Experiment: Succinate (C)_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2209 and Rru_A2210 are separated by 153 nucleotides Rru_A2210 and Rru_A2211 are separated by 203 nucleotides
Rru_A2209: Rru_A2209 - AsmA (NCBI), at 2,564,644 to 2,567,877
_A2209
Rru_A2210: Rru_A2210 - Phosphoglycerate/bisphosphoglycerate mutase (NCBI), at 2,568,031 to 2,568,606
_A2210
Rru_A2211: Rru_A2211 - Porin, Gram-negative type (NCBI), at 2,568,810 to 2,569,898
_A2211
Position (kb)
2568
2569 Strain fitness (log2 ratio)
-1
0
1 at 2567.200 kb on + strand, within Rru_A2209 at 2567.200 kb on + strand, within Rru_A2209 at 2567.201 kb on - strand, within Rru_A2209 at 2567.786 kb on + strand at 2567.786 kb on + strand at 2567.787 kb on - strand at 2567.787 kb on - strand at 2567.867 kb on - strand at 2567.891 kb on + strand at 2567.892 kb on - strand at 2567.892 kb on - strand at 2567.898 kb on - strand at 2567.925 kb on + strand at 2567.932 kb on + strand at 2567.932 kb on + strand at 2567.932 kb on + strand at 2567.932 kb on + strand at 2567.932 kb on + strand at 2567.933 kb on - strand at 2568.008 kb on + strand at 2568.009 kb on - strand at 2568.009 kb on - strand at 2568.009 kb on - strand at 2568.009 kb on - strand at 2568.021 kb on + strand at 2568.022 kb on - strand at 2568.282 kb on + strand, within Rru_A2210 at 2568.563 kb on + strand at 2568.564 kb on - strand at 2568.581 kb on - strand at 2568.630 kb on + strand at 2568.631 kb on - strand at 2568.698 kb on - strand at 2568.751 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinate (C)_noKan remove 2,567,200 + Rru_A2209 0.79 -0.6 2,567,200 + Rru_A2209 0.79 -0.6 2,567,201 - Rru_A2209 0.79 +0.8 2,567,786 + -0.4 2,567,786 + +0.2 2,567,787 - +0.2 2,567,787 - +0.2 2,567,867 - -0.2 2,567,891 + +0.7 2,567,892 - +1.2 2,567,892 - -0.1 2,567,898 - +0.7 2,567,925 + -0.7 2,567,932 + -0.5 2,567,932 + -1.5 2,567,932 + -0.3 2,567,932 + -0.3 2,567,932 + -0.3 2,567,933 - -0.8 2,568,008 + +0.2 2,568,009 - -0.0 2,568,009 - -0.6 2,568,009 - -0.4 2,568,009 - -0.2 2,568,021 + +0.1 2,568,022 - +0.2 2,568,282 + Rru_A2210 0.44 -0.2 2,568,563 + -0.6 2,568,564 - +0.0 2,568,581 - -0.0 2,568,630 + -0.1 2,568,631 - -0.4 2,568,698 - +0.1 2,568,751 + -0.6
Or see this region's nucleotide sequence