Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.789.1 and Xcc-8004.790.1 are separated by 353 nucleotides Xcc-8004.790.1 and Xcc-8004.791.1 are separated by 38 nucleotides Xcc-8004.791.1 and Xcc-8004.792.1 are separated by 190 nucleotides
Xcc-8004.789.1: Xcc-8004.789.1 - Thioredoxin reductase (EC 1.8.1.9), at 734,140 to 735,039
Xcc-8004.789.1
Xcc-8004.790.1: Xcc-8004.790.1 - putative; ORF located using Glimmer/Genemark, at 735,393 to 736,244
Xcc-8004.790.1
Xcc-8004.791.1: Xcc-8004.791.1 - FIG01211375: hypothetical protein, at 736,283 to 736,594
Xcc-8004.791.1
Xcc-8004.792.1: Xcc-8004.792.1 - FIG01211403: hypothetical protein, at 736,785 to 737,423
Xcc-8004.792.1
Position (kb) 735
736
737 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 734.548 kb on + strand, within Xcc-8004.789.1 at 734.549 kb on - strand, within Xcc-8004.789.1 at 734.568 kb on + strand, within Xcc-8004.789.1 at 734.568 kb on + strand, within Xcc-8004.789.1 at 734.568 kb on + strand, within Xcc-8004.789.1 at 734.568 kb on + strand, within Xcc-8004.789.1 at 734.568 kb on + strand, within Xcc-8004.789.1 at 734.569 kb on - strand, within Xcc-8004.789.1 at 734.569 kb on - strand, within Xcc-8004.789.1 at 734.569 kb on - strand, within Xcc-8004.789.1 at 734.569 kb on - strand, within Xcc-8004.789.1 at 734.690 kb on + strand, within Xcc-8004.789.1 at 734.690 kb on + strand, within Xcc-8004.789.1 at 734.691 kb on - strand, within Xcc-8004.789.1 at 734.691 kb on - strand, within Xcc-8004.789.1 at 734.691 kb on - strand, within Xcc-8004.789.1 at 734.885 kb on + strand, within Xcc-8004.789.1 at 734.885 kb on + strand, within Xcc-8004.789.1 at 734.886 kb on - strand, within Xcc-8004.789.1 at 734.886 kb on - strand, within Xcc-8004.789.1 at 735.090 kb on + strand at 735.101 kb on - strand at 735.129 kb on + strand at 735.129 kb on + strand at 735.130 kb on - strand at 735.170 kb on + strand at 735.171 kb on - strand at 735.171 kb on - strand at 735.171 kb on - strand at 735.202 kb on - strand at 735.282 kb on - strand at 735.291 kb on - strand at 735.291 kb on - strand at 735.292 kb on + strand at 735.306 kb on - strand at 735.423 kb on - strand at 735.423 kb on - strand at 735.672 kb on - strand, within Xcc-8004.790.1 at 735.824 kb on + strand, within Xcc-8004.790.1 at 736.103 kb on + strand, within Xcc-8004.790.1 at 736.103 kb on + strand, within Xcc-8004.790.1 at 736.104 kb on - strand, within Xcc-8004.790.1 at 736.106 kb on + strand, within Xcc-8004.790.1 at 736.106 kb on + strand, within Xcc-8004.790.1 at 736.279 kb on + strand at 736.371 kb on + strand, within Xcc-8004.791.1 at 736.371 kb on + strand, within Xcc-8004.791.1 at 736.436 kb on + strand, within Xcc-8004.791.1 at 736.436 kb on + strand, within Xcc-8004.791.1 at 736.437 kb on - strand, within Xcc-8004.791.1 at 736.470 kb on + strand, within Xcc-8004.791.1 at 736.500 kb on - strand, within Xcc-8004.791.1 at 736.734 kb on + strand at 736.734 kb on + strand at 736.734 kb on + strand at 736.844 kb on - strand at 736.850 kb on - strand, within Xcc-8004.792.1 at 737.056 kb on - strand, within Xcc-8004.792.1 at 737.056 kb on - strand, within Xcc-8004.792.1 at 737.056 kb on - strand, within Xcc-8004.792.1 at 737.096 kb on - strand, within Xcc-8004.792.1 at 737.096 kb on - strand, within Xcc-8004.792.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 734,548 + Xcc-8004.789.1 0.45 +1.0 734,549 - Xcc-8004.789.1 0.45 +1.3 734,568 + Xcc-8004.789.1 0.48 -0.1 734,568 + Xcc-8004.789.1 0.48 -1.9 734,568 + Xcc-8004.789.1 0.48 -0.9 734,568 + Xcc-8004.789.1 0.48 +0.7 734,568 + Xcc-8004.789.1 0.48 +2.1 734,569 - Xcc-8004.789.1 0.48 +1.9 734,569 - Xcc-8004.789.1 0.48 -1.5 734,569 - Xcc-8004.789.1 0.48 -0.0 734,569 - Xcc-8004.789.1 0.48 +1.0 734,690 + Xcc-8004.789.1 0.61 +1.9 734,690 + Xcc-8004.789.1 0.61 +2.2 734,691 - Xcc-8004.789.1 0.61 +0.3 734,691 - Xcc-8004.789.1 0.61 +1.0 734,691 - Xcc-8004.789.1 0.61 -0.6 734,885 + Xcc-8004.789.1 0.83 +2.0 734,885 + Xcc-8004.789.1 0.83 -0.4 734,886 - Xcc-8004.789.1 0.83 -0.2 734,886 - Xcc-8004.789.1 0.83 +0.1 735,090 + +0.4 735,101 - +0.4 735,129 + +0.9 735,129 + +1.3 735,130 - +0.5 735,170 + -1.6 735,171 - +0.2 735,171 - -0.7 735,171 - +0.1 735,202 - -2.6 735,282 - +0.5 735,291 - -0.5 735,291 - +1.1 735,292 + +1.3 735,306 - +2.0 735,423 - -2.9 735,423 - -1.1 735,672 - Xcc-8004.790.1 0.33 -1.7 735,824 + Xcc-8004.790.1 0.51 +1.3 736,103 + Xcc-8004.790.1 0.83 -1.4 736,103 + Xcc-8004.790.1 0.83 +0.7 736,104 - Xcc-8004.790.1 0.83 -2.3 736,106 + Xcc-8004.790.1 0.84 -0.3 736,106 + Xcc-8004.790.1 0.84 -3.2 736,279 + -1.4 736,371 + Xcc-8004.791.1 0.28 +0.3 736,371 + Xcc-8004.791.1 0.28 -0.1 736,436 + Xcc-8004.791.1 0.49 -0.7 736,436 + Xcc-8004.791.1 0.49 -1.1 736,437 - Xcc-8004.791.1 0.49 -0.4 736,470 + Xcc-8004.791.1 0.60 +0.2 736,500 - Xcc-8004.791.1 0.70 +2.6 736,734 + -0.2 736,734 + -0.5 736,734 + +0.7 736,844 - +0.2 736,850 - Xcc-8004.792.1 0.10 -1.2 737,056 - Xcc-8004.792.1 0.42 +1.2 737,056 - Xcc-8004.792.1 0.42 -1.2 737,056 - Xcc-8004.792.1 0.42 -0.7 737,096 - Xcc-8004.792.1 0.49 -1.7 737,096 - Xcc-8004.792.1 0.49 -0.3
Or see this region's nucleotide sequence