Experiment: marine broth 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2771 and Dshi_2772 are separated by 146 nucleotides Dshi_2772 and Dshi_2773 overlap by 4 nucleotides
Dshi_2771: Dshi_2771 - Guanine deaminase (RefSeq), at 2,933,279 to 2,934,565
_2771
Dshi_2772: Dshi_2772 - SCP-like extracellular (RefSeq), at 2,934,712 to 2,935,170
_2772
Dshi_2773: Dshi_2773 - amidohydrolase (RefSeq), at 2,935,167 to 2,936,507
_2773
Position (kb)
2934
2935
2936 Strain fitness (log2 ratio)
-1
0
1 at 2933.810 kb on + strand, within Dshi_2771 at 2933.889 kb on + strand, within Dshi_2771 at 2933.952 kb on + strand, within Dshi_2771 at 2933.960 kb on - strand, within Dshi_2771 at 2933.978 kb on - strand, within Dshi_2771 at 2934.000 kb on - strand, within Dshi_2771 at 2934.005 kb on - strand, within Dshi_2771 at 2934.040 kb on - strand, within Dshi_2771 at 2934.097 kb on - strand, within Dshi_2771 at 2934.116 kb on - strand, within Dshi_2771 at 2934.137 kb on + strand, within Dshi_2771 at 2934.137 kb on + strand, within Dshi_2771 at 2934.163 kb on - strand, within Dshi_2771 at 2934.182 kb on - strand, within Dshi_2771 at 2934.182 kb on - strand, within Dshi_2771 at 2934.216 kb on + strand, within Dshi_2771 at 2934.265 kb on + strand, within Dshi_2771 at 2934.278 kb on - strand, within Dshi_2771 at 2934.311 kb on + strand, within Dshi_2771 at 2934.313 kb on + strand, within Dshi_2771 at 2934.433 kb on + strand, within Dshi_2771 at 2934.556 kb on + strand at 2934.609 kb on - strand at 2934.688 kb on + strand at 2934.727 kb on - strand at 2934.780 kb on + strand, within Dshi_2772 at 2934.921 kb on + strand, within Dshi_2772 at 2934.990 kb on - strand, within Dshi_2772 at 2934.990 kb on - strand, within Dshi_2772 at 2935.338 kb on + strand, within Dshi_2773 at 2935.368 kb on - strand, within Dshi_2773 at 2935.648 kb on - strand, within Dshi_2773 at 2935.737 kb on + strand, within Dshi_2773 at 2935.740 kb on - strand, within Dshi_2773 at 2935.740 kb on - strand, within Dshi_2773 at 2935.745 kb on - strand, within Dshi_2773 at 2935.856 kb on - strand, within Dshi_2773 at 2935.882 kb on - strand, within Dshi_2773 at 2935.889 kb on + strand, within Dshi_2773 at 2935.910 kb on + strand, within Dshi_2773 at 2935.917 kb on - strand, within Dshi_2773 at 2935.917 kb on - strand, within Dshi_2773 at 2936.123 kb on + strand, within Dshi_2773
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth 20C remove 2,933,810 + Dshi_2771 0.41 +0.7 2,933,889 + Dshi_2771 0.47 -0.2 2,933,952 + Dshi_2771 0.52 -0.4 2,933,960 - Dshi_2771 0.53 +1.4 2,933,978 - Dshi_2771 0.54 +0.1 2,934,000 - Dshi_2771 0.56 -0.2 2,934,005 - Dshi_2771 0.56 +0.6 2,934,040 - Dshi_2771 0.59 +0.5 2,934,097 - Dshi_2771 0.64 -0.2 2,934,116 - Dshi_2771 0.65 +0.1 2,934,137 + Dshi_2771 0.67 -0.2 2,934,137 + Dshi_2771 0.67 -1.0 2,934,163 - Dshi_2771 0.69 +0.6 2,934,182 - Dshi_2771 0.70 +0.7 2,934,182 - Dshi_2771 0.70 -0.4 2,934,216 + Dshi_2771 0.73 +0.1 2,934,265 + Dshi_2771 0.77 -1.2 2,934,278 - Dshi_2771 0.78 -0.2 2,934,311 + Dshi_2771 0.80 -0.4 2,934,313 + Dshi_2771 0.80 -0.0 2,934,433 + Dshi_2771 0.90 -0.3 2,934,556 + -0.2 2,934,609 - -0.6 2,934,688 + -1.2 2,934,727 - -0.5 2,934,780 + Dshi_2772 0.15 +0.2 2,934,921 + Dshi_2772 0.46 +0.9 2,934,990 - Dshi_2772 0.61 +0.4 2,934,990 - Dshi_2772 0.61 +0.6 2,935,338 + Dshi_2773 0.13 +0.2 2,935,368 - Dshi_2773 0.15 -0.1 2,935,648 - Dshi_2773 0.36 -0.1 2,935,737 + Dshi_2773 0.43 -0.3 2,935,740 - Dshi_2773 0.43 -0.0 2,935,740 - Dshi_2773 0.43 -0.0 2,935,745 - Dshi_2773 0.43 +0.4 2,935,856 - Dshi_2773 0.51 +0.1 2,935,882 - Dshi_2773 0.53 +0.6 2,935,889 + Dshi_2773 0.54 +0.6 2,935,910 + Dshi_2773 0.55 -0.0 2,935,917 - Dshi_2773 0.56 +0.5 2,935,917 - Dshi_2773 0.56 -0.9 2,936,123 + Dshi_2773 0.71 +0.6
Or see this region's nucleotide sequence