Experiment: Succinate (C)_noKan
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1902 and Rru_A1903 are separated by 52 nucleotides Rru_A1903 and Rru_A1904 are separated by 1 nucleotides
Rru_A1902: Rru_A1902 - Basic membrane lipoprotein (NCBI), at 2,204,594 to 2,205,673
_A1902
Rru_A1903: Rru_A1903 - inner-membrane translocator (NCBI), at 2,205,726 to 2,206,652
_A1903
Rru_A1904: Rru_A1904 - inner-membrane translocator (NCBI), at 2,206,654 to 2,207,748
_A1904
Position (kb)
2205
2206
2207 Strain fitness (log2 ratio)
-1
0
1
2 at 2204.797 kb on + strand, within Rru_A1902 at 2204.797 kb on + strand, within Rru_A1902 at 2204.798 kb on - strand, within Rru_A1902 at 2204.798 kb on - strand, within Rru_A1902 at 2204.798 kb on - strand, within Rru_A1902 at 2204.798 kb on - strand, within Rru_A1902 at 2204.799 kb on + strand, within Rru_A1902 at 2204.799 kb on + strand, within Rru_A1902 at 2204.799 kb on + strand, within Rru_A1902 at 2204.800 kb on - strand, within Rru_A1902 at 2204.892 kb on + strand, within Rru_A1902 at 2204.892 kb on + strand, within Rru_A1902 at 2204.892 kb on + strand, within Rru_A1902 at 2204.893 kb on - strand, within Rru_A1902 at 2204.893 kb on - strand, within Rru_A1902 at 2204.893 kb on - strand, within Rru_A1902 at 2204.895 kb on + strand, within Rru_A1902 at 2204.895 kb on + strand, within Rru_A1902 at 2204.895 kb on + strand, within Rru_A1902 at 2204.896 kb on - strand, within Rru_A1902 at 2205.022 kb on + strand, within Rru_A1902 at 2205.023 kb on - strand, within Rru_A1902 at 2205.093 kb on + strand, within Rru_A1902 at 2205.093 kb on + strand, within Rru_A1902 at 2205.094 kb on - strand, within Rru_A1902 at 2205.094 kb on - strand, within Rru_A1902 at 2205.094 kb on - strand, within Rru_A1902 at 2205.207 kb on + strand, within Rru_A1902 at 2205.207 kb on + strand, within Rru_A1902 at 2205.208 kb on - strand, within Rru_A1902 at 2205.258 kb on + strand, within Rru_A1902 at 2205.258 kb on + strand, within Rru_A1902 at 2205.258 kb on + strand, within Rru_A1902 at 2205.259 kb on - strand, within Rru_A1902 at 2205.259 kb on - strand, within Rru_A1902 at 2205.259 kb on - strand, within Rru_A1902 at 2205.259 kb on - strand, within Rru_A1902 at 2205.271 kb on - strand, within Rru_A1902 at 2205.271 kb on - strand, within Rru_A1902 at 2205.285 kb on + strand, within Rru_A1902 at 2205.285 kb on + strand, within Rru_A1902 at 2205.286 kb on - strand, within Rru_A1902 at 2205.286 kb on - strand, within Rru_A1902 at 2205.286 kb on - strand, within Rru_A1902 at 2205.286 kb on - strand, within Rru_A1902 at 2205.312 kb on + strand, within Rru_A1902 at 2205.408 kb on + strand, within Rru_A1902 at 2205.408 kb on + strand, within Rru_A1902 at 2205.570 kb on + strand at 2205.570 kb on + strand at 2205.571 kb on - strand at 2205.571 kb on - strand at 2205.689 kb on + strand at 2205.690 kb on - strand at 2205.744 kb on + strand at 2205.744 kb on + strand at 2205.744 kb on + strand at 2205.744 kb on + strand at 2205.744 kb on + strand at 2205.744 kb on + strand at 2205.744 kb on + strand at 2205.744 kb on + strand at 2205.744 kb on + strand at 2205.745 kb on - strand at 2205.745 kb on - strand at 2205.745 kb on - strand at 2205.745 kb on - strand at 2205.745 kb on - strand at 2205.829 kb on + strand, within Rru_A1903 at 2205.830 kb on - strand, within Rru_A1903 at 2205.881 kb on + strand, within Rru_A1903 at 2205.916 kb on + strand, within Rru_A1903 at 2206.020 kb on - strand, within Rru_A1903 at 2206.021 kb on + strand, within Rru_A1903 at 2206.021 kb on + strand, within Rru_A1903 at 2206.022 kb on - strand, within Rru_A1903 at 2206.022 kb on - strand, within Rru_A1903 at 2206.022 kb on - strand, within Rru_A1903 at 2206.022 kb on - strand, within Rru_A1903 at 2206.036 kb on + strand, within Rru_A1903 at 2206.036 kb on + strand, within Rru_A1903 at 2206.036 kb on + strand, within Rru_A1903 at 2206.036 kb on + strand, within Rru_A1903 at 2206.036 kb on + strand, within Rru_A1903 at 2206.037 kb on - strand, within Rru_A1903 at 2206.106 kb on - strand, within Rru_A1903 at 2206.216 kb on + strand, within Rru_A1903 at 2206.217 kb on - strand, within Rru_A1903 at 2206.217 kb on - strand, within Rru_A1903 at 2206.217 kb on - strand, within Rru_A1903 at 2206.217 kb on - strand, within Rru_A1903 at 2206.217 kb on - strand, within Rru_A1903 at 2206.217 kb on - strand, within Rru_A1903 at 2206.780 kb on - strand, within Rru_A1904 at 2206.808 kb on + strand, within Rru_A1904 at 2206.808 kb on + strand, within Rru_A1904 at 2206.809 kb on - strand, within Rru_A1904 at 2206.809 kb on - strand, within Rru_A1904 at 2207.024 kb on + strand, within Rru_A1904 at 2207.025 kb on - strand, within Rru_A1904 at 2207.025 kb on - strand, within Rru_A1904 at 2207.270 kb on + strand, within Rru_A1904 at 2207.270 kb on + strand, within Rru_A1904 at 2207.270 kb on + strand, within Rru_A1904 at 2207.270 kb on + strand, within Rru_A1904 at 2207.271 kb on - strand, within Rru_A1904 at 2207.271 kb on - strand, within Rru_A1904 at 2207.271 kb on - strand, within Rru_A1904 at 2207.271 kb on - strand, within Rru_A1904 at 2207.271 kb on - strand, within Rru_A1904 at 2207.271 kb on - strand, within Rru_A1904 at 2207.271 kb on - strand, within Rru_A1904 at 2207.271 kb on - strand, within Rru_A1904 at 2207.271 kb on - strand, within Rru_A1904 at 2207.271 kb on - strand, within Rru_A1904 at 2207.561 kb on + strand, within Rru_A1904 at 2207.562 kb on - strand, within Rru_A1904 at 2207.562 kb on - strand, within Rru_A1904
Per-strain Table
Position Strand Gene LocusTag Fraction Succinate (C)_noKan remove 2,204,797 + Rru_A1902 0.19 +1.1 2,204,797 + Rru_A1902 0.19 -0.5 2,204,798 - Rru_A1902 0.19 -0.2 2,204,798 - Rru_A1902 0.19 -0.9 2,204,798 - Rru_A1902 0.19 -0.5 2,204,798 - Rru_A1902 0.19 +0.3 2,204,799 + Rru_A1902 0.19 -0.4 2,204,799 + Rru_A1902 0.19 +2.0 2,204,799 + Rru_A1902 0.19 -0.5 2,204,800 - Rru_A1902 0.19 -0.5 2,204,892 + Rru_A1902 0.28 +0.2 2,204,892 + Rru_A1902 0.28 +0.3 2,204,892 + Rru_A1902 0.28 +0.1 2,204,893 - Rru_A1902 0.28 -0.7 2,204,893 - Rru_A1902 0.28 -0.3 2,204,893 - Rru_A1902 0.28 -0.4 2,204,895 + Rru_A1902 0.28 -0.4 2,204,895 + Rru_A1902 0.28 -0.1 2,204,895 + Rru_A1902 0.28 -0.4 2,204,896 - Rru_A1902 0.28 -1.2 2,205,022 + Rru_A1902 0.40 +1.6 2,205,023 - Rru_A1902 0.40 -0.1 2,205,093 + Rru_A1902 0.46 -0.3 2,205,093 + Rru_A1902 0.46 -1.0 2,205,094 - Rru_A1902 0.46 -0.8 2,205,094 - Rru_A1902 0.46 -0.1 2,205,094 - Rru_A1902 0.46 -0.1 2,205,207 + Rru_A1902 0.57 -0.1 2,205,207 + Rru_A1902 0.57 -0.3 2,205,208 - Rru_A1902 0.57 -0.4 2,205,258 + Rru_A1902 0.61 -0.3 2,205,258 + Rru_A1902 0.61 +0.4 2,205,258 + Rru_A1902 0.61 -0.2 2,205,259 - Rru_A1902 0.62 -0.2 2,205,259 - Rru_A1902 0.62 -0.1 2,205,259 - Rru_A1902 0.62 -0.1 2,205,259 - Rru_A1902 0.62 -0.5 2,205,271 - Rru_A1902 0.63 -0.0 2,205,271 - Rru_A1902 0.63 +0.6 2,205,285 + Rru_A1902 0.64 -0.0 2,205,285 + Rru_A1902 0.64 -0.1 2,205,286 - Rru_A1902 0.64 -0.1 2,205,286 - Rru_A1902 0.64 -0.1 2,205,286 - Rru_A1902 0.64 -0.2 2,205,286 - Rru_A1902 0.64 -0.0 2,205,312 + Rru_A1902 0.66 -0.4 2,205,408 + Rru_A1902 0.75 +0.3 2,205,408 + Rru_A1902 0.75 +0.2 2,205,570 + -0.2 2,205,570 + +0.4 2,205,571 - -0.6 2,205,571 - -0.5 2,205,689 + -0.7 2,205,690 - +0.4 2,205,744 + +1.6 2,205,744 + -0.6 2,205,744 + +0.2 2,205,744 + -0.3 2,205,744 + +0.1 2,205,744 + -0.4 2,205,744 + +1.1 2,205,744 + +0.4 2,205,744 + -1.4 2,205,745 - -0.8 2,205,745 - +0.2 2,205,745 - -1.1 2,205,745 - -0.6 2,205,745 - +0.4 2,205,829 + Rru_A1903 0.11 -0.1 2,205,830 - Rru_A1903 0.11 -0.2 2,205,881 + Rru_A1903 0.17 -0.6 2,205,916 + Rru_A1903 0.20 -0.7 2,206,020 - Rru_A1903 0.32 -0.6 2,206,021 + Rru_A1903 0.32 -0.3 2,206,021 + Rru_A1903 0.32 -0.4 2,206,022 - Rru_A1903 0.32 -1.0 2,206,022 - Rru_A1903 0.32 -0.1 2,206,022 - Rru_A1903 0.32 +1.2 2,206,022 - Rru_A1903 0.32 -0.5 2,206,036 + Rru_A1903 0.33 +0.6 2,206,036 + Rru_A1903 0.33 -0.4 2,206,036 + Rru_A1903 0.33 +1.6 2,206,036 + Rru_A1903 0.33 -0.8 2,206,036 + Rru_A1903 0.33 +0.2 2,206,037 - Rru_A1903 0.34 -1.1 2,206,106 - Rru_A1903 0.41 -0.3 2,206,216 + Rru_A1903 0.53 -0.1 2,206,217 - Rru_A1903 0.53 +0.1 2,206,217 - Rru_A1903 0.53 -0.2 2,206,217 - Rru_A1903 0.53 +0.3 2,206,217 - Rru_A1903 0.53 +0.0 2,206,217 - Rru_A1903 0.53 +0.4 2,206,217 - Rru_A1903 0.53 -0.5 2,206,780 - Rru_A1904 0.12 +1.1 2,206,808 + Rru_A1904 0.14 +0.0 2,206,808 + Rru_A1904 0.14 -0.1 2,206,809 - Rru_A1904 0.14 +0.8 2,206,809 - Rru_A1904 0.14 -0.1 2,207,024 + Rru_A1904 0.34 +1.6 2,207,025 - Rru_A1904 0.34 -0.4 2,207,025 - Rru_A1904 0.34 -1.4 2,207,270 + Rru_A1904 0.56 -0.1 2,207,270 + Rru_A1904 0.56 -0.7 2,207,270 + Rru_A1904 0.56 -0.2 2,207,270 + Rru_A1904 0.56 +0.5 2,207,271 - Rru_A1904 0.56 -0.2 2,207,271 - Rru_A1904 0.56 -0.3 2,207,271 - Rru_A1904 0.56 +0.9 2,207,271 - Rru_A1904 0.56 -0.2 2,207,271 - Rru_A1904 0.56 -0.2 2,207,271 - Rru_A1904 0.56 -1.2 2,207,271 - Rru_A1904 0.56 +0.9 2,207,271 - Rru_A1904 0.56 -0.3 2,207,271 - Rru_A1904 0.56 -0.6 2,207,271 - Rru_A1904 0.56 -0.5 2,207,561 + Rru_A1904 0.83 -0.4 2,207,562 - Rru_A1904 0.83 +0.9 2,207,562 - Rru_A1904 0.83 +0.1
Or see this region's nucleotide sequence