Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2531

Experiment: Succinate (C)_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2529 and Rru_A2530 are separated by 18 nucleotidesRru_A2530 and Rru_A2531 overlap by 4 nucleotidesRru_A2531 and flgE are separated by 11 nucleotides Rru_A2529: Rru_A2529 - Protein of unknown function DUF1078 (NCBI), at 2,943,461 to 2,944,819 _A2529 Rru_A2530: Rru_A2530 - hypothetical protein (NCBI), at 2,944,838 to 2,945,350 _A2530 Rru_A2531: Rru_A2531 - hypothetical protein (NCBI), at 2,945,347 to 2,945,634 _A2531 Rru_A2532: flgE - flagellar hook protein FlgE (RefSeq), at 2,945,646 to 2,947,028 flgE Position (kb) 2945 2946Strain fitness (log2 ratio) -2 -1 0 1at 2944.388 kb on - strand, within Rru_A2529at 2944.388 kb on - strand, within Rru_A2529at 2944.533 kb on + strand, within Rru_A2529at 2944.533 kb on + strand, within Rru_A2529at 2944.533 kb on + strand, within Rru_A2529at 2944.533 kb on + strand, within Rru_A2529at 2944.533 kb on + strand, within Rru_A2529at 2944.534 kb on - strand, within Rru_A2529at 2944.534 kb on - strand, within Rru_A2529at 2944.534 kb on - strand, within Rru_A2529at 2944.534 kb on - strand, within Rru_A2529at 2944.534 kb on - strand, within Rru_A2529at 2944.557 kb on + strand, within Rru_A2529at 2944.557 kb on + strand, within Rru_A2529at 2944.557 kb on + strand, within Rru_A2529at 2944.557 kb on + strand, within Rru_A2529at 2944.557 kb on + strand, within Rru_A2529at 2944.557 kb on + strand, within Rru_A2529at 2944.557 kb on + strand, within Rru_A2529at 2944.558 kb on - strand, within Rru_A2529at 2944.558 kb on - strand, within Rru_A2529at 2944.558 kb on - strand, within Rru_A2529at 2944.558 kb on - strand, within Rru_A2529at 2944.558 kb on - strand, within Rru_A2529at 2944.579 kb on - strand, within Rru_A2529at 2944.677 kb on + strand, within Rru_A2529at 2944.677 kb on + strand, within Rru_A2529at 2944.677 kb on + strand, within Rru_A2529at 2944.678 kb on - strand, within Rru_A2529at 2944.678 kb on - strand, within Rru_A2529at 2944.678 kb on - strand, within Rru_A2529at 2944.688 kb on - strandat 2944.839 kb on + strandat 2944.840 kb on - strandat 2944.840 kb on - strandat 2945.062 kb on - strand, within Rru_A2530at 2945.109 kb on + strand, within Rru_A2530at 2945.155 kb on - strand, within Rru_A2530at 2945.155 kb on - strand, within Rru_A2530at 2945.272 kb on + strand, within Rru_A2530at 2945.272 kb on + strand, within Rru_A2530at 2945.273 kb on - strand, within Rru_A2530at 2945.273 kb on - strand, within Rru_A2530at 2945.273 kb on - strand, within Rru_A2530at 2945.273 kb on - strand, within Rru_A2530at 2945.273 kb on - strand, within Rru_A2530at 2945.273 kb on - strand, within Rru_A2530at 2945.273 kb on - strand, within Rru_A2530at 2945.273 kb on - strand, within Rru_A2530at 2945.273 kb on - strand, within Rru_A2530at 2945.273 kb on - strand, within Rru_A2530at 2945.275 kb on - strand, within Rru_A2530at 2945.397 kb on - strand, within Rru_A2531at 2945.397 kb on - strand, within Rru_A2531at 2945.558 kb on - strand, within Rru_A2531at 2945.558 kb on - strand, within Rru_A2531at 2945.648 kb on - strandat 2945.717 kb on - strandat 2945.828 kb on - strand, within flgEat 2945.828 kb on - strand, within flgEat 2945.828 kb on - strand, within flgEat 2945.924 kb on - strand, within flgEat 2945.924 kb on - strand, within flgEat 2945.960 kb on - strand, within flgEat 2945.960 kb on - strand, within flgEat 2945.996 kb on - strand, within flgEat 2945.996 kb on - strand, within flgEat 2945.996 kb on - strand, within flgEat 2945.996 kb on - strand, within flgEat 2946.005 kb on - strand, within flgEat 2946.069 kb on - strand, within flgEat 2946.069 kb on - strand, within flgEat 2946.074 kb on - strand, within flgEat 2946.132 kb on - strand, within flgEat 2946.234 kb on - strand, within flgEat 2946.350 kb on - strand, within flgEat 2946.452 kb on + strand, within flgEat 2946.454 kb on + strand, within flgE

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinate (C)_noKan
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2,944,388 - Rru_A2529 0.68 -0.6
2,944,388 - Rru_A2529 0.68 -0.8
2,944,533 + Rru_A2529 0.79 -0.7
2,944,533 + Rru_A2529 0.79 -0.9
2,944,533 + Rru_A2529 0.79 +0.0
2,944,533 + Rru_A2529 0.79 -1.2
2,944,533 + Rru_A2529 0.79 -0.5
2,944,534 - Rru_A2529 0.79 -0.5
2,944,534 - Rru_A2529 0.79 -1.5
2,944,534 - Rru_A2529 0.79 +0.5
2,944,534 - Rru_A2529 0.79 +0.1
2,944,534 - Rru_A2529 0.79 -1.0
2,944,557 + Rru_A2529 0.81 -0.3
2,944,557 + Rru_A2529 0.81 +0.9
2,944,557 + Rru_A2529 0.81 -0.5
2,944,557 + Rru_A2529 0.81 -0.2
2,944,557 + Rru_A2529 0.81 +0.1
2,944,557 + Rru_A2529 0.81 -0.3
2,944,557 + Rru_A2529 0.81 -0.2
2,944,558 - Rru_A2529 0.81 -0.4
2,944,558 - Rru_A2529 0.81 -0.5
2,944,558 - Rru_A2529 0.81 +1.0
2,944,558 - Rru_A2529 0.81 -1.3
2,944,558 - Rru_A2529 0.81 +0.3
2,944,579 - Rru_A2529 0.82 +0.5
2,944,677 + Rru_A2529 0.89 +0.7
2,944,677 + Rru_A2529 0.89 -0.4
2,944,677 + Rru_A2529 0.89 -0.0
2,944,678 - Rru_A2529 0.90 -0.6
2,944,678 - Rru_A2529 0.90 -0.4
2,944,678 - Rru_A2529 0.90 +0.1
2,944,688 - +0.1
2,944,839 + +0.2
2,944,840 - -0.4
2,944,840 - -1.5
2,945,062 - Rru_A2530 0.44 -1.4
2,945,109 + Rru_A2530 0.53 -1.6
2,945,155 - Rru_A2530 0.62 +0.0
2,945,155 - Rru_A2530 0.62 -0.8
2,945,272 + Rru_A2530 0.85 -0.1
2,945,272 + Rru_A2530 0.85 +0.1
2,945,273 - Rru_A2530 0.85 -1.0
2,945,273 - Rru_A2530 0.85 -0.9
2,945,273 - Rru_A2530 0.85 -0.5
2,945,273 - Rru_A2530 0.85 -0.2
2,945,273 - Rru_A2530 0.85 -0.8
2,945,273 - Rru_A2530 0.85 -0.9
2,945,273 - Rru_A2530 0.85 +0.8
2,945,273 - Rru_A2530 0.85 -1.4
2,945,273 - Rru_A2530 0.85 -1.2
2,945,273 - Rru_A2530 0.85 -1.1
2,945,275 - Rru_A2530 0.85 -0.9
2,945,397 - Rru_A2531 0.17 +0.4
2,945,397 - Rru_A2531 0.17 -0.1
2,945,558 - Rru_A2531 0.73 +0.2
2,945,558 - Rru_A2531 0.73 -1.0
2,945,648 - -0.3
2,945,717 - -0.1
2,945,828 - flgE Rru_A2532 0.13 -0.5
2,945,828 - flgE Rru_A2532 0.13 +0.8
2,945,828 - flgE Rru_A2532 0.13 -0.4
2,945,924 - flgE Rru_A2532 0.20 -0.7
2,945,924 - flgE Rru_A2532 0.20 -0.4
2,945,960 - flgE Rru_A2532 0.23 -0.0
2,945,960 - flgE Rru_A2532 0.23 +0.0
2,945,996 - flgE Rru_A2532 0.25 -0.1
2,945,996 - flgE Rru_A2532 0.25 -0.2
2,945,996 - flgE Rru_A2532 0.25 +0.9
2,945,996 - flgE Rru_A2532 0.25 -2.5
2,946,005 - flgE Rru_A2532 0.26 -0.2
2,946,069 - flgE Rru_A2532 0.31 -0.4
2,946,069 - flgE Rru_A2532 0.31 -0.5
2,946,074 - flgE Rru_A2532 0.31 -0.3
2,946,132 - flgE Rru_A2532 0.35 -0.4
2,946,234 - flgE Rru_A2532 0.43 -0.6
2,946,350 - flgE Rru_A2532 0.51 -0.5
2,946,452 + flgE Rru_A2532 0.58 -1.5
2,946,454 + flgE Rru_A2532 0.58 -0.7

Or see this region's nucleotide sequence