Experiment: marine broth 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3999 and Dshi_4000 are separated by 124 nucleotides Dshi_4000 and Dshi_4001 are separated by 100 nucleotides Dshi_4001 and Dshi_4002 are separated by 1 nucleotides Dshi_4002 and Dshi_4003 are separated by 121 nucleotides
Dshi_3999: Dshi_3999 - ParB-like nuclease (RefSeq), at 63,705 to 64,433
_3999
Dshi_4000: Dshi_4000 - hypothetical protein (RefSeq), at 64,558 to 64,860
_4000
Dshi_4001: Dshi_4001 - hypothetical protein (RefSeq), at 64,961 to 65,422
_4001
Dshi_4002: Dshi_4002 - hypothetical protein (RefSeq), at 65,424 to 65,810
_4002
Dshi_4003: Dshi_4003 - hypothetical protein (RefSeq), at 65,932 to 67,803
_4003
Position (kb) 65
66 Strain fitness (log2 ratio) -1
0
1
2 at 64.633 kb on - strand, within Dshi_4000 at 64.694 kb on - strand, within Dshi_4000 at 64.761 kb on + strand, within Dshi_4000 at 64.807 kb on - strand, within Dshi_4000 at 64.838 kb on + strand at 64.846 kb on - strand at 65.056 kb on + strand, within Dshi_4001 at 65.056 kb on + strand, within Dshi_4001 at 65.064 kb on - strand, within Dshi_4001 at 65.086 kb on + strand, within Dshi_4001 at 65.134 kb on + strand, within Dshi_4001 at 65.148 kb on + strand, within Dshi_4001 at 65.239 kb on + strand, within Dshi_4001 at 65.239 kb on - strand, within Dshi_4001 at 65.281 kb on - strand, within Dshi_4001 at 65.309 kb on - strand, within Dshi_4001 at 65.360 kb on - strand, within Dshi_4001 at 65.443 kb on - strand at 65.466 kb on - strand, within Dshi_4002 at 65.466 kb on - strand, within Dshi_4002 at 65.618 kb on + strand, within Dshi_4002 at 65.696 kb on + strand, within Dshi_4002 at 65.761 kb on + strand, within Dshi_4002 at 65.766 kb on + strand, within Dshi_4002 at 65.813 kb on - strand at 65.884 kb on + strand at 65.958 kb on - strand at 66.069 kb on + strand at 66.093 kb on + strand at 66.116 kb on - strand at 66.133 kb on - strand, within Dshi_4003 at 66.324 kb on + strand, within Dshi_4003 at 66.382 kb on + strand, within Dshi_4003 at 66.425 kb on + strand, within Dshi_4003 at 66.428 kb on - strand, within Dshi_4003 at 66.611 kb on + strand, within Dshi_4003 at 66.684 kb on + strand, within Dshi_4003 at 66.721 kb on + strand, within Dshi_4003 at 66.721 kb on + strand, within Dshi_4003 at 66.730 kb on - strand, within Dshi_4003 at 66.783 kb on + strand, within Dshi_4003
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth 20C remove 64,633 - Dshi_4000 0.25 +1.5 64,694 - Dshi_4000 0.45 +0.1 64,761 + Dshi_4000 0.67 -0.4 64,807 - Dshi_4000 0.82 -1.2 64,838 + +1.5 64,846 - -0.3 65,056 + Dshi_4001 0.21 +2.3 65,056 + Dshi_4001 0.21 +1.0 65,064 - Dshi_4001 0.22 +0.6 65,086 + Dshi_4001 0.27 -0.3 65,134 + Dshi_4001 0.37 +2.3 65,148 + Dshi_4001 0.40 +1.1 65,239 + Dshi_4001 0.60 -0.3 65,239 - Dshi_4001 0.60 -0.1 65,281 - Dshi_4001 0.69 +1.0 65,309 - Dshi_4001 0.75 +0.3 65,360 - Dshi_4001 0.86 -0.6 65,443 - +1.5 65,466 - Dshi_4002 0.11 +0.7 65,466 - Dshi_4002 0.11 +0.1 65,618 + Dshi_4002 0.50 +0.9 65,696 + Dshi_4002 0.70 +0.9 65,761 + Dshi_4002 0.87 +0.3 65,766 + Dshi_4002 0.88 +1.5 65,813 - +0.6 65,884 + +0.3 65,958 - +0.6 66,069 + +0.1 66,093 + -0.5 66,116 - +0.3 66,133 - Dshi_4003 0.11 -0.8 66,324 + Dshi_4003 0.21 -0.5 66,382 + Dshi_4003 0.24 +0.2 66,425 + Dshi_4003 0.26 -0.7 66,428 - Dshi_4003 0.26 +0.1 66,611 + Dshi_4003 0.36 +0.2 66,684 + Dshi_4003 0.40 -0.2 66,721 + Dshi_4003 0.42 +0.4 66,721 + Dshi_4003 0.42 -0.1 66,730 - Dshi_4003 0.43 +1.1 66,783 + Dshi_4003 0.45 +1.0
Or see this region's nucleotide sequence