Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3320

Experiment: Succinate (C)_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3318 and Rru_A3319 are separated by 149 nucleotidesRru_A3319 and Rru_A3320 are separated by 115 nucleotidesRru_A3320 and Rru_A3321 are separated by 19 nucleotides Rru_A3318: Rru_A3318 - Gamma-glutamyltransferase (NCBI), at 3,827,625 to 3,829,229 _A3318 Rru_A3319: Rru_A3319 - Xanthine-guanine phosphoribosyltransferase (NCBI), at 3,829,379 to 3,829,936 _A3319 Rru_A3320: Rru_A3320 - Cytidyltransferase-related (NCBI), at 3,830,052 to 3,830,924 _A3320 Rru_A3321: Rru_A3321 - 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI), at 3,830,944 to 3,831,780 _A3321 Position (kb) 3830 3831Strain fitness (log2 ratio) -1 0 1at 3829.079 kb on + strandat 3829.079 kb on + strandat 3829.079 kb on + strandat 3829.080 kb on - strandat 3829.087 kb on + strandat 3829.087 kb on + strandat 3829.269 kb on + strandat 3829.269 kb on + strandat 3829.269 kb on + strandat 3829.270 kb on - strandat 3829.271 kb on + strandat 3829.272 kb on - strandat 3829.272 kb on - strandat 3829.329 kb on + strandat 3829.366 kb on + strandat 3829.366 kb on + strandat 3831.904 kb on + strandat 3831.904 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinate (C)_noKan
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3,829,079 + -0.5
3,829,079 + +0.3
3,829,079 + +0.2
3,829,080 - -0.5
3,829,087 + -1.1
3,829,087 + -0.1
3,829,269 + -0.5
3,829,269 + +0.1
3,829,269 + +1.2
3,829,270 - -0.0
3,829,271 + +1.2
3,829,272 - +0.1
3,829,272 - -0.2
3,829,329 + -1.4
3,829,366 + +0.7
3,829,366 + -0.7
3,831,904 + +1.0
3,831,904 + +0.2

Or see this region's nucleotide sequence