Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3657

Experiment: marine broth 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3656 and Dshi_3657 overlap by 14 nucleotidesDshi_3657 and Dshi_3658 are separated by 563 nucleotidesDshi_3658 and Dshi_3659 are separated by 200 nucleotides Dshi_3656: Dshi_3656 - Relaxase/mobilization nuclease family protein (RefSeq), at 57,373 to 59,706 _3656 Dshi_3657: Dshi_3657 - transposase IS3/IS911 family protein (RefSeq), at 59,693 to 60,274 _3657 Dshi_3658: Dshi_3658 - hypothetical protein (RefSeq), at 60,838 to 61,044 _3658 Dshi_3659: Dshi_3659 - hypothetical protein (RefSeq), at 61,245 to 61,547 _3659 Position (kb) 59 60 61Strain fitness (log2 ratio) -1 0 1 2at 58.695 kb on + strand, within Dshi_3656at 58.735 kb on - strand, within Dshi_3656at 58.796 kb on + strand, within Dshi_3656at 59.023 kb on - strand, within Dshi_3656at 59.028 kb on - strand, within Dshi_3656at 59.047 kb on - strand, within Dshi_3656at 59.312 kb on + strand, within Dshi_3656at 59.312 kb on + strand, within Dshi_3656at 59.312 kb on + strand, within Dshi_3656at 59.347 kb on + strand, within Dshi_3656at 59.369 kb on - strand, within Dshi_3656at 59.369 kb on - strand, within Dshi_3656at 59.374 kb on - strand, within Dshi_3656at 59.417 kb on + strand, within Dshi_3656at 59.418 kb on - strand, within Dshi_3656at 59.430 kb on - strand, within Dshi_3656at 59.432 kb on + strand, within Dshi_3656at 59.535 kb on + strandat 59.546 kb on + strandat 59.555 kb on + strandat 59.563 kb on - strandat 59.563 kb on - strandat 59.591 kb on + strandat 59.605 kb on - strandat 59.654 kb on - strandat 59.681 kb on + strandat 59.714 kb on + strandat 59.716 kb on + strandat 59.866 kb on - strand, within Dshi_3657at 59.871 kb on + strand, within Dshi_3657at 59.879 kb on - strand, within Dshi_3657at 59.888 kb on - strand, within Dshi_3657at 60.034 kb on - strand, within Dshi_3657at 60.044 kb on + strand, within Dshi_3657at 60.047 kb on - strand, within Dshi_3657at 60.085 kb on + strand, within Dshi_3657at 60.093 kb on - strand, within Dshi_3657at 60.093 kb on - strand, within Dshi_3657at 60.093 kb on - strand, within Dshi_3657at 60.217 kb on - strandat 60.231 kb on + strandat 60.233 kb on + strandat 60.250 kb on - strandat 60.300 kb on - strandat 60.308 kb on + strandat 60.311 kb on - strandat 60.384 kb on + strandat 60.392 kb on - strandat 60.392 kb on - strandat 60.409 kb on + strandat 60.432 kb on + strandat 60.449 kb on + strandat 60.465 kb on - strandat 60.502 kb on + strandat 60.566 kb on + strandat 60.573 kb on - strandat 60.573 kb on - strandat 60.574 kb on - strandat 60.673 kb on + strandat 60.734 kb on - strandat 60.738 kb on + strandat 60.921 kb on + strand, within Dshi_3658at 60.979 kb on + strand, within Dshi_3658at 61.006 kb on - strand, within Dshi_3658at 61.083 kb on - strandat 61.120 kb on + strandat 61.178 kb on + strandat 61.184 kb on + strandat 61.189 kb on + strandat 61.238 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth 20C
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58,695 + Dshi_3656 0.57 +0.1
58,735 - Dshi_3656 0.58 -0.6
58,796 + Dshi_3656 0.61 -1.0
59,023 - Dshi_3656 0.71 +0.4
59,028 - Dshi_3656 0.71 +0.5
59,047 - Dshi_3656 0.72 +0.0
59,312 + Dshi_3656 0.83 +0.7
59,312 + Dshi_3656 0.83 -1.1
59,312 + Dshi_3656 0.83 -1.1
59,347 + Dshi_3656 0.85 -0.4
59,369 - Dshi_3656 0.86 -0.3
59,369 - Dshi_3656 0.86 -0.1
59,374 - Dshi_3656 0.86 -0.3
59,417 + Dshi_3656 0.88 +0.8
59,418 - Dshi_3656 0.88 -0.2
59,430 - Dshi_3656 0.88 +0.3
59,432 + Dshi_3656 0.88 +0.9
59,535 + +0.4
59,546 + +1.0
59,555 + -0.9
59,563 - +0.3
59,563 - +0.8
59,591 + +1.0
59,605 - -0.4
59,654 - +1.2
59,681 + -0.1
59,714 + +0.9
59,716 + +0.4
59,866 - Dshi_3657 0.30 +0.3
59,871 + Dshi_3657 0.31 -0.1
59,879 - Dshi_3657 0.32 +2.3
59,888 - Dshi_3657 0.34 +0.3
60,034 - Dshi_3657 0.59 +0.3
60,044 + Dshi_3657 0.60 -0.6
60,047 - Dshi_3657 0.61 -0.0
60,085 + Dshi_3657 0.67 +0.7
60,093 - Dshi_3657 0.69 -1.1
60,093 - Dshi_3657 0.69 +0.9
60,093 - Dshi_3657 0.69 -0.9
60,217 - +0.2
60,231 + +0.4
60,233 + -1.4
60,250 - -1.7
60,300 - -0.6
60,308 + -0.3
60,311 - +0.3
60,384 + +0.3
60,392 - -0.1
60,392 - +0.3
60,409 + +0.2
60,432 + +0.2
60,449 + -0.1
60,465 - +0.1
60,502 + -0.4
60,566 + -0.0
60,573 - +0.1
60,573 - -0.1
60,574 - +0.6
60,673 + +1.1
60,734 - -0.5
60,738 + +0.7
60,921 + Dshi_3658 0.40 +0.2
60,979 + Dshi_3658 0.68 -0.2
61,006 - Dshi_3658 0.81 -0.3
61,083 - -0.5
61,120 + +0.2
61,178 + -0.3
61,184 + +0.3
61,189 + +0.7
61,238 - +0.1

Or see this region's nucleotide sequence