Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2399

Experiment: MoLS4 with L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2397 and DVU2398 are separated by 206 nucleotidesDVU2398 and DVU2399 are separated by 257 nucleotidesDVU2399 and DVU2400 overlap by 8 nucleotides DVU2397: DVU2397 - hypothetical protein (TIGR), at 2,501,252 to 2,501,995 DVU2397 DVU2398: DVU2398 - conserved hypothetical protein (TIGR), at 2,502,202 to 2,502,693 DVU2398 DVU2399: DVU2399 - hydrogenase, putative (TIGR), at 2,502,951 to 2,503,838 DVU2399 DVU2400: DVU2400 - hydrogenase, putative (TIGR), at 2,503,831 to 2,504,913 DVU2400 Position (kb) 2502 2503 2504Strain fitness (log2 ratio) -3 -2 -1 0 1at 2502.140 kb on - strandat 2502.254 kb on - strand, within DVU2398at 2502.268 kb on - strand, within DVU2398at 2502.285 kb on - strand, within DVU2398at 2502.325 kb on + strand, within DVU2398at 2502.410 kb on + strand, within DVU2398at 2502.425 kb on + strand, within DVU2398at 2502.512 kb on - strand, within DVU2398at 2502.542 kb on + strand, within DVU2398at 2502.613 kb on - strand, within DVU2398at 2502.624 kb on + strand, within DVU2398at 2502.624 kb on + strand, within DVU2398at 2502.656 kb on + strandat 2502.689 kb on + strandat 2502.745 kb on - strandat 2502.779 kb on + strandat 2502.866 kb on - strandat 2502.932 kb on + strandat 2502.937 kb on + strandat 2502.937 kb on + strandat 2502.945 kb on - strandat 2502.945 kb on - strandat 2502.980 kb on + strandat 2502.995 kb on - strandat 2502.995 kb on - strandat 2502.995 kb on - strandat 2503.081 kb on + strand, within DVU2399at 2503.177 kb on + strand, within DVU2399at 2503.185 kb on - strand, within DVU2399at 2503.330 kb on - strand, within DVU2399at 2503.330 kb on - strand, within DVU2399at 2503.347 kb on - strand, within DVU2399at 2503.347 kb on - strand, within DVU2399at 2503.349 kb on + strand, within DVU2399at 2503.349 kb on + strand, within DVU2399at 2503.374 kb on + strand, within DVU2399at 2503.725 kb on + strand, within DVU2399at 2503.735 kb on + strand, within DVU2399at 2503.735 kb on + strand, within DVU2399at 2503.735 kb on + strand, within DVU2399at 2503.743 kb on - strand, within DVU2399at 2503.771 kb on - strandat 2503.781 kb on + strandat 2504.030 kb on - strand, within DVU2400at 2504.058 kb on + strand, within DVU2400at 2504.267 kb on - strand, within DVU2400at 2504.452 kb on + strand, within DVU2400at 2504.491 kb on - strand, within DVU2400at 2504.545 kb on - strand, within DVU2400at 2504.668 kb on + strand, within DVU2400at 2504.676 kb on - strand, within DVU2400at 2504.759 kb on - strand, within DVU2400

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Lysine (N)
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2,502,140 - +1.7
2,502,254 - DVU2398 0.11 -0.7
2,502,268 - DVU2398 0.13 -0.3
2,502,285 - DVU2398 0.17 -0.2
2,502,325 + DVU2398 0.25 +0.1
2,502,410 + DVU2398 0.42 -1.8
2,502,425 + DVU2398 0.45 -0.5
2,502,512 - DVU2398 0.63 +0.1
2,502,542 + DVU2398 0.69 +0.5
2,502,613 - DVU2398 0.84 -0.5
2,502,624 + DVU2398 0.86 -0.1
2,502,624 + DVU2398 0.86 -0.0
2,502,656 + -0.8
2,502,689 + -0.5
2,502,745 - -0.7
2,502,779 + -0.1
2,502,866 - -0.7
2,502,932 + -1.3
2,502,937 + -0.9
2,502,937 + -1.2
2,502,945 - +0.6
2,502,945 - -0.6
2,502,980 + -1.0
2,502,995 - -1.2
2,502,995 - -1.3
2,502,995 - +0.1
2,503,081 + DVU2399 0.15 -2.4
2,503,177 + DVU2399 0.25 -2.4
2,503,185 - DVU2399 0.26 -2.2
2,503,330 - DVU2399 0.43 -2.1
2,503,330 - DVU2399 0.43 +0.1
2,503,347 - DVU2399 0.45 +0.4
2,503,347 - DVU2399 0.45 -2.1
2,503,349 + DVU2399 0.45 -3.2
2,503,349 + DVU2399 0.45 -1.2
2,503,374 + DVU2399 0.48 -2.7
2,503,725 + DVU2399 0.87 -0.3
2,503,735 + DVU2399 0.88 -1.1
2,503,735 + DVU2399 0.88 -0.9
2,503,735 + DVU2399 0.88 -1.7
2,503,743 - DVU2399 0.89 -1.3
2,503,771 - -2.2
2,503,781 + +1.4
2,504,030 - DVU2400 0.18 -2.1
2,504,058 + DVU2400 0.21 -1.9
2,504,267 - DVU2400 0.40 -1.0
2,504,452 + DVU2400 0.57 -0.8
2,504,491 - DVU2400 0.61 -2.7
2,504,545 - DVU2400 0.66 -2.2
2,504,668 + DVU2400 0.77 -2.0
2,504,676 - DVU2400 0.78 +0.1
2,504,759 - DVU2400 0.86 -1.6

Or see this region's nucleotide sequence