Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.930.1 and Xcc-8004.931.1 overlap by 4 nucleotides Xcc-8004.931.1 and Xcc-8004.932.1 are separated by 3 nucleotides Xcc-8004.932.1 and Xcc-8004.933.1 are separated by 101 nucleotides Xcc-8004.933.1 and Xcc-8004.934.1 are separated by 6 nucleotides
Xcc-8004.930.1: Xcc-8004.930.1 - Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-), at 873,023 to 874,834
Xcc-8004.930.1
Xcc-8004.931.1: Xcc-8004.931.1 - Two-component system regulatory protein, at 874,831 to 875,271
Xcc-8004.931.1
Xcc-8004.932.1: Xcc-8004.932.1 - histidine kinase/response regulator hybrid protein, at 875,275 to 876,777
Xcc-8004.932.1
Xcc-8004.933.1: Xcc-8004.933.1 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3), at 876,879 to 877,376
Xcc-8004.933.1
Xcc-8004.934.1: Xcc-8004.934.1 - FolM Alternative dihydrofolate reductase 1, at 877,383 to 878,120
Xcc-8004.934.1
Position (kb) 875
876
877 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 874.310 kb on + strand, within Xcc-8004.930.1 at 874.310 kb on + strand, within Xcc-8004.930.1 at 874.311 kb on - strand, within Xcc-8004.930.1 at 874.311 kb on - strand, within Xcc-8004.930.1 at 874.311 kb on - strand, within Xcc-8004.930.1 at 874.311 kb on - strand, within Xcc-8004.930.1 at 874.311 kb on - strand, within Xcc-8004.930.1 at 874.520 kb on + strand, within Xcc-8004.930.1 at 874.520 kb on + strand, within Xcc-8004.930.1 at 874.521 kb on - strand, within Xcc-8004.930.1 at 874.521 kb on - strand, within Xcc-8004.930.1 at 874.586 kb on + strand, within Xcc-8004.930.1 at 874.587 kb on - strand, within Xcc-8004.930.1 at 874.587 kb on - strand, within Xcc-8004.930.1 at 874.830 kb on + strand at 874.830 kb on + strand at 874.830 kb on + strand at 874.831 kb on - strand at 874.845 kb on + strand at 874.846 kb on - strand at 874.963 kb on + strand, within Xcc-8004.931.1 at 874.963 kb on + strand, within Xcc-8004.931.1 at 874.963 kb on + strand, within Xcc-8004.931.1 at 874.964 kb on - strand, within Xcc-8004.931.1 at 874.964 kb on - strand, within Xcc-8004.931.1 at 875.173 kb on + strand, within Xcc-8004.931.1 at 875.173 kb on + strand, within Xcc-8004.931.1 at 875.173 kb on + strand, within Xcc-8004.931.1 at 875.173 kb on + strand, within Xcc-8004.931.1 at 875.173 kb on + strand, within Xcc-8004.931.1 at 875.173 kb on + strand, within Xcc-8004.931.1 at 875.173 kb on + strand, within Xcc-8004.931.1 at 875.174 kb on - strand, within Xcc-8004.931.1 at 875.174 kb on - strand, within Xcc-8004.931.1 at 875.174 kb on - strand, within Xcc-8004.931.1 at 875.174 kb on - strand, within Xcc-8004.931.1 at 875.448 kb on + strand, within Xcc-8004.932.1 at 875.599 kb on + strand, within Xcc-8004.932.1 at 875.599 kb on + strand, within Xcc-8004.932.1 at 875.599 kb on + strand, within Xcc-8004.932.1 at 875.599 kb on + strand, within Xcc-8004.932.1 at 875.599 kb on + strand, within Xcc-8004.932.1 at 875.599 kb on + strand, within Xcc-8004.932.1 at 875.599 kb on + strand, within Xcc-8004.932.1 at 875.600 kb on - strand, within Xcc-8004.932.1 at 875.600 kb on - strand, within Xcc-8004.932.1 at 875.600 kb on - strand, within Xcc-8004.932.1 at 875.600 kb on - strand, within Xcc-8004.932.1 at 876.046 kb on + strand, within Xcc-8004.932.1 at 876.046 kb on + strand, within Xcc-8004.932.1 at 876.046 kb on + strand, within Xcc-8004.932.1 at 876.046 kb on + strand, within Xcc-8004.932.1 at 876.046 kb on + strand, within Xcc-8004.932.1 at 876.046 kb on + strand, within Xcc-8004.932.1 at 876.047 kb on - strand, within Xcc-8004.932.1 at 876.047 kb on - strand, within Xcc-8004.932.1 at 876.047 kb on - strand, within Xcc-8004.932.1 at 876.289 kb on + strand, within Xcc-8004.932.1 at 876.628 kb on + strand at 876.697 kb on - strand at 876.812 kb on + strand at 876.812 kb on + strand at 876.813 kb on - strand at 876.813 kb on - strand at 876.982 kb on - strand, within Xcc-8004.933.1 at 877.375 kb on - strand at 877.418 kb on + strand at 877.419 kb on - strand at 877.419 kb on - strand at 877.419 kb on - strand at 877.657 kb on + strand, within Xcc-8004.934.1 at 877.658 kb on - strand, within Xcc-8004.934.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 874,310 + Xcc-8004.930.1 0.71 +0.3 874,310 + Xcc-8004.930.1 0.71 +5.5 874,311 - Xcc-8004.930.1 0.71 +1.0 874,311 - Xcc-8004.930.1 0.71 -0.2 874,311 - Xcc-8004.930.1 0.71 +2.8 874,311 - Xcc-8004.930.1 0.71 +2.0 874,311 - Xcc-8004.930.1 0.71 -1.3 874,520 + Xcc-8004.930.1 0.83 +2.3 874,520 + Xcc-8004.930.1 0.83 +0.2 874,521 - Xcc-8004.930.1 0.83 +2.6 874,521 - Xcc-8004.930.1 0.83 +4.0 874,586 + Xcc-8004.930.1 0.86 +3.7 874,587 - Xcc-8004.930.1 0.86 -0.9 874,587 - Xcc-8004.930.1 0.86 +1.8 874,830 + -2.0 874,830 + -1.2 874,830 + +0.5 874,831 - +2.3 874,845 + -1.4 874,846 - -1.2 874,963 + Xcc-8004.931.1 0.30 -1.2 874,963 + Xcc-8004.931.1 0.30 -0.5 874,963 + Xcc-8004.931.1 0.30 +1.2 874,964 - Xcc-8004.931.1 0.30 +0.4 874,964 - Xcc-8004.931.1 0.30 +2.6 875,173 + Xcc-8004.931.1 0.78 -1.3 875,173 + Xcc-8004.931.1 0.78 -0.9 875,173 + Xcc-8004.931.1 0.78 +0.2 875,173 + Xcc-8004.931.1 0.78 -3.5 875,173 + Xcc-8004.931.1 0.78 -0.9 875,173 + Xcc-8004.931.1 0.78 +0.2 875,173 + Xcc-8004.931.1 0.78 -0.9 875,174 - Xcc-8004.931.1 0.78 +1.1 875,174 - Xcc-8004.931.1 0.78 +1.9 875,174 - Xcc-8004.931.1 0.78 -1.9 875,174 - Xcc-8004.931.1 0.78 +1.7 875,448 + Xcc-8004.932.1 0.12 -0.6 875,599 + Xcc-8004.932.1 0.22 +0.4 875,599 + Xcc-8004.932.1 0.22 +1.9 875,599 + Xcc-8004.932.1 0.22 +1.9 875,599 + Xcc-8004.932.1 0.22 +1.3 875,599 + Xcc-8004.932.1 0.22 +2.5 875,599 + Xcc-8004.932.1 0.22 -0.1 875,599 + Xcc-8004.932.1 0.22 +3.3 875,600 - Xcc-8004.932.1 0.22 +5.1 875,600 - Xcc-8004.932.1 0.22 +4.2 875,600 - Xcc-8004.932.1 0.22 +1.1 875,600 - Xcc-8004.932.1 0.22 +1.1 876,046 + Xcc-8004.932.1 0.51 +1.7 876,046 + Xcc-8004.932.1 0.51 +2.8 876,046 + Xcc-8004.932.1 0.51 +5.3 876,046 + Xcc-8004.932.1 0.51 +1.5 876,046 + Xcc-8004.932.1 0.51 +1.2 876,046 + Xcc-8004.932.1 0.51 +1.1 876,047 - Xcc-8004.932.1 0.51 +3.7 876,047 - Xcc-8004.932.1 0.51 +3.0 876,047 - Xcc-8004.932.1 0.51 -1.9 876,289 + Xcc-8004.932.1 0.67 +3.8 876,628 + +1.3 876,697 - +1.1 876,812 + -0.7 876,812 + -0.5 876,813 - +4.0 876,813 - +2.3 876,982 - Xcc-8004.933.1 0.21 +0.9 877,375 - -1.2 877,418 + -0.5 877,419 - +1.3 877,419 - -1.0 877,419 - -0.4 877,657 + Xcc-8004.934.1 0.37 -0.0 877,658 - Xcc-8004.934.1 0.37 -0.2
Or see this region's nucleotide sequence