Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1877.1 and Xcc-8004.1878.1 are separated by 385 nucleotides Xcc-8004.1878.1 and Xcc-8004.1879.1 are separated by 122 nucleotides Xcc-8004.1879.1 and Xcc-8004.1880.1 are separated by 0 nucleotides
Xcc-8004.1877.1: Xcc-8004.1877.1 - Ferric siderophore transport system, periplasmic binding protein TonB, at 1,810,239 to 1,810,916
Xcc-8004.1877.1
Xcc-8004.1878.1: Xcc-8004.1878.1 - Protein of unknown function DUF541, at 1,811,302 to 1,812,039
Xcc-8004.1878.1
Xcc-8004.1879.1: Xcc-8004.1879.1 - Septum formation protein Maf, at 1,812,162 to 1,812,734
Xcc-8004.1879.1
Xcc-8004.1880.1: Xcc-8004.1880.1 - Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-), at 1,812,735 to 1,814,234
Xcc-8004.1880.1
Position (kb) 1811
1812
1813 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1810.329 kb on + strand, within Xcc-8004.1877.1 at 1810.329 kb on + strand, within Xcc-8004.1877.1 at 1810.330 kb on - strand, within Xcc-8004.1877.1 at 1810.337 kb on + strand, within Xcc-8004.1877.1 at 1810.338 kb on - strand, within Xcc-8004.1877.1 at 1810.380 kb on + strand, within Xcc-8004.1877.1 at 1810.380 kb on + strand, within Xcc-8004.1877.1 at 1810.380 kb on + strand, within Xcc-8004.1877.1 at 1810.380 kb on + strand, within Xcc-8004.1877.1 at 1810.380 kb on + strand, within Xcc-8004.1877.1 at 1810.380 kb on + strand, within Xcc-8004.1877.1 at 1810.380 kb on + strand, within Xcc-8004.1877.1 at 1810.381 kb on - strand, within Xcc-8004.1877.1 at 1810.381 kb on - strand, within Xcc-8004.1877.1 at 1810.381 kb on - strand, within Xcc-8004.1877.1 at 1810.381 kb on - strand, within Xcc-8004.1877.1 at 1810.381 kb on - strand, within Xcc-8004.1877.1 at 1810.471 kb on + strand, within Xcc-8004.1877.1 at 1810.495 kb on + strand, within Xcc-8004.1877.1 at 1810.495 kb on + strand, within Xcc-8004.1877.1 at 1810.495 kb on + strand, within Xcc-8004.1877.1 at 1810.495 kb on + strand, within Xcc-8004.1877.1 at 1810.495 kb on + strand, within Xcc-8004.1877.1 at 1810.496 kb on - strand, within Xcc-8004.1877.1 at 1810.496 kb on - strand, within Xcc-8004.1877.1 at 1810.496 kb on - strand, within Xcc-8004.1877.1 at 1810.496 kb on - strand, within Xcc-8004.1877.1 at 1810.969 kb on + strand at 1810.969 kb on + strand at 1810.969 kb on + strand at 1810.969 kb on + strand at 1810.970 kb on - strand at 1810.970 kb on - strand at 1810.970 kb on - strand at 1810.970 kb on - strand at 1810.970 kb on - strand at 1810.986 kb on + strand at 1810.986 kb on + strand at 1810.986 kb on + strand at 1810.986 kb on + strand at 1810.986 kb on + strand at 1810.986 kb on + strand at 1811.101 kb on + strand at 1811.102 kb on - strand at 1811.160 kb on + strand at 1811.160 kb on + strand at 1811.160 kb on + strand at 1811.160 kb on + strand at 1811.161 kb on - strand at 1811.161 kb on - strand at 1811.161 kb on - strand at 1811.222 kb on - strand at 1811.222 kb on - strand at 1811.285 kb on - strand at 1811.296 kb on - strand at 1811.296 kb on - strand at 1811.495 kb on + strand, within Xcc-8004.1878.1 at 1811.496 kb on - strand, within Xcc-8004.1878.1 at 1811.496 kb on - strand, within Xcc-8004.1878.1 at 1811.549 kb on + strand, within Xcc-8004.1878.1 at 1811.549 kb on + strand, within Xcc-8004.1878.1 at 1811.549 kb on + strand, within Xcc-8004.1878.1 at 1811.549 kb on + strand, within Xcc-8004.1878.1 at 1811.550 kb on - strand, within Xcc-8004.1878.1 at 1811.550 kb on - strand, within Xcc-8004.1878.1 at 1811.550 kb on - strand, within Xcc-8004.1878.1 at 1811.550 kb on - strand, within Xcc-8004.1878.1 at 1811.626 kb on + strand, within Xcc-8004.1878.1 at 1811.627 kb on - strand, within Xcc-8004.1878.1 at 1811.627 kb on - strand, within Xcc-8004.1878.1 at 1811.717 kb on + strand, within Xcc-8004.1878.1 at 1811.717 kb on + strand, within Xcc-8004.1878.1 at 1811.717 kb on + strand, within Xcc-8004.1878.1 at 1811.717 kb on + strand, within Xcc-8004.1878.1 at 1811.717 kb on + strand, within Xcc-8004.1878.1 at 1811.717 kb on + strand, within Xcc-8004.1878.1 at 1811.717 kb on + strand, within Xcc-8004.1878.1 at 1811.718 kb on - strand, within Xcc-8004.1878.1 at 1811.718 kb on - strand, within Xcc-8004.1878.1 at 1811.718 kb on - strand, within Xcc-8004.1878.1 at 1811.718 kb on - strand, within Xcc-8004.1878.1 at 1811.718 kb on - strand, within Xcc-8004.1878.1 at 1811.718 kb on - strand, within Xcc-8004.1878.1 at 1811.718 kb on - strand, within Xcc-8004.1878.1 at 1811.802 kb on + strand, within Xcc-8004.1878.1 at 1811.802 kb on + strand, within Xcc-8004.1878.1 at 1811.802 kb on + strand, within Xcc-8004.1878.1 at 1811.803 kb on - strand, within Xcc-8004.1878.1 at 1811.803 kb on - strand, within Xcc-8004.1878.1 at 1811.803 kb on - strand, within Xcc-8004.1878.1 at 1811.803 kb on - strand, within Xcc-8004.1878.1 at 1811.951 kb on + strand, within Xcc-8004.1878.1 at 1811.951 kb on + strand, within Xcc-8004.1878.1 at 1811.951 kb on + strand, within Xcc-8004.1878.1 at 1811.951 kb on + strand, within Xcc-8004.1878.1 at 1811.951 kb on + strand, within Xcc-8004.1878.1 at 1811.951 kb on + strand, within Xcc-8004.1878.1 at 1811.952 kb on - strand, within Xcc-8004.1878.1 at 1811.952 kb on - strand, within Xcc-8004.1878.1 at 1811.952 kb on - strand, within Xcc-8004.1878.1 at 1811.952 kb on - strand, within Xcc-8004.1878.1 at 1812.033 kb on + strand at 1812.034 kb on - strand at 1812.034 kb on - strand at 1812.085 kb on + strand at 1812.085 kb on + strand at 1812.085 kb on + strand at 1812.086 kb on - strand at 1812.086 kb on - strand at 1812.086 kb on - strand at 1812.086 kb on - strand at 1812.086 kb on - strand at 1812.150 kb on + strand at 1812.150 kb on + strand at 1812.150 kb on + strand at 1812.150 kb on + strand at 1812.150 kb on + strand at 1812.150 kb on + strand at 1812.150 kb on + strand at 1812.150 kb on + strand at 1812.151 kb on - strand at 1812.151 kb on - strand at 1812.151 kb on - strand at 1812.151 kb on - strand at 1812.151 kb on - strand at 1812.151 kb on - strand at 1812.151 kb on - strand at 1812.151 kb on - strand at 1812.151 kb on - strand at 1812.151 kb on - strand at 1812.168 kb on + strand at 1812.169 kb on - strand at 1812.169 kb on - strand at 1812.169 kb on - strand at 1812.169 kb on - strand at 1812.285 kb on + strand, within Xcc-8004.1879.1 at 1812.285 kb on + strand, within Xcc-8004.1879.1 at 1812.285 kb on + strand, within Xcc-8004.1879.1 at 1812.285 kb on + strand, within Xcc-8004.1879.1 at 1812.285 kb on + strand, within Xcc-8004.1879.1 at 1812.285 kb on + strand, within Xcc-8004.1879.1 at 1812.285 kb on + strand, within Xcc-8004.1879.1 at 1812.286 kb on - strand, within Xcc-8004.1879.1 at 1812.286 kb on - strand, within Xcc-8004.1879.1 at 1812.286 kb on - strand, within Xcc-8004.1879.1 at 1812.286 kb on - strand, within Xcc-8004.1879.1 at 1812.286 kb on - strand, within Xcc-8004.1879.1 at 1812.286 kb on - strand, within Xcc-8004.1879.1 at 1812.286 kb on - strand, within Xcc-8004.1879.1 at 1812.286 kb on - strand, within Xcc-8004.1879.1 at 1812.286 kb on - strand, within Xcc-8004.1879.1 at 1812.286 kb on - strand, within Xcc-8004.1879.1 at 1812.286 kb on - strand, within Xcc-8004.1879.1 at 1812.335 kb on - strand, within Xcc-8004.1879.1 at 1812.576 kb on + strand, within Xcc-8004.1879.1 at 1812.577 kb on - strand, within Xcc-8004.1879.1 at 1812.648 kb on - strand, within Xcc-8004.1879.1 at 1812.648 kb on - strand, within Xcc-8004.1879.1 at 1812.666 kb on + strand, within Xcc-8004.1879.1 at 1812.667 kb on - strand, within Xcc-8004.1879.1 at 1812.667 kb on - strand, within Xcc-8004.1879.1 at 1812.732 kb on + strand at 1812.732 kb on + strand at 1812.732 kb on + strand at 1812.732 kb on + strand at 1812.732 kb on + strand at 1812.732 kb on + strand at 1812.732 kb on + strand at 1812.732 kb on + strand at 1812.732 kb on + strand at 1812.733 kb on - strand at 1812.733 kb on - strand at 1812.733 kb on - strand at 1812.733 kb on - strand at 1812.733 kb on - strand at 1812.733 kb on - strand at 1812.818 kb on + strand at 1812.854 kb on + strand at 1812.854 kb on + strand at 1812.854 kb on + strand at 1812.854 kb on + strand at 1812.854 kb on + strand at 1812.854 kb on + strand at 1812.855 kb on - strand at 1812.858 kb on + strand at 1812.858 kb on + strand at 1812.858 kb on + strand at 1812.858 kb on + strand at 1812.858 kb on + strand at 1812.858 kb on + strand at 1812.858 kb on + strand at 1812.858 kb on + strand at 1812.858 kb on + strand at 1812.859 kb on - strand at 1812.859 kb on - strand at 1812.859 kb on - strand at 1812.859 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 1,810,329 + Xcc-8004.1877.1 0.13 -0.1 1,810,329 + Xcc-8004.1877.1 0.13 +0.3 1,810,330 - Xcc-8004.1877.1 0.13 +1.1 1,810,337 + Xcc-8004.1877.1 0.14 +0.4 1,810,338 - Xcc-8004.1877.1 0.15 +0.7 1,810,380 + Xcc-8004.1877.1 0.21 -1.7 1,810,380 + Xcc-8004.1877.1 0.21 +1.1 1,810,380 + Xcc-8004.1877.1 0.21 +0.0 1,810,380 + Xcc-8004.1877.1 0.21 -0.2 1,810,380 + Xcc-8004.1877.1 0.21 -0.9 1,810,380 + Xcc-8004.1877.1 0.21 +0.3 1,810,380 + Xcc-8004.1877.1 0.21 -1.0 1,810,381 - Xcc-8004.1877.1 0.21 -0.4 1,810,381 - Xcc-8004.1877.1 0.21 -0.1 1,810,381 - Xcc-8004.1877.1 0.21 -0.2 1,810,381 - Xcc-8004.1877.1 0.21 -0.3 1,810,381 - Xcc-8004.1877.1 0.21 +0.6 1,810,471 + Xcc-8004.1877.1 0.34 +0.8 1,810,495 + Xcc-8004.1877.1 0.38 -0.2 1,810,495 + Xcc-8004.1877.1 0.38 +1.0 1,810,495 + Xcc-8004.1877.1 0.38 -0.6 1,810,495 + Xcc-8004.1877.1 0.38 +0.0 1,810,495 + Xcc-8004.1877.1 0.38 +0.1 1,810,496 - Xcc-8004.1877.1 0.38 -2.3 1,810,496 - Xcc-8004.1877.1 0.38 -0.6 1,810,496 - Xcc-8004.1877.1 0.38 -1.1 1,810,496 - Xcc-8004.1877.1 0.38 -1.6 1,810,969 + -1.6 1,810,969 + +1.1 1,810,969 + -1.3 1,810,969 + +0.2 1,810,970 - -0.2 1,810,970 - +1.1 1,810,970 - -0.9 1,810,970 - +0.8 1,810,970 - +0.5 1,810,986 + +1.1 1,810,986 + +0.0 1,810,986 + -1.0 1,810,986 + +1.3 1,810,986 + -0.8 1,810,986 + +1.2 1,811,101 + +2.2 1,811,102 - -0.7 1,811,160 + +0.1 1,811,160 + -0.5 1,811,160 + -0.6 1,811,160 + +1.6 1,811,161 - +0.9 1,811,161 - +2.8 1,811,161 - +0.0 1,811,222 - -0.2 1,811,222 - +0.4 1,811,285 - +2.3 1,811,296 - -1.4 1,811,296 - +1.7 1,811,495 + Xcc-8004.1878.1 0.26 -1.6 1,811,496 - Xcc-8004.1878.1 0.26 -1.0 1,811,496 - Xcc-8004.1878.1 0.26 -0.1 1,811,549 + Xcc-8004.1878.1 0.33 -2.6 1,811,549 + Xcc-8004.1878.1 0.33 -0.3 1,811,549 + Xcc-8004.1878.1 0.33 +0.6 1,811,549 + Xcc-8004.1878.1 0.33 +0.9 1,811,550 - Xcc-8004.1878.1 0.34 +0.3 1,811,550 - Xcc-8004.1878.1 0.34 -0.6 1,811,550 - Xcc-8004.1878.1 0.34 +0.7 1,811,550 - Xcc-8004.1878.1 0.34 +2.6 1,811,626 + Xcc-8004.1878.1 0.44 -1.3 1,811,627 - Xcc-8004.1878.1 0.44 +0.4 1,811,627 - Xcc-8004.1878.1 0.44 +0.4 1,811,717 + Xcc-8004.1878.1 0.56 +1.3 1,811,717 + Xcc-8004.1878.1 0.56 +1.2 1,811,717 + Xcc-8004.1878.1 0.56 -0.6 1,811,717 + Xcc-8004.1878.1 0.56 +1.0 1,811,717 + Xcc-8004.1878.1 0.56 +0.2 1,811,717 + Xcc-8004.1878.1 0.56 -1.4 1,811,717 + Xcc-8004.1878.1 0.56 -1.5 1,811,718 - Xcc-8004.1878.1 0.56 -0.2 1,811,718 - Xcc-8004.1878.1 0.56 -0.9 1,811,718 - Xcc-8004.1878.1 0.56 -0.2 1,811,718 - Xcc-8004.1878.1 0.56 -1.1 1,811,718 - Xcc-8004.1878.1 0.56 +0.4 1,811,718 - Xcc-8004.1878.1 0.56 -0.5 1,811,718 - Xcc-8004.1878.1 0.56 -1.5 1,811,802 + Xcc-8004.1878.1 0.68 +1.1 1,811,802 + Xcc-8004.1878.1 0.68 +0.0 1,811,802 + Xcc-8004.1878.1 0.68 +1.0 1,811,803 - Xcc-8004.1878.1 0.68 +1.1 1,811,803 - Xcc-8004.1878.1 0.68 +1.7 1,811,803 - Xcc-8004.1878.1 0.68 -1.5 1,811,803 - Xcc-8004.1878.1 0.68 -1.6 1,811,951 + Xcc-8004.1878.1 0.88 +0.3 1,811,951 + Xcc-8004.1878.1 0.88 -0.3 1,811,951 + Xcc-8004.1878.1 0.88 -0.4 1,811,951 + Xcc-8004.1878.1 0.88 +1.0 1,811,951 + Xcc-8004.1878.1 0.88 -0.9 1,811,951 + Xcc-8004.1878.1 0.88 +1.7 1,811,952 - Xcc-8004.1878.1 0.88 -0.8 1,811,952 - Xcc-8004.1878.1 0.88 -2.8 1,811,952 - Xcc-8004.1878.1 0.88 +0.9 1,811,952 - Xcc-8004.1878.1 0.88 -1.5 1,812,033 + +0.7 1,812,034 - +0.3 1,812,034 - -0.3 1,812,085 + -0.9 1,812,085 + +1.0 1,812,085 + +0.8 1,812,086 - -1.1 1,812,086 - +0.3 1,812,086 - -0.0 1,812,086 - +1.6 1,812,086 - +1.0 1,812,150 + +0.8 1,812,150 + +1.1 1,812,150 + +1.6 1,812,150 + +1.6 1,812,150 + +1.0 1,812,150 + +1.5 1,812,150 + +0.3 1,812,150 + +1.6 1,812,151 - -1.1 1,812,151 - -0.7 1,812,151 - -1.0 1,812,151 - -0.3 1,812,151 - -1.0 1,812,151 - +1.3 1,812,151 - +2.9 1,812,151 - -0.5 1,812,151 - -0.9 1,812,151 - -0.2 1,812,168 + +0.0 1,812,169 - -1.5 1,812,169 - +0.3 1,812,169 - -0.9 1,812,169 - +0.6 1,812,285 + Xcc-8004.1879.1 0.21 -0.4 1,812,285 + Xcc-8004.1879.1 0.21 -0.2 1,812,285 + Xcc-8004.1879.1 0.21 -1.5 1,812,285 + Xcc-8004.1879.1 0.21 -0.9 1,812,285 + Xcc-8004.1879.1 0.21 -1.0 1,812,285 + Xcc-8004.1879.1 0.21 +0.2 1,812,285 + Xcc-8004.1879.1 0.21 +0.3 1,812,286 - Xcc-8004.1879.1 0.22 -0.9 1,812,286 - Xcc-8004.1879.1 0.22 -0.3 1,812,286 - Xcc-8004.1879.1 0.22 +0.7 1,812,286 - Xcc-8004.1879.1 0.22 -1.0 1,812,286 - Xcc-8004.1879.1 0.22 +3.3 1,812,286 - Xcc-8004.1879.1 0.22 -0.4 1,812,286 - Xcc-8004.1879.1 0.22 -1.4 1,812,286 - Xcc-8004.1879.1 0.22 +0.1 1,812,286 - Xcc-8004.1879.1 0.22 +0.0 1,812,286 - Xcc-8004.1879.1 0.22 -0.8 1,812,286 - Xcc-8004.1879.1 0.22 -0.9 1,812,335 - Xcc-8004.1879.1 0.30 -1.0 1,812,576 + Xcc-8004.1879.1 0.72 +0.3 1,812,577 - Xcc-8004.1879.1 0.72 -2.0 1,812,648 - Xcc-8004.1879.1 0.85 -0.5 1,812,648 - Xcc-8004.1879.1 0.85 -1.0 1,812,666 + Xcc-8004.1879.1 0.88 -1.0 1,812,667 - Xcc-8004.1879.1 0.88 +0.1 1,812,667 - Xcc-8004.1879.1 0.88 -0.9 1,812,732 + +0.7 1,812,732 + -0.6 1,812,732 + -3.0 1,812,732 + +0.2 1,812,732 + -1.4 1,812,732 + -2.2 1,812,732 + +0.4 1,812,732 + -0.3 1,812,732 + +0.2 1,812,733 - -2.5 1,812,733 - -1.7 1,812,733 - -0.4 1,812,733 - -0.6 1,812,733 - -2.1 1,812,733 - -0.7 1,812,818 + -1.0 1,812,854 + -2.3 1,812,854 + -2.5 1,812,854 + -0.2 1,812,854 + -1.6 1,812,854 + -0.3 1,812,854 + +0.1 1,812,855 - -2.3 1,812,858 + -1.5 1,812,858 + -0.5 1,812,858 + +3.6 1,812,858 + -0.9 1,812,858 + -1.2 1,812,858 + -1.9 1,812,858 + +0.6 1,812,858 + +0.4 1,812,858 + +2.2 1,812,859 - -1.3 1,812,859 - -2.8 1,812,859 - -0.9 1,812,859 - +0.9
Or see this region's nucleotide sequence