Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1903

Experiment: Succinate (C)_noKan

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1902 and Rru_A1903 are separated by 52 nucleotidesRru_A1903 and Rru_A1904 are separated by 1 nucleotides Rru_A1902: Rru_A1902 - Basic membrane lipoprotein (NCBI), at 2,204,594 to 2,205,673 _A1902 Rru_A1903: Rru_A1903 - inner-membrane translocator (NCBI), at 2,205,726 to 2,206,652 _A1903 Rru_A1904: Rru_A1904 - inner-membrane translocator (NCBI), at 2,206,654 to 2,207,748 _A1904 Position (kb) 2205 2206 2207Strain fitness (log2 ratio) -1 0 1 2at 2204.797 kb on + strand, within Rru_A1902at 2204.797 kb on + strand, within Rru_A1902at 2204.798 kb on - strand, within Rru_A1902at 2204.798 kb on - strand, within Rru_A1902at 2204.798 kb on - strand, within Rru_A1902at 2204.798 kb on - strand, within Rru_A1902at 2204.799 kb on + strand, within Rru_A1902at 2204.799 kb on + strand, within Rru_A1902at 2204.799 kb on + strand, within Rru_A1902at 2204.800 kb on - strand, within Rru_A1902at 2204.892 kb on + strand, within Rru_A1902at 2204.892 kb on + strand, within Rru_A1902at 2204.892 kb on + strand, within Rru_A1902at 2204.893 kb on - strand, within Rru_A1902at 2204.893 kb on - strand, within Rru_A1902at 2204.893 kb on - strand, within Rru_A1902at 2204.895 kb on + strand, within Rru_A1902at 2204.895 kb on + strand, within Rru_A1902at 2204.895 kb on + strand, within Rru_A1902at 2204.896 kb on - strand, within Rru_A1902at 2205.022 kb on + strand, within Rru_A1902at 2205.023 kb on - strand, within Rru_A1902at 2205.093 kb on + strand, within Rru_A1902at 2205.093 kb on + strand, within Rru_A1902at 2205.094 kb on - strand, within Rru_A1902at 2205.094 kb on - strand, within Rru_A1902at 2205.094 kb on - strand, within Rru_A1902at 2205.207 kb on + strand, within Rru_A1902at 2205.207 kb on + strand, within Rru_A1902at 2205.208 kb on - strand, within Rru_A1902at 2205.258 kb on + strand, within Rru_A1902at 2205.258 kb on + strand, within Rru_A1902at 2205.258 kb on + strand, within Rru_A1902at 2205.259 kb on - strand, within Rru_A1902at 2205.259 kb on - strand, within Rru_A1902at 2205.259 kb on - strand, within Rru_A1902at 2205.259 kb on - strand, within Rru_A1902at 2205.271 kb on - strand, within Rru_A1902at 2205.271 kb on - strand, within Rru_A1902at 2205.285 kb on + strand, within Rru_A1902at 2205.285 kb on + strand, within Rru_A1902at 2205.286 kb on - strand, within Rru_A1902at 2205.286 kb on - strand, within Rru_A1902at 2205.286 kb on - strand, within Rru_A1902at 2205.286 kb on - strand, within Rru_A1902at 2205.312 kb on + strand, within Rru_A1902at 2205.408 kb on + strand, within Rru_A1902at 2205.408 kb on + strand, within Rru_A1902at 2205.570 kb on + strandat 2205.570 kb on + strandat 2205.571 kb on - strandat 2205.571 kb on - strandat 2205.689 kb on + strandat 2205.690 kb on - strandat 2205.744 kb on + strandat 2205.744 kb on + strandat 2205.744 kb on + strandat 2205.744 kb on + strandat 2205.744 kb on + strandat 2205.744 kb on + strandat 2205.744 kb on + strandat 2205.744 kb on + strandat 2205.744 kb on + strandat 2205.745 kb on - strandat 2205.745 kb on - strandat 2205.745 kb on - strandat 2205.745 kb on - strandat 2205.745 kb on - strandat 2205.829 kb on + strand, within Rru_A1903at 2205.830 kb on - strand, within Rru_A1903at 2205.881 kb on + strand, within Rru_A1903at 2205.916 kb on + strand, within Rru_A1903at 2206.020 kb on - strand, within Rru_A1903at 2206.021 kb on + strand, within Rru_A1903at 2206.021 kb on + strand, within Rru_A1903at 2206.022 kb on - strand, within Rru_A1903at 2206.022 kb on - strand, within Rru_A1903at 2206.022 kb on - strand, within Rru_A1903at 2206.022 kb on - strand, within Rru_A1903at 2206.036 kb on + strand, within Rru_A1903at 2206.036 kb on + strand, within Rru_A1903at 2206.036 kb on + strand, within Rru_A1903at 2206.036 kb on + strand, within Rru_A1903at 2206.036 kb on + strand, within Rru_A1903at 2206.037 kb on - strand, within Rru_A1903at 2206.106 kb on - strand, within Rru_A1903at 2206.216 kb on + strand, within Rru_A1903at 2206.217 kb on - strand, within Rru_A1903at 2206.217 kb on - strand, within Rru_A1903at 2206.217 kb on - strand, within Rru_A1903at 2206.217 kb on - strand, within Rru_A1903at 2206.217 kb on - strand, within Rru_A1903at 2206.217 kb on - strand, within Rru_A1903at 2206.780 kb on - strand, within Rru_A1904at 2206.808 kb on + strand, within Rru_A1904at 2206.808 kb on + strand, within Rru_A1904at 2206.809 kb on - strand, within Rru_A1904at 2206.809 kb on - strand, within Rru_A1904at 2207.024 kb on + strand, within Rru_A1904at 2207.025 kb on - strand, within Rru_A1904at 2207.025 kb on - strand, within Rru_A1904at 2207.270 kb on + strand, within Rru_A1904at 2207.270 kb on + strand, within Rru_A1904at 2207.270 kb on + strand, within Rru_A1904at 2207.270 kb on + strand, within Rru_A1904at 2207.271 kb on - strand, within Rru_A1904at 2207.271 kb on - strand, within Rru_A1904at 2207.271 kb on - strand, within Rru_A1904at 2207.271 kb on - strand, within Rru_A1904at 2207.271 kb on - strand, within Rru_A1904at 2207.271 kb on - strand, within Rru_A1904at 2207.271 kb on - strand, within Rru_A1904at 2207.271 kb on - strand, within Rru_A1904at 2207.271 kb on - strand, within Rru_A1904at 2207.271 kb on - strand, within Rru_A1904at 2207.561 kb on + strand, within Rru_A1904at 2207.562 kb on - strand, within Rru_A1904at 2207.562 kb on - strand, within Rru_A1904

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinate (C)_noKan
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2,204,797 + Rru_A1902 0.19 +1.1
2,204,797 + Rru_A1902 0.19 -0.5
2,204,798 - Rru_A1902 0.19 -0.2
2,204,798 - Rru_A1902 0.19 -0.9
2,204,798 - Rru_A1902 0.19 -0.5
2,204,798 - Rru_A1902 0.19 +0.3
2,204,799 + Rru_A1902 0.19 -0.4
2,204,799 + Rru_A1902 0.19 +2.0
2,204,799 + Rru_A1902 0.19 -0.5
2,204,800 - Rru_A1902 0.19 -0.5
2,204,892 + Rru_A1902 0.28 +0.2
2,204,892 + Rru_A1902 0.28 +0.3
2,204,892 + Rru_A1902 0.28 +0.1
2,204,893 - Rru_A1902 0.28 -0.7
2,204,893 - Rru_A1902 0.28 -0.3
2,204,893 - Rru_A1902 0.28 -0.4
2,204,895 + Rru_A1902 0.28 -0.4
2,204,895 + Rru_A1902 0.28 -0.1
2,204,895 + Rru_A1902 0.28 -0.4
2,204,896 - Rru_A1902 0.28 -1.2
2,205,022 + Rru_A1902 0.40 +1.6
2,205,023 - Rru_A1902 0.40 -0.1
2,205,093 + Rru_A1902 0.46 -0.3
2,205,093 + Rru_A1902 0.46 -1.0
2,205,094 - Rru_A1902 0.46 -0.8
2,205,094 - Rru_A1902 0.46 -0.1
2,205,094 - Rru_A1902 0.46 -0.1
2,205,207 + Rru_A1902 0.57 -0.1
2,205,207 + Rru_A1902 0.57 -0.3
2,205,208 - Rru_A1902 0.57 -0.4
2,205,258 + Rru_A1902 0.61 -0.3
2,205,258 + Rru_A1902 0.61 +0.4
2,205,258 + Rru_A1902 0.61 -0.2
2,205,259 - Rru_A1902 0.62 -0.2
2,205,259 - Rru_A1902 0.62 -0.1
2,205,259 - Rru_A1902 0.62 -0.1
2,205,259 - Rru_A1902 0.62 -0.5
2,205,271 - Rru_A1902 0.63 -0.0
2,205,271 - Rru_A1902 0.63 +0.6
2,205,285 + Rru_A1902 0.64 -0.0
2,205,285 + Rru_A1902 0.64 -0.1
2,205,286 - Rru_A1902 0.64 -0.1
2,205,286 - Rru_A1902 0.64 -0.1
2,205,286 - Rru_A1902 0.64 -0.2
2,205,286 - Rru_A1902 0.64 -0.0
2,205,312 + Rru_A1902 0.66 -0.4
2,205,408 + Rru_A1902 0.75 +0.3
2,205,408 + Rru_A1902 0.75 +0.2
2,205,570 + -0.2
2,205,570 + +0.4
2,205,571 - -0.6
2,205,571 - -0.5
2,205,689 + -0.7
2,205,690 - +0.4
2,205,744 + +1.6
2,205,744 + -0.6
2,205,744 + +0.2
2,205,744 + -0.3
2,205,744 + +0.1
2,205,744 + -0.4
2,205,744 + +1.1
2,205,744 + +0.4
2,205,744 + -1.4
2,205,745 - -0.8
2,205,745 - +0.2
2,205,745 - -1.1
2,205,745 - -0.6
2,205,745 - +0.4
2,205,829 + Rru_A1903 0.11 -0.1
2,205,830 - Rru_A1903 0.11 -0.2
2,205,881 + Rru_A1903 0.17 -0.6
2,205,916 + Rru_A1903 0.20 -0.7
2,206,020 - Rru_A1903 0.32 -0.6
2,206,021 + Rru_A1903 0.32 -0.3
2,206,021 + Rru_A1903 0.32 -0.4
2,206,022 - Rru_A1903 0.32 -1.0
2,206,022 - Rru_A1903 0.32 -0.1
2,206,022 - Rru_A1903 0.32 +1.2
2,206,022 - Rru_A1903 0.32 -0.5
2,206,036 + Rru_A1903 0.33 +0.6
2,206,036 + Rru_A1903 0.33 -0.4
2,206,036 + Rru_A1903 0.33 +1.6
2,206,036 + Rru_A1903 0.33 -0.8
2,206,036 + Rru_A1903 0.33 +0.2
2,206,037 - Rru_A1903 0.34 -1.1
2,206,106 - Rru_A1903 0.41 -0.3
2,206,216 + Rru_A1903 0.53 -0.1
2,206,217 - Rru_A1903 0.53 +0.1
2,206,217 - Rru_A1903 0.53 -0.2
2,206,217 - Rru_A1903 0.53 +0.3
2,206,217 - Rru_A1903 0.53 +0.0
2,206,217 - Rru_A1903 0.53 +0.4
2,206,217 - Rru_A1903 0.53 -0.5
2,206,780 - Rru_A1904 0.12 +1.1
2,206,808 + Rru_A1904 0.14 +0.0
2,206,808 + Rru_A1904 0.14 -0.1
2,206,809 - Rru_A1904 0.14 +0.8
2,206,809 - Rru_A1904 0.14 -0.1
2,207,024 + Rru_A1904 0.34 +1.6
2,207,025 - Rru_A1904 0.34 -0.4
2,207,025 - Rru_A1904 0.34 -1.4
2,207,270 + Rru_A1904 0.56 -0.1
2,207,270 + Rru_A1904 0.56 -0.7
2,207,270 + Rru_A1904 0.56 -0.2
2,207,270 + Rru_A1904 0.56 +0.5
2,207,271 - Rru_A1904 0.56 -0.2
2,207,271 - Rru_A1904 0.56 -0.3
2,207,271 - Rru_A1904 0.56 +0.9
2,207,271 - Rru_A1904 0.56 -0.2
2,207,271 - Rru_A1904 0.56 -0.2
2,207,271 - Rru_A1904 0.56 -1.2
2,207,271 - Rru_A1904 0.56 +0.9
2,207,271 - Rru_A1904 0.56 -0.3
2,207,271 - Rru_A1904 0.56 -0.6
2,207,271 - Rru_A1904 0.56 -0.5
2,207,561 + Rru_A1904 0.83 -0.4
2,207,562 - Rru_A1904 0.83 +0.9
2,207,562 - Rru_A1904 0.83 +0.1

Or see this region's nucleotide sequence