Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0460

Experiment: Succinate (C)_noKan

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0459 and Rru_A0460 are separated by 121 nucleotidesRru_A0460 and Rru_A0461 are separated by 105 nucleotides Rru_A0459: Rru_A0459 - hypothetical protein (NCBI), at 538,980 to 539,894 _A0459 Rru_A0460: Rru_A0460 - NADP oxidoreductase, coenzyme F420-dependent (NCBI), at 540,016 to 540,642 _A0460 Rru_A0461: Rru_A0461 - Transcriptional Regulator, LysR family (NCBI), at 540,748 to 541,641 _A0461 Position (kb) 540 541Strain fitness (log2 ratio) -1 0 1 2at 539.035 kb on + strandat 539.035 kb on + strandat 539.200 kb on + strand, within Rru_A0459at 539.200 kb on + strand, within Rru_A0459at 539.201 kb on - strand, within Rru_A0459at 539.213 kb on + strand, within Rru_A0459at 539.214 kb on - strand, within Rru_A0459at 539.278 kb on + strand, within Rru_A0459at 539.278 kb on + strand, within Rru_A0459at 539.279 kb on - strand, within Rru_A0459at 539.279 kb on - strand, within Rru_A0459at 539.279 kb on - strand, within Rru_A0459at 539.279 kb on - strand, within Rru_A0459at 539.428 kb on + strand, within Rru_A0459at 539.429 kb on - strand, within Rru_A0459at 539.472 kb on - strand, within Rru_A0459at 539.481 kb on + strand, within Rru_A0459at 539.519 kb on + strand, within Rru_A0459at 539.546 kb on - strand, within Rru_A0459at 539.683 kb on - strand, within Rru_A0459at 539.698 kb on + strand, within Rru_A0459at 539.699 kb on - strand, within Rru_A0459at 539.735 kb on + strand, within Rru_A0459at 539.858 kb on + strandat 539.859 kb on - strandat 539.893 kb on - strandat 539.893 kb on - strandat 539.898 kb on + strandat 539.898 kb on + strandat 539.898 kb on + strandat 539.898 kb on + strandat 539.900 kb on + strandat 539.901 kb on - strandat 539.901 kb on - strandat 539.901 kb on - strandat 540.074 kb on + strandat 540.074 kb on + strandat 540.074 kb on + strandat 540.074 kb on + strandat 540.075 kb on - strandat 540.377 kb on + strand, within Rru_A0460at 540.377 kb on + strand, within Rru_A0460at 540.377 kb on + strand, within Rru_A0460at 540.377 kb on + strand, within Rru_A0460at 540.378 kb on - strand, within Rru_A0460at 540.378 kb on - strand, within Rru_A0460at 540.378 kb on - strand, within Rru_A0460at 540.378 kb on - strand, within Rru_A0460at 540.378 kb on - strand, within Rru_A0460at 540.381 kb on + strand, within Rru_A0460at 540.381 kb on + strand, within Rru_A0460at 540.381 kb on + strand, within Rru_A0460at 540.381 kb on + strand, within Rru_A0460at 540.381 kb on + strand, within Rru_A0460at 540.381 kb on + strand, within Rru_A0460at 540.381 kb on + strand, within Rru_A0460at 540.381 kb on + strand, within Rru_A0460at 540.382 kb on - strand, within Rru_A0460at 540.382 kb on - strand, within Rru_A0460at 540.382 kb on - strand, within Rru_A0460at 540.382 kb on - strand, within Rru_A0460at 540.382 kb on - strand, within Rru_A0460at 540.382 kb on - strand, within Rru_A0460at 540.627 kb on + strandat 540.627 kb on + strandat 540.628 kb on - strandat 540.628 kb on - strandat 540.940 kb on + strand, within Rru_A0461at 540.941 kb on - strand, within Rru_A0461at 540.943 kb on + strand, within Rru_A0461at 540.943 kb on + strand, within Rru_A0461at 540.943 kb on + strand, within Rru_A0461at 540.943 kb on + strand, within Rru_A0461at 540.944 kb on - strand, within Rru_A0461at 540.944 kb on - strand, within Rru_A0461at 541.087 kb on + strand, within Rru_A0461at 541.122 kb on + strand, within Rru_A0461at 541.179 kb on + strand, within Rru_A0461at 541.254 kb on + strand, within Rru_A0461at 541.255 kb on - strand, within Rru_A0461at 541.255 kb on - strand, within Rru_A0461at 541.258 kb on + strand, within Rru_A0461at 541.258 kb on + strand, within Rru_A0461at 541.258 kb on + strand, within Rru_A0461at 541.258 kb on + strand, within Rru_A0461at 541.258 kb on + strand, within Rru_A0461at 541.259 kb on - strand, within Rru_A0461at 541.259 kb on - strand, within Rru_A0461at 541.259 kb on - strand, within Rru_A0461at 541.321 kb on + strand, within Rru_A0461at 541.321 kb on + strand, within Rru_A0461at 541.321 kb on + strand, within Rru_A0461at 541.321 kb on + strand, within Rru_A0461at 541.322 kb on - strand, within Rru_A0461at 541.322 kb on - strand, within Rru_A0461at 541.322 kb on - strand, within Rru_A0461at 541.322 kb on - strand, within Rru_A0461at 541.322 kb on - strand, within Rru_A0461at 541.322 kb on - strand, within Rru_A0461at 541.327 kb on + strand, within Rru_A0461at 541.327 kb on + strand, within Rru_A0461at 541.327 kb on + strand, within Rru_A0461at 541.639 kb on + strandat 541.640 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinate (C)_noKan
remove
539,035 + +0.3
539,035 + -0.6
539,200 + Rru_A0459 0.24 +0.8
539,200 + Rru_A0459 0.24 +0.3
539,201 - Rru_A0459 0.24 -0.2
539,213 + Rru_A0459 0.25 +0.1
539,214 - Rru_A0459 0.26 -0.1
539,278 + Rru_A0459 0.33 -0.1
539,278 + Rru_A0459 0.33 -0.5
539,279 - Rru_A0459 0.33 -0.1
539,279 - Rru_A0459 0.33 -0.0
539,279 - Rru_A0459 0.33 +0.0
539,279 - Rru_A0459 0.33 -0.5
539,428 + Rru_A0459 0.49 +0.3
539,429 - Rru_A0459 0.49 -0.2
539,472 - Rru_A0459 0.54 -0.1
539,481 + Rru_A0459 0.55 -0.1
539,519 + Rru_A0459 0.59 +0.6
539,546 - Rru_A0459 0.62 -0.2
539,683 - Rru_A0459 0.77 -0.1
539,698 + Rru_A0459 0.78 -0.7
539,699 - Rru_A0459 0.79 -0.3
539,735 + Rru_A0459 0.83 -0.6
539,858 + -0.1
539,859 - +0.5
539,893 - +0.3
539,893 - +0.8
539,898 + -0.5
539,898 + -0.4
539,898 + +0.4
539,898 + -0.2
539,900 + -0.1
539,901 - +0.4
539,901 - +0.4
539,901 - +0.2
540,074 + +0.6
540,074 + +0.3
540,074 + -0.2
540,074 + +0.0
540,075 - +0.1
540,377 + Rru_A0460 0.58 +0.1
540,377 + Rru_A0460 0.58 -0.6
540,377 + Rru_A0460 0.58 +0.2
540,377 + Rru_A0460 0.58 -0.2
540,378 - Rru_A0460 0.58 -0.9
540,378 - Rru_A0460 0.58 -0.3
540,378 - Rru_A0460 0.58 +0.1
540,378 - Rru_A0460 0.58 -0.8
540,378 - Rru_A0460 0.58 -1.0
540,381 + Rru_A0460 0.58 -0.1
540,381 + Rru_A0460 0.58 -1.0
540,381 + Rru_A0460 0.58 +0.5
540,381 + Rru_A0460 0.58 +0.1
540,381 + Rru_A0460 0.58 +0.8
540,381 + Rru_A0460 0.58 -0.4
540,381 + Rru_A0460 0.58 -0.1
540,381 + Rru_A0460 0.58 -0.8
540,382 - Rru_A0460 0.58 -0.0
540,382 - Rru_A0460 0.58 -0.2
540,382 - Rru_A0460 0.58 -0.6
540,382 - Rru_A0460 0.58 -0.6
540,382 - Rru_A0460 0.58 +0.1
540,382 - Rru_A0460 0.58 +0.0
540,627 + +0.4
540,627 + -1.7
540,628 - +0.2
540,628 - -1.3
540,940 + Rru_A0461 0.21 -0.1
540,941 - Rru_A0461 0.22 -0.6
540,943 + Rru_A0461 0.22 +0.1
540,943 + Rru_A0461 0.22 +0.0
540,943 + Rru_A0461 0.22 -0.0
540,943 + Rru_A0461 0.22 +0.5
540,944 - Rru_A0461 0.22 +0.3
540,944 - Rru_A0461 0.22 -0.0
541,087 + Rru_A0461 0.38 -0.5
541,122 + Rru_A0461 0.42 -1.0
541,179 + Rru_A0461 0.48 -0.3
541,254 + Rru_A0461 0.57 -0.4
541,255 - Rru_A0461 0.57 +2.3
541,255 - Rru_A0461 0.57 -0.2
541,258 + Rru_A0461 0.57 -0.3
541,258 + Rru_A0461 0.57 -0.1
541,258 + Rru_A0461 0.57 -0.2
541,258 + Rru_A0461 0.57 -0.0
541,258 + Rru_A0461 0.57 +0.2
541,259 - Rru_A0461 0.57 -0.3
541,259 - Rru_A0461 0.57 +0.2
541,259 - Rru_A0461 0.57 -0.0
541,321 + Rru_A0461 0.64 -0.1
541,321 + Rru_A0461 0.64 +0.0
541,321 + Rru_A0461 0.64 +0.8
541,321 + Rru_A0461 0.64 -0.2
541,322 - Rru_A0461 0.64 -0.1
541,322 - Rru_A0461 0.64 +0.0
541,322 - Rru_A0461 0.64 -0.2
541,322 - Rru_A0461 0.64 +0.3
541,322 - Rru_A0461 0.64 +0.2
541,322 - Rru_A0461 0.64 +0.1
541,327 + Rru_A0461 0.65 -0.3
541,327 + Rru_A0461 0.65 +0.2
541,327 + Rru_A0461 0.65 +0.2
541,639 + -0.0
541,640 - -0.3

Or see this region's nucleotide sequence