Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1919.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.1917.1 and Xcc-8004.1918.1 are separated by 7 nucleotidesXcc-8004.1918.1 and Xcc-8004.1919.1 are separated by 41 nucleotidesXcc-8004.1919.1 and Xcc-8004.1920.1 are separated by 202 nucleotides Xcc-8004.1917.1: Xcc-8004.1917.1 - Glutathione reductase (EC 1.8.1.7), at 1,847,313 to 1,848,683 Xcc-8004.1917.1 Xcc-8004.1918.1: Xcc-8004.1918.1 - methylated-DNA-protein-cysteine S-methyltransferase related protein, at 1,848,691 to 1,849,284 Xcc-8004.1918.1 Xcc-8004.1919.1: Xcc-8004.1919.1 - FIG056164: rhomboid family serine protease, at 1,849,326 to 1,850,012 Xcc-8004.1919.1 Xcc-8004.1920.1: Xcc-8004.1920.1 - Metallopeptidase, at 1,850,215 to 1,852,227 Xcc-8004.1920.1 Position (kb) 1849 1850 1851Strain fitness (log2 ratio) -2 -1 0 1 2at 1849.283 kb on - strandat 1849.283 kb on - strandat 1849.283 kb on - strandat 1849.530 kb on + strand, within Xcc-8004.1919.1at 1849.638 kb on + strand, within Xcc-8004.1919.1at 1849.638 kb on + strand, within Xcc-8004.1919.1at 1849.638 kb on + strand, within Xcc-8004.1919.1at 1849.638 kb on + strand, within Xcc-8004.1919.1at 1849.638 kb on + strand, within Xcc-8004.1919.1at 1849.638 kb on + strand, within Xcc-8004.1919.1at 1849.639 kb on - strand, within Xcc-8004.1919.1at 1849.639 kb on - strand, within Xcc-8004.1919.1at 1849.639 kb on - strand, within Xcc-8004.1919.1at 1849.639 kb on - strand, within Xcc-8004.1919.1at 1849.639 kb on - strand, within Xcc-8004.1919.1at 1849.639 kb on - strand, within Xcc-8004.1919.1at 1849.639 kb on - strand, within Xcc-8004.1919.1at 1849.639 kb on - strand, within Xcc-8004.1919.1at 1849.641 kb on + strand, within Xcc-8004.1919.1at 1849.641 kb on + strand, within Xcc-8004.1919.1at 1849.641 kb on + strand, within Xcc-8004.1919.1at 1849.641 kb on + strand, within Xcc-8004.1919.1at 1849.642 kb on - strand, within Xcc-8004.1919.1at 1849.642 kb on - strand, within Xcc-8004.1919.1at 1849.642 kb on - strand, within Xcc-8004.1919.1at 1849.642 kb on - strand, within Xcc-8004.1919.1at 1850.042 kb on + strandat 1850.043 kb on - strandat 1850.105 kb on + strandat 1850.105 kb on + strandat 1850.106 kb on - strandat 1850.190 kb on - strandat 1850.211 kb on + strandat 1850.212 kb on - strandat 1850.564 kb on + strand, within Xcc-8004.1920.1at 1850.564 kb on + strand, within Xcc-8004.1920.1at 1850.564 kb on + strand, within Xcc-8004.1920.1at 1850.564 kb on + strand, within Xcc-8004.1920.1at 1850.565 kb on - strand, within Xcc-8004.1920.1at 1850.565 kb on - strand, within Xcc-8004.1920.1at 1850.574 kb on - strand, within Xcc-8004.1920.1at 1850.574 kb on - strand, within Xcc-8004.1920.1at 1850.574 kb on - strand, within Xcc-8004.1920.1at 1850.584 kb on + strand, within Xcc-8004.1920.1at 1850.584 kb on + strand, within Xcc-8004.1920.1at 1850.585 kb on - strand, within Xcc-8004.1920.1at 1850.585 kb on - strand, within Xcc-8004.1920.1at 1850.718 kb on - strand, within Xcc-8004.1920.1at 1850.726 kb on + strand, within Xcc-8004.1920.1at 1850.726 kb on + strand, within Xcc-8004.1920.1at 1850.726 kb on + strand, within Xcc-8004.1920.1at 1850.727 kb on - strand, within Xcc-8004.1920.1at 1850.727 kb on - strand, within Xcc-8004.1920.1at 1850.727 kb on - strand, within Xcc-8004.1920.1at 1850.813 kb on + strand, within Xcc-8004.1920.1at 1850.813 kb on + strand, within Xcc-8004.1920.1at 1850.813 kb on + strand, within Xcc-8004.1920.1at 1850.960 kb on + strand, within Xcc-8004.1920.1at 1850.960 kb on + strand, within Xcc-8004.1920.1at 1850.960 kb on + strand, within Xcc-8004.1920.1at 1850.961 kb on - strand, within Xcc-8004.1920.1at 1850.961 kb on - strand, within Xcc-8004.1920.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
remove
1,849,283 - +0.8
1,849,283 - -0.3
1,849,283 - -1.7
1,849,530 + Xcc-8004.1919.1 0.30 +0.6
1,849,638 + Xcc-8004.1919.1 0.45 +0.1
1,849,638 + Xcc-8004.1919.1 0.45 -0.7
1,849,638 + Xcc-8004.1919.1 0.45 -1.1
1,849,638 + Xcc-8004.1919.1 0.45 -2.0
1,849,638 + Xcc-8004.1919.1 0.45 -0.1
1,849,638 + Xcc-8004.1919.1 0.45 +0.2
1,849,639 - Xcc-8004.1919.1 0.46 -0.3
1,849,639 - Xcc-8004.1919.1 0.46 -0.0
1,849,639 - Xcc-8004.1919.1 0.46 +0.3
1,849,639 - Xcc-8004.1919.1 0.46 -0.2
1,849,639 - Xcc-8004.1919.1 0.46 -1.1
1,849,639 - Xcc-8004.1919.1 0.46 +0.6
1,849,639 - Xcc-8004.1919.1 0.46 +0.4
1,849,639 - Xcc-8004.1919.1 0.46 -0.7
1,849,641 + Xcc-8004.1919.1 0.46 -0.7
1,849,641 + Xcc-8004.1919.1 0.46 +1.0
1,849,641 + Xcc-8004.1919.1 0.46 -2.1
1,849,641 + Xcc-8004.1919.1 0.46 -0.9
1,849,642 - Xcc-8004.1919.1 0.46 -0.2
1,849,642 - Xcc-8004.1919.1 0.46 -2.0
1,849,642 - Xcc-8004.1919.1 0.46 -0.3
1,849,642 - Xcc-8004.1919.1 0.46 +0.1
1,850,042 + -0.2
1,850,043 - -0.1
1,850,105 + -0.5
1,850,105 + +0.6
1,850,106 - +0.5
1,850,190 - +1.9
1,850,211 + +0.7
1,850,212 - -0.0
1,850,564 + Xcc-8004.1920.1 0.17 +0.4
1,850,564 + Xcc-8004.1920.1 0.17 +0.9
1,850,564 + Xcc-8004.1920.1 0.17 -1.6
1,850,564 + Xcc-8004.1920.1 0.17 +0.2
1,850,565 - Xcc-8004.1920.1 0.17 +1.0
1,850,565 - Xcc-8004.1920.1 0.17 +1.2
1,850,574 - Xcc-8004.1920.1 0.18 +1.1
1,850,574 - Xcc-8004.1920.1 0.18 -0.6
1,850,574 - Xcc-8004.1920.1 0.18 +0.1
1,850,584 + Xcc-8004.1920.1 0.18 -0.8
1,850,584 + Xcc-8004.1920.1 0.18 +0.1
1,850,585 - Xcc-8004.1920.1 0.18 +0.2
1,850,585 - Xcc-8004.1920.1 0.18 +0.1
1,850,718 - Xcc-8004.1920.1 0.25 -0.1
1,850,726 + Xcc-8004.1920.1 0.25 +1.6
1,850,726 + Xcc-8004.1920.1 0.25 +0.8
1,850,726 + Xcc-8004.1920.1 0.25 +1.0
1,850,727 - Xcc-8004.1920.1 0.25 -1.6
1,850,727 - Xcc-8004.1920.1 0.25 +0.2
1,850,727 - Xcc-8004.1920.1 0.25 +1.0
1,850,813 + Xcc-8004.1920.1 0.30 +1.9
1,850,813 + Xcc-8004.1920.1 0.30 -0.1
1,850,813 + Xcc-8004.1920.1 0.30 +1.8
1,850,960 + Xcc-8004.1920.1 0.37 +0.2
1,850,960 + Xcc-8004.1920.1 0.37 -1.2
1,850,960 + Xcc-8004.1920.1 0.37 -0.2
1,850,961 - Xcc-8004.1920.1 0.37 -1.0
1,850,961 - Xcc-8004.1920.1 0.37 +0.0

Or see this region's nucleotide sequence