Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.976.1 and Xcc-8004.977.1 are separated by 173 nucleotides Xcc-8004.977.1 and Xcc-8004.978.1 are separated by 64 nucleotides Xcc-8004.978.1 and Xcc-8004.979.1 are separated by 95 nucleotides
Xcc-8004.976.1: Xcc-8004.976.1 - FIG01209789: hypothetical protein, at 927,674 to 928,771
Xcc-8004.976.1
Xcc-8004.977.1: Xcc-8004.977.1 - hypothetical protein, at 928,945 to 929,451
Xcc-8004.977.1
Xcc-8004.978.1: Xcc-8004.978.1 - C4-dicarboxylate transporter/malic acid transport protein, at 929,516 to 930,697
Xcc-8004.978.1
Xcc-8004.979.1: Xcc-8004.979.1 - LysR family transcriptional regulator YeiE, at 930,793 to 931,707
Xcc-8004.979.1
Position (kb) 929
930
931 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 928.556 kb on + strand, within Xcc-8004.976.1 at 928.557 kb on - strand, within Xcc-8004.976.1 at 928.557 kb on - strand, within Xcc-8004.976.1 at 928.557 kb on - strand, within Xcc-8004.976.1 at 928.557 kb on - strand, within Xcc-8004.976.1 at 928.562 kb on + strand, within Xcc-8004.976.1 at 928.562 kb on + strand, within Xcc-8004.976.1 at 928.562 kb on + strand, within Xcc-8004.976.1 at 928.563 kb on - strand, within Xcc-8004.976.1 at 928.563 kb on - strand, within Xcc-8004.976.1 at 928.563 kb on - strand, within Xcc-8004.976.1 at 928.563 kb on - strand, within Xcc-8004.976.1 at 928.563 kb on - strand, within Xcc-8004.976.1 at 928.563 kb on - strand, within Xcc-8004.976.1 at 928.658 kb on + strand, within Xcc-8004.976.1 at 928.658 kb on + strand, within Xcc-8004.976.1 at 928.658 kb on + strand, within Xcc-8004.976.1 at 928.658 kb on + strand, within Xcc-8004.976.1 at 928.659 kb on - strand, within Xcc-8004.976.1 at 928.659 kb on - strand, within Xcc-8004.976.1 at 928.790 kb on + strand at 928.790 kb on + strand at 928.814 kb on - strand at 928.814 kb on - strand at 928.814 kb on - strand at 928.928 kb on + strand at 928.929 kb on - strand at 928.929 kb on - strand at 929.101 kb on - strand, within Xcc-8004.977.1 at 929.166 kb on + strand, within Xcc-8004.977.1 at 929.166 kb on + strand, within Xcc-8004.977.1 at 929.166 kb on + strand, within Xcc-8004.977.1 at 929.167 kb on - strand, within Xcc-8004.977.1 at 929.167 kb on - strand, within Xcc-8004.977.1 at 929.167 kb on - strand, within Xcc-8004.977.1 at 929.177 kb on + strand, within Xcc-8004.977.1 at 929.178 kb on - strand, within Xcc-8004.977.1 at 929.512 kb on + strand at 929.512 kb on + strand at 929.512 kb on + strand at 929.513 kb on - strand at 929.627 kb on + strand at 929.643 kb on - strand, within Xcc-8004.978.1 at 929.643 kb on - strand, within Xcc-8004.978.1 at 929.643 kb on - strand, within Xcc-8004.978.1 at 929.655 kb on - strand, within Xcc-8004.978.1 at 929.773 kb on - strand, within Xcc-8004.978.1 at 929.921 kb on + strand, within Xcc-8004.978.1 at 929.921 kb on + strand, within Xcc-8004.978.1 at 929.922 kb on - strand, within Xcc-8004.978.1 at 930.060 kb on + strand, within Xcc-8004.978.1 at 930.177 kb on - strand, within Xcc-8004.978.1 at 930.183 kb on - strand, within Xcc-8004.978.1 at 930.183 kb on - strand, within Xcc-8004.978.1 at 930.220 kb on + strand, within Xcc-8004.978.1 at 930.232 kb on - strand, within Xcc-8004.978.1 at 930.330 kb on + strand, within Xcc-8004.978.1 at 930.331 kb on - strand, within Xcc-8004.978.1 at 930.331 kb on - strand, within Xcc-8004.978.1 at 930.373 kb on + strand, within Xcc-8004.978.1 at 930.373 kb on + strand, within Xcc-8004.978.1 at 930.453 kb on + strand, within Xcc-8004.978.1 at 930.453 kb on + strand, within Xcc-8004.978.1 at 930.454 kb on - strand, within Xcc-8004.978.1 at 930.454 kb on - strand, within Xcc-8004.978.1 at 930.454 kb on - strand, within Xcc-8004.978.1 at 930.454 kb on - strand, within Xcc-8004.978.1 at 930.728 kb on + strand at 930.728 kb on + strand at 930.729 kb on - strand at 930.729 kb on - strand at 930.760 kb on + strand at 930.772 kb on + strand at 930.926 kb on + strand, within Xcc-8004.979.1 at 930.926 kb on + strand, within Xcc-8004.979.1 at 930.927 kb on - strand, within Xcc-8004.979.1 at 930.927 kb on - strand, within Xcc-8004.979.1 at 931.108 kb on + strand, within Xcc-8004.979.1 at 931.108 kb on + strand, within Xcc-8004.979.1 at 931.109 kb on - strand, within Xcc-8004.979.1 at 931.109 kb on - strand, within Xcc-8004.979.1 at 931.140 kb on + strand, within Xcc-8004.979.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 928,556 + Xcc-8004.976.1 0.80 +0.5 928,557 - Xcc-8004.976.1 0.80 +1.4 928,557 - Xcc-8004.976.1 0.80 +0.9 928,557 - Xcc-8004.976.1 0.80 +1.9 928,557 - Xcc-8004.976.1 0.80 +0.1 928,562 + Xcc-8004.976.1 0.81 +0.2 928,562 + Xcc-8004.976.1 0.81 -0.7 928,562 + Xcc-8004.976.1 0.81 -0.9 928,563 - Xcc-8004.976.1 0.81 -0.1 928,563 - Xcc-8004.976.1 0.81 -0.8 928,563 - Xcc-8004.976.1 0.81 -1.7 928,563 - Xcc-8004.976.1 0.81 +0.7 928,563 - Xcc-8004.976.1 0.81 -1.2 928,563 - Xcc-8004.976.1 0.81 -0.2 928,658 + Xcc-8004.976.1 0.90 -0.6 928,658 + Xcc-8004.976.1 0.90 -2.4 928,658 + Xcc-8004.976.1 0.90 -0.2 928,658 + Xcc-8004.976.1 0.90 +0.2 928,659 - Xcc-8004.976.1 0.90 +0.7 928,659 - Xcc-8004.976.1 0.90 +3.9 928,790 + +0.3 928,790 + -0.6 928,814 - -0.6 928,814 - +0.2 928,814 - +1.1 928,928 + -0.1 928,929 - -0.1 928,929 - +2.6 929,101 - Xcc-8004.977.1 0.31 +1.9 929,166 + Xcc-8004.977.1 0.44 +0.3 929,166 + Xcc-8004.977.1 0.44 +1.9 929,166 + Xcc-8004.977.1 0.44 +1.3 929,167 - Xcc-8004.977.1 0.44 +0.0 929,167 - Xcc-8004.977.1 0.44 +1.0 929,167 - Xcc-8004.977.1 0.44 -0.9 929,177 + Xcc-8004.977.1 0.46 -0.1 929,178 - Xcc-8004.977.1 0.46 -0.4 929,512 + +1.4 929,512 + -0.3 929,512 + +0.4 929,513 - +0.5 929,627 + -0.2 929,643 - Xcc-8004.978.1 0.11 +2.0 929,643 - Xcc-8004.978.1 0.11 +0.3 929,643 - Xcc-8004.978.1 0.11 -0.1 929,655 - Xcc-8004.978.1 0.12 -0.2 929,773 - Xcc-8004.978.1 0.22 +0.1 929,921 + Xcc-8004.978.1 0.34 +0.4 929,921 + Xcc-8004.978.1 0.34 +0.4 929,922 - Xcc-8004.978.1 0.34 +0.4 930,060 + Xcc-8004.978.1 0.46 +1.0 930,177 - Xcc-8004.978.1 0.56 +0.1 930,183 - Xcc-8004.978.1 0.56 +0.1 930,183 - Xcc-8004.978.1 0.56 +0.5 930,220 + Xcc-8004.978.1 0.60 -3.1 930,232 - Xcc-8004.978.1 0.61 -0.3 930,330 + Xcc-8004.978.1 0.69 -1.3 930,331 - Xcc-8004.978.1 0.69 -0.4 930,331 - Xcc-8004.978.1 0.69 +0.1 930,373 + Xcc-8004.978.1 0.73 -1.0 930,373 + Xcc-8004.978.1 0.73 +0.5 930,453 + Xcc-8004.978.1 0.79 +0.1 930,453 + Xcc-8004.978.1 0.79 -2.0 930,454 - Xcc-8004.978.1 0.79 -0.5 930,454 - Xcc-8004.978.1 0.79 +0.2 930,454 - Xcc-8004.978.1 0.79 -0.3 930,454 - Xcc-8004.978.1 0.79 -2.4 930,728 + -0.3 930,728 + +2.6 930,729 - +0.9 930,729 - +1.6 930,760 + -1.2 930,772 + -1.1 930,926 + Xcc-8004.979.1 0.15 -0.1 930,926 + Xcc-8004.979.1 0.15 -0.2 930,927 - Xcc-8004.979.1 0.15 +0.7 930,927 - Xcc-8004.979.1 0.15 +0.6 931,108 + Xcc-8004.979.1 0.34 +0.3 931,108 + Xcc-8004.979.1 0.34 +1.6 931,109 - Xcc-8004.979.1 0.35 +0.7 931,109 - Xcc-8004.979.1 0.35 +2.1 931,140 + Xcc-8004.979.1 0.38 -1.7
Or see this region's nucleotide sequence