Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1845.1 and Xcc-8004.1846.1 are separated by 370 nucleotides Xcc-8004.1846.1 and Xcc-8004.1847.1 are separated by 212 nucleotides Xcc-8004.1847.1 and Xcc-8004.1848.1 are separated by 26 nucleotides Xcc-8004.1848.1 and Xcc-8004.1849.1 are separated by 3 nucleotides
Xcc-8004.1845.1: Xcc-8004.1845.1 - Mobile element protein, at 1,779,066 to 1,781,783
Xcc-8004.1845.1
Xcc-8004.1846.1: Xcc-8004.1846.1 - hypothetical protein, at 1,782,154 to 1,782,249
Xcc-8004.1846.1
Xcc-8004.1847.1: Xcc-8004.1847.1 - FIG003003: hypothetical protein, at 1,782,462 to 1,783,457
Xcc-8004.1847.1
Xcc-8004.1848.1: Xcc-8004.1848.1 - Ribonuclease E inhibitor RraA, at 1,783,484 to 1,783,984
Xcc-8004.1848.1
Xcc-8004.1849.1: Xcc-8004.1849.1 - Beta-lactamase (EC 3.5.2.6), at 1,783,988 to 1,785,346
Xcc-8004.1849.1
Position (kb) 1782
1783
1784 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1781.529 kb on - strand at 1781.536 kb on + strand at 1781.536 kb on + strand at 1781.536 kb on + strand at 1781.536 kb on + strand at 1781.537 kb on - strand at 1781.582 kb on - strand at 1781.582 kb on - strand at 1781.614 kb on - strand at 1781.823 kb on - strand at 1781.858 kb on + strand at 1781.920 kb on - strand at 1781.992 kb on - strand at 1781.992 kb on - strand at 1782.002 kb on + strand at 1782.003 kb on - strand at 1782.135 kb on + strand at 1782.135 kb on + strand at 1782.136 kb on - strand at 1782.136 kb on - strand at 1782.136 kb on - strand at 1782.426 kb on + strand at 1782.700 kb on + strand, within Xcc-8004.1847.1 at 1782.700 kb on + strand, within Xcc-8004.1847.1 at 1782.700 kb on + strand, within Xcc-8004.1847.1 at 1782.701 kb on - strand, within Xcc-8004.1847.1 at 1782.701 kb on - strand, within Xcc-8004.1847.1 at 1782.701 kb on - strand, within Xcc-8004.1847.1 at 1782.840 kb on + strand, within Xcc-8004.1847.1 at 1783.025 kb on + strand, within Xcc-8004.1847.1 at 1783.025 kb on + strand, within Xcc-8004.1847.1 at 1783.026 kb on - strand, within Xcc-8004.1847.1 at 1783.087 kb on + strand, within Xcc-8004.1847.1 at 1783.088 kb on - strand, within Xcc-8004.1847.1 at 1783.111 kb on + strand, within Xcc-8004.1847.1 at 1783.112 kb on - strand, within Xcc-8004.1847.1 at 1783.112 kb on - strand, within Xcc-8004.1847.1 at 1783.112 kb on - strand, within Xcc-8004.1847.1 at 1783.114 kb on + strand, within Xcc-8004.1847.1 at 1783.114 kb on + strand, within Xcc-8004.1847.1 at 1783.114 kb on + strand, within Xcc-8004.1847.1 at 1783.115 kb on - strand, within Xcc-8004.1847.1 at 1783.115 kb on - strand, within Xcc-8004.1847.1 at 1783.115 kb on - strand, within Xcc-8004.1847.1 at 1783.156 kb on + strand, within Xcc-8004.1847.1 at 1783.157 kb on - strand, within Xcc-8004.1847.1 at 1783.192 kb on + strand, within Xcc-8004.1847.1 at 1783.219 kb on + strand, within Xcc-8004.1847.1 at 1783.220 kb on - strand, within Xcc-8004.1847.1 at 1783.220 kb on - strand, within Xcc-8004.1847.1 at 1783.220 kb on - strand, within Xcc-8004.1847.1 at 1783.220 kb on - strand, within Xcc-8004.1847.1 at 1783.364 kb on + strand at 1783.365 kb on - strand at 1783.913 kb on + strand, within Xcc-8004.1848.1 at 1783.913 kb on + strand, within Xcc-8004.1848.1 at 1783.913 kb on + strand, within Xcc-8004.1848.1 at 1783.914 kb on - strand, within Xcc-8004.1848.1 at 1784.213 kb on + strand, within Xcc-8004.1849.1 at 1784.213 kb on + strand, within Xcc-8004.1849.1 at 1784.390 kb on + strand, within Xcc-8004.1849.1 at 1784.390 kb on + strand, within Xcc-8004.1849.1 at 1784.391 kb on - strand, within Xcc-8004.1849.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 1,781,529 - +1.8 1,781,536 + +0.3 1,781,536 + -0.4 1,781,536 + -0.6 1,781,536 + +0.7 1,781,537 - -0.3 1,781,582 - -0.2 1,781,582 - -1.4 1,781,614 - -1.0 1,781,823 - -0.3 1,781,858 + +1.5 1,781,920 - +0.2 1,781,992 - -1.2 1,781,992 - +1.0 1,782,002 + +1.2 1,782,003 - -0.2 1,782,135 + +0.5 1,782,135 + +0.0 1,782,136 - -2.5 1,782,136 - -0.6 1,782,136 - -2.6 1,782,426 + -1.4 1,782,700 + Xcc-8004.1847.1 0.24 +0.3 1,782,700 + Xcc-8004.1847.1 0.24 -0.2 1,782,700 + Xcc-8004.1847.1 0.24 +0.4 1,782,701 - Xcc-8004.1847.1 0.24 -0.6 1,782,701 - Xcc-8004.1847.1 0.24 -1.2 1,782,701 - Xcc-8004.1847.1 0.24 -0.6 1,782,840 + Xcc-8004.1847.1 0.38 +0.7 1,783,025 + Xcc-8004.1847.1 0.57 -0.3 1,783,025 + Xcc-8004.1847.1 0.57 +1.5 1,783,026 - Xcc-8004.1847.1 0.57 +0.9 1,783,087 + Xcc-8004.1847.1 0.63 -0.0 1,783,088 - Xcc-8004.1847.1 0.63 +0.7 1,783,111 + Xcc-8004.1847.1 0.65 +0.6 1,783,112 - Xcc-8004.1847.1 0.65 +0.7 1,783,112 - Xcc-8004.1847.1 0.65 +0.5 1,783,112 - Xcc-8004.1847.1 0.65 +0.9 1,783,114 + Xcc-8004.1847.1 0.65 -0.4 1,783,114 + Xcc-8004.1847.1 0.65 +0.6 1,783,114 + Xcc-8004.1847.1 0.65 -0.4 1,783,115 - Xcc-8004.1847.1 0.66 +0.4 1,783,115 - Xcc-8004.1847.1 0.66 +0.2 1,783,115 - Xcc-8004.1847.1 0.66 -0.6 1,783,156 + Xcc-8004.1847.1 0.70 -0.4 1,783,157 - Xcc-8004.1847.1 0.70 -1.0 1,783,192 + Xcc-8004.1847.1 0.73 +0.4 1,783,219 + Xcc-8004.1847.1 0.76 -0.7 1,783,220 - Xcc-8004.1847.1 0.76 +0.4 1,783,220 - Xcc-8004.1847.1 0.76 +1.0 1,783,220 - Xcc-8004.1847.1 0.76 -0.4 1,783,220 - Xcc-8004.1847.1 0.76 +0.1 1,783,364 + +1.0 1,783,365 - +0.3 1,783,913 + Xcc-8004.1848.1 0.86 +1.3 1,783,913 + Xcc-8004.1848.1 0.86 +0.8 1,783,913 + Xcc-8004.1848.1 0.86 -0.1 1,783,914 - Xcc-8004.1848.1 0.86 +0.6 1,784,213 + Xcc-8004.1849.1 0.17 -0.0 1,784,213 + Xcc-8004.1849.1 0.17 -0.0 1,784,390 + Xcc-8004.1849.1 0.30 +0.3 1,784,390 + Xcc-8004.1849.1 0.30 -0.3 1,784,391 - Xcc-8004.1849.1 0.30 +0.2
Or see this region's nucleotide sequence