Xcc-8004.3601.1: Xcc-8004.3601.1 - RNA polymerase sigma-70 factor, at 3,490,552 to 3,491,115 Xcc-8004.3601.1 Xcc-8004.3602.1: Xcc-8004.3602.1 - FIG111991: hypothetical protein, at 3,491,112 to 3,491,939 Xcc-8004.3602.1 Xcc-8004.3603.1: Xcc-8004.3603.1 - Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1), at 3,492,248 to 3,493,297 Xcc-8004.3603.1 Position (kb) 3491 3492Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3490.137 kb on + strand, within Xcc-8004.3600.1at 3490.137 kb on + strand, within Xcc-8004.3600.1at 3490.138 kb on - strand, within Xcc-8004.3600.1at 3490.138 kb on - strand, within Xcc-8004.3600.1at 3490.138 kb on - strand, within Xcc-8004.3600.1at 3490.138 kb on - strand, within Xcc-8004.3600.1at 3490.161 kb on + strand, within Xcc-8004.3600.1at 3490.161 kb on + strand, within Xcc-8004.3600.1at 3490.161 kb on + strand, within Xcc-8004.3600.1at 3490.161 kb on + strand, within Xcc-8004.3600.1at 3490.161 kb on + strand, within Xcc-8004.3600.1at 3490.161 kb on + strand, within Xcc-8004.3600.1at 3490.161 kb on + strand, within Xcc-8004.3600.1at 3490.161 kb on + strand, within Xcc-8004.3600.1at 3490.161 kb on + strand, within Xcc-8004.3600.1at 3490.162 kb on - strand, within Xcc-8004.3600.1at 3490.162 kb on - strand, within Xcc-8004.3600.1at 3490.162 kb on - strand, within Xcc-8004.3600.1at 3490.162 kb on - strand, within Xcc-8004.3600.1at 3490.162 kb on - strand, within Xcc-8004.3600.1at 3490.162 kb on - strand, within Xcc-8004.3600.1at 3490.162 kb on - strand, within Xcc-8004.3600.1at 3490.162 kb on - strand, within Xcc-8004.3600.1at 3490.162 kb on - strand, within Xcc-8004.3600.1at 3490.221 kb on + strand, within Xcc-8004.3600.1at 3490.254 kb on + strand, within Xcc-8004.3600.1at 3490.255 kb on - strand, within Xcc-8004.3600.1at 3490.266 kb on + strand, within Xcc-8004.3600.1at 3490.266 kb on + strand, within Xcc-8004.3600.1at 3490.266 kb on + strand, within Xcc-8004.3600.1at 3490.266 kb on + strand, within Xcc-8004.3600.1at 3490.266 kb on + strand, within Xcc-8004.3600.1at 3490.266 kb on + strand, within Xcc-8004.3600.1at 3490.266 kb on + strand, within Xcc-8004.3600.1at 3490.266 kb on + strand, within Xcc-8004.3600.1at 3490.267 kb on - strand, within Xcc-8004.3600.1at 3490.267 kb on - strand, within Xcc-8004.3600.1at 3490.267 kb on - strand, within Xcc-8004.3600.1at 3490.267 kb on - strand, within Xcc-8004.3600.1at 3490.305 kb on + strand, within Xcc-8004.3600.1at 3490.306 kb on - strand, within Xcc-8004.3600.1at 3490.359 kb on + strand, within Xcc-8004.3600.1at 3490.359 kb on + strand, within Xcc-8004.3600.1at 3490.359 kb on + strand, within Xcc-8004.3600.1at 3490.359 kb on + strand, within Xcc-8004.3600.1at 3490.359 kb on + strand, within Xcc-8004.3600.1at 3490.359 kb on + strand, within Xcc-8004.3600.1at 3490.359 kb on + strand, within Xcc-8004.3600.1at 3490.359 kb on + strand, within Xcc-8004.3600.1at 3490.359 kb on + strand, within Xcc-8004.3600.1at 3490.359 kb on + strand, within Xcc-8004.3600.1at 3490.359 kb on + strand, within Xcc-8004.3600.1at 3490.360 kb on - strand, within Xcc-8004.3600.1at 3490.360 kb on - strand, within Xcc-8004.3600.1at 3490.360 kb on - strand, within Xcc-8004.3600.1at 3490.360 kb on - strand, within Xcc-8004.3600.1at 3490.360 kb on - strand, within Xcc-8004.3600.1at 3490.642 kb on + strand, within Xcc-8004.3601.1at 3490.643 kb on - strand, within Xcc-8004.3601.1at 3490.643 kb on - strand, within Xcc-8004.3601.1at 3490.643 kb on - strand, within Xcc-8004.3601.1at 3490.731 kb on + strand, within Xcc-8004.3601.1at 3490.732 kb on - strand, within Xcc-8004.3601.1at 3490.732 kb on - strand, within Xcc-8004.3601.1at 3490.732 kb on - strand, within Xcc-8004.3601.1at 3490.732 kb on - strand, within Xcc-8004.3601.1at 3490.732 kb on - strand, within Xcc-8004.3601.1at 3490.854 kb on + strand, within Xcc-8004.3601.1at 3490.855 kb on - strand, within Xcc-8004.3601.1at 3491.017 kb on + strand, within Xcc-8004.3601.1at 3491.017 kb on + strand, within Xcc-8004.3601.1at 3491.017 kb on + strand, within Xcc-8004.3601.1at 3491.017 kb on + strand, within Xcc-8004.3601.1at 3491.017 kb on + strand, within Xcc-8004.3601.1at 3491.017 kb on + strand, within Xcc-8004.3601.1at 3491.017 kb on + strand, within Xcc-8004.3601.1at 3491.017 kb on + strand, within Xcc-8004.3601.1at 3491.018 kb on - strand, within Xcc-8004.3601.1at 3491.018 kb on - strand, within Xcc-8004.3601.1at 3491.018 kb on - strand, within Xcc-8004.3601.1at 3491.018 kb on - strand, within Xcc-8004.3601.1at 3491.169 kb on + strandat 3491.169 kb on + strandat 3491.169 kb on + strandat 3491.169 kb on + strandat 3491.169 kb on + strandat 3491.170 kb on - strandat 3491.170 kb on - strandat 3491.170 kb on - strandat 3491.170 kb on - strandat 3491.170 kb on - strandat 3491.170 kb on - strandat 3491.170 kb on - strandat 3491.170 kb on - strandat 3491.170 kb on - strandat 3491.170 kb on - strandat 3491.354 kb on + strand, within Xcc-8004.3602.1at 3491.355 kb on - strand, within Xcc-8004.3602.1at 3491.355 kb on - strand, within Xcc-8004.3602.1at 3491.637 kb on + strand, within Xcc-8004.3602.1at 3491.637 kb on + strand, within Xcc-8004.3602.1at 3491.637 kb on + strand, within Xcc-8004.3602.1at 3491.638 kb on - strand, within Xcc-8004.3602.1at 3491.638 kb on - strand, within Xcc-8004.3602.1at 3491.638 kb on - strand, within Xcc-8004.3602.1at 3491.638 kb on - strand, within Xcc-8004.3602.1at 3491.638 kb on - strand, within Xcc-8004.3602.1at 3491.638 kb on - strand, within Xcc-8004.3602.1at 3491.638 kb on - strand, within Xcc-8004.3602.1at 3492.203 kb on + strandat 3492.203 kb on + strandat 3492.203 kb on + strandat 3492.204 kb on - strandat 3492.264 kb on + strandat 3492.264 kb on + strandat 3492.555 kb on - strand, within Xcc-8004.3603.1at 3492.555 kb on - strand, within Xcc-8004.3603.1at 3492.555 kb on - strand, within Xcc-8004.3603.1at 3492.587 kb on + strand, within Xcc-8004.3603.1at 3492.587 kb on + strand, within Xcc-8004.3603.1at 3492.588 kb on - strand, within Xcc-8004.3603.1at 3492.588 kb on - strand, within Xcc-8004.3603.1at 3492.588 kb on - strand, within Xcc-8004.3603.1at 3492.588 kb on - strand, within Xcc-8004.3603.1at 3492.588 kb on - strand, within Xcc-8004.3603.1at 3492.588 kb on - strand, within Xcc-8004.3603.1at 3492.588 kb on - strand, within Xcc-8004.3603.1at 3492.588 kb on - strand, within Xcc-8004.3603.1at 3492.596 kb on + strand, within Xcc-8004.3603.1at 3492.596 kb on + strand, within Xcc-8004.3603.1at 3492.596 kb on + strand, within Xcc-8004.3603.1at 3492.597 kb on - strand, within Xcc-8004.3603.1at 3492.597 kb on - strand, within Xcc-8004.3603.1at 3492.911 kb on + strand, within Xcc-8004.3603.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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3,490,137 + Xcc-8004.3600.1 0.25 +0.7
3,490,137 + Xcc-8004.3600.1 0.25 -0.5
3,490,138 - Xcc-8004.3600.1 0.25 +1.4
3,490,138 - Xcc-8004.3600.1 0.25 -1.3
3,490,138 - Xcc-8004.3600.1 0.25 -0.2
3,490,138 - Xcc-8004.3600.1 0.25 -1.2
3,490,161 + Xcc-8004.3600.1 0.30 -2.2
3,490,161 + Xcc-8004.3600.1 0.30 +0.4
3,490,161 + Xcc-8004.3600.1 0.30 +1.0
3,490,161 + Xcc-8004.3600.1 0.30 -0.9
3,490,161 + Xcc-8004.3600.1 0.30 +0.6
3,490,161 + Xcc-8004.3600.1 0.30 +0.1
3,490,161 + Xcc-8004.3600.1 0.30 -0.6
3,490,161 + Xcc-8004.3600.1 0.30 +1.0
3,490,161 + Xcc-8004.3600.1 0.30 +0.9
3,490,162 - Xcc-8004.3600.1 0.30 -1.4
3,490,162 - Xcc-8004.3600.1 0.30 -1.5
3,490,162 - Xcc-8004.3600.1 0.30 +1.0
3,490,162 - Xcc-8004.3600.1 0.30 -1.3
3,490,162 - Xcc-8004.3600.1 0.30 -1.0
3,490,162 - Xcc-8004.3600.1 0.30 +0.1
3,490,162 - Xcc-8004.3600.1 0.30 -0.2
3,490,162 - Xcc-8004.3600.1 0.30 +0.1
3,490,162 - Xcc-8004.3600.1 0.30 -0.2
3,490,221 + Xcc-8004.3600.1 0.42 -0.1
3,490,254 + Xcc-8004.3600.1 0.49 -0.9
3,490,255 - Xcc-8004.3600.1 0.50 -0.6
3,490,266 + Xcc-8004.3600.1 0.52 -0.1
3,490,266 + Xcc-8004.3600.1 0.52 +0.2
3,490,266 + Xcc-8004.3600.1 0.52 -2.0
3,490,266 + Xcc-8004.3600.1 0.52 +0.2
3,490,266 + Xcc-8004.3600.1 0.52 -0.6
3,490,266 + Xcc-8004.3600.1 0.52 +0.2
3,490,266 + Xcc-8004.3600.1 0.52 -0.4
3,490,266 + Xcc-8004.3600.1 0.52 -0.9
3,490,267 - Xcc-8004.3600.1 0.52 +1.9
3,490,267 - Xcc-8004.3600.1 0.52 +0.2
3,490,267 - Xcc-8004.3600.1 0.52 +0.1
3,490,267 - Xcc-8004.3600.1 0.52 -0.2
3,490,305 + Xcc-8004.3600.1 0.60 -0.0
3,490,306 - Xcc-8004.3600.1 0.60 +0.1
3,490,359 + Xcc-8004.3600.1 0.72 -1.2
3,490,359 + Xcc-8004.3600.1 0.72 -0.2
3,490,359 + Xcc-8004.3600.1 0.72 -0.3
3,490,359 + Xcc-8004.3600.1 0.72 +1.1
3,490,359 + Xcc-8004.3600.1 0.72 +1.0
3,490,359 + Xcc-8004.3600.1 0.72 -0.3
3,490,359 + Xcc-8004.3600.1 0.72 +1.0
3,490,359 + Xcc-8004.3600.1 0.72 -0.8
3,490,359 + Xcc-8004.3600.1 0.72 +0.4
3,490,359 + Xcc-8004.3600.1 0.72 -1.1
3,490,359 + Xcc-8004.3600.1 0.72 -0.1
3,490,360 - Xcc-8004.3600.1 0.72 -0.3
3,490,360 - Xcc-8004.3600.1 0.72 -0.1
3,490,360 - Xcc-8004.3600.1 0.72 +0.5
3,490,360 - Xcc-8004.3600.1 0.72 +1.8
3,490,360 - Xcc-8004.3600.1 0.72 -1.7
3,490,642 + Xcc-8004.3601.1 0.16 +0.5
3,490,643 - Xcc-8004.3601.1 0.16 -0.9
3,490,643 - Xcc-8004.3601.1 0.16 -0.3
3,490,643 - Xcc-8004.3601.1 0.16 -0.5
3,490,731 + Xcc-8004.3601.1 0.32 +0.8
3,490,732 - Xcc-8004.3601.1 0.32 +0.0
3,490,732 - Xcc-8004.3601.1 0.32 +0.4
3,490,732 - Xcc-8004.3601.1 0.32 +0.5
3,490,732 - Xcc-8004.3601.1 0.32 -1.8
3,490,732 - Xcc-8004.3601.1 0.32 -0.4
3,490,854 + Xcc-8004.3601.1 0.54 -1.1
3,490,855 - Xcc-8004.3601.1 0.54 +0.3
3,491,017 + Xcc-8004.3601.1 0.82 +2.8
3,491,017 + Xcc-8004.3601.1 0.82 +0.3
3,491,017 + Xcc-8004.3601.1 0.82 -1.5
3,491,017 + Xcc-8004.3601.1 0.82 -0.3
3,491,017 + Xcc-8004.3601.1 0.82 +0.5
3,491,017 + Xcc-8004.3601.1 0.82 -2.3
3,491,017 + Xcc-8004.3601.1 0.82 +0.9
3,491,017 + Xcc-8004.3601.1 0.82 +1.1
3,491,018 - Xcc-8004.3601.1 0.83 +0.2
3,491,018 - Xcc-8004.3601.1 0.83 +1.4
3,491,018 - Xcc-8004.3601.1 0.83 +0.4
3,491,018 - Xcc-8004.3601.1 0.83 -0.1
3,491,169 + -0.1
3,491,169 + -1.3
3,491,169 + +0.1
3,491,169 + +0.7
3,491,169 + -0.5
3,491,170 - +1.3
3,491,170 - +0.8
3,491,170 - +1.0
3,491,170 - -2.8
3,491,170 - -0.3
3,491,170 - -0.2
3,491,170 - -0.5
3,491,170 - +0.9
3,491,170 - -0.2
3,491,170 - -1.2
3,491,354 + Xcc-8004.3602.1 0.29 +0.9
3,491,355 - Xcc-8004.3602.1 0.29 +0.5
3,491,355 - Xcc-8004.3602.1 0.29 +2.2
3,491,637 + Xcc-8004.3602.1 0.63 +1.4
3,491,637 + Xcc-8004.3602.1 0.63 +0.1
3,491,637 + Xcc-8004.3602.1 0.63 -1.5
3,491,638 - Xcc-8004.3602.1 0.64 -0.8
3,491,638 - Xcc-8004.3602.1 0.64 -0.4
3,491,638 - Xcc-8004.3602.1 0.64 +1.0
3,491,638 - Xcc-8004.3602.1 0.64 +2.0
3,491,638 - Xcc-8004.3602.1 0.64 +0.3
3,491,638 - Xcc-8004.3602.1 0.64 +0.1
3,491,638 - Xcc-8004.3602.1 0.64 +0.4
3,492,203 + -0.7
3,492,203 + +3.2
3,492,203 + +2.4
3,492,204 - +0.2
3,492,264 + -1.6
3,492,264 + +1.0
3,492,555 - Xcc-8004.3603.1 0.29 -0.4
3,492,555 - Xcc-8004.3603.1 0.29 +0.1
3,492,555 - Xcc-8004.3603.1 0.29 -0.9
3,492,587 + Xcc-8004.3603.1 0.32 +0.2
3,492,587 + Xcc-8004.3603.1 0.32 -0.2
3,492,588 - Xcc-8004.3603.1 0.32 +1.1
3,492,588 - Xcc-8004.3603.1 0.32 +0.5
3,492,588 - Xcc-8004.3603.1 0.32 -0.4
3,492,588 - Xcc-8004.3603.1 0.32 -0.3
3,492,588 - Xcc-8004.3603.1 0.32 +0.2
3,492,588 - Xcc-8004.3603.1 0.32 +0.8
3,492,588 - Xcc-8004.3603.1 0.32 -0.6
3,492,588 - Xcc-8004.3603.1 0.32 +0.4
3,492,596 + Xcc-8004.3603.1 0.33 -1.0
3,492,596 + Xcc-8004.3603.1 0.33 +0.1
3,492,596 + Xcc-8004.3603.1 0.33 +1.5
3,492,597 - Xcc-8004.3603.1 0.33 -0.6
3,492,597 - Xcc-8004.3603.1 0.33 -0.6
3,492,911 + Xcc-8004.3603.1 0.63 -0.2

Or see this region's nucleotide sequence