Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.744.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.743.1 and Xcc-8004.744.1 are separated by 79 nucleotides Xcc-8004.743.1: Xcc-8004.743.1 - Dicarboxylate carrier protein, at 691,095 to 692,450 Xcc-8004.743.1 Xcc-8004.744.1: Xcc-8004.744.1 - Predicted regulator PutR for proline utilization, GntR family, at 692,530 to 693,249 Xcc-8004.744.1 Position (kb) 692 693 694Strain fitness (log2 ratio) -2 -1 0 1 2 3at 691.731 kb on + strand, within Xcc-8004.743.1at 691.732 kb on - strand, within Xcc-8004.743.1at 691.732 kb on - strand, within Xcc-8004.743.1at 691.918 kb on - strand, within Xcc-8004.743.1at 692.049 kb on + strand, within Xcc-8004.743.1at 692.049 kb on + strand, within Xcc-8004.743.1at 692.049 kb on + strand, within Xcc-8004.743.1at 692.049 kb on + strand, within Xcc-8004.743.1at 692.050 kb on - strand, within Xcc-8004.743.1at 692.050 kb on - strand, within Xcc-8004.743.1at 692.050 kb on - strand, within Xcc-8004.743.1at 692.050 kb on - strand, within Xcc-8004.743.1at 692.050 kb on - strand, within Xcc-8004.743.1at 692.050 kb on - strand, within Xcc-8004.743.1at 692.050 kb on - strand, within Xcc-8004.743.1at 692.050 kb on - strand, within Xcc-8004.743.1at 692.085 kb on + strand, within Xcc-8004.743.1at 692.085 kb on + strand, within Xcc-8004.743.1at 692.086 kb on - strand, within Xcc-8004.743.1at 692.086 kb on - strand, within Xcc-8004.743.1at 692.086 kb on - strand, within Xcc-8004.743.1at 692.145 kb on + strand, within Xcc-8004.743.1at 692.145 kb on + strand, within Xcc-8004.743.1at 692.146 kb on - strand, within Xcc-8004.743.1at 692.146 kb on - strand, within Xcc-8004.743.1at 692.146 kb on - strand, within Xcc-8004.743.1at 692.379 kb on + strandat 692.379 kb on + strandat 692.379 kb on + strandat 692.379 kb on + strandat 692.379 kb on + strandat 692.380 kb on - strandat 692.380 kb on - strandat 692.380 kb on - strandat 692.380 kb on - strandat 692.392 kb on + strandat 692.392 kb on + strandat 692.393 kb on - strandat 692.488 kb on + strandat 692.489 kb on - strandat 692.489 kb on - strandat 692.579 kb on - strandat 692.614 kb on + strand, within Xcc-8004.744.1at 692.614 kb on + strand, within Xcc-8004.744.1at 692.614 kb on + strand, within Xcc-8004.744.1at 692.615 kb on - strand, within Xcc-8004.744.1at 692.615 kb on - strand, within Xcc-8004.744.1at 692.615 kb on - strand, within Xcc-8004.744.1at 692.620 kb on + strand, within Xcc-8004.744.1at 692.620 kb on + strand, within Xcc-8004.744.1at 692.620 kb on + strand, within Xcc-8004.744.1at 692.621 kb on - strand, within Xcc-8004.744.1at 692.932 kb on + strand, within Xcc-8004.744.1at 692.932 kb on + strand, within Xcc-8004.744.1at 692.932 kb on + strand, within Xcc-8004.744.1at 692.933 kb on - strand, within Xcc-8004.744.1at 692.933 kb on - strand, within Xcc-8004.744.1at 692.935 kb on + strand, within Xcc-8004.744.1at 692.935 kb on + strand, within Xcc-8004.744.1at 692.936 kb on - strand, within Xcc-8004.744.1at 692.936 kb on - strand, within Xcc-8004.744.1at 692.936 kb on - strand, within Xcc-8004.744.1at 692.947 kb on + strand, within Xcc-8004.744.1at 692.947 kb on + strand, within Xcc-8004.744.1at 692.947 kb on + strand, within Xcc-8004.744.1at 692.948 kb on - strand, within Xcc-8004.744.1at 692.948 kb on - strand, within Xcc-8004.744.1at 692.975 kb on - strand, within Xcc-8004.744.1at 692.975 kb on - strand, within Xcc-8004.744.1at 692.975 kb on - strand, within Xcc-8004.744.1at 693.187 kb on + strandat 693.187 kb on + strandat 693.187 kb on + strandat 693.188 kb on - strandat 693.188 kb on - strandat 693.344 kb on - strandat 693.358 kb on + strandat 693.358 kb on + strandat 693.358 kb on + strandat 693.614 kb on + strandat 693.872 kb on + strandat 693.872 kb on + strandat 693.938 kb on + strandat 693.939 kb on - strandat 693.955 kb on - strandat 693.982 kb on + strandat 693.982 kb on + strandat 693.982 kb on + strandat 693.983 kb on - strandat 693.983 kb on - strandat 693.983 kb on - strandat 694.001 kb on + strandat 694.002 kb on - strandat 694.002 kb on - strandat 694.058 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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691,731 + Xcc-8004.743.1 0.47 +0.4
691,732 - Xcc-8004.743.1 0.47 +1.7
691,732 - Xcc-8004.743.1 0.47 +0.3
691,918 - Xcc-8004.743.1 0.61 +0.5
692,049 + Xcc-8004.743.1 0.70 -0.3
692,049 + Xcc-8004.743.1 0.70 +0.6
692,049 + Xcc-8004.743.1 0.70 +0.2
692,049 + Xcc-8004.743.1 0.70 +1.5
692,050 - Xcc-8004.743.1 0.70 +0.9
692,050 - Xcc-8004.743.1 0.70 -0.2
692,050 - Xcc-8004.743.1 0.70 -0.3
692,050 - Xcc-8004.743.1 0.70 +0.3
692,050 - Xcc-8004.743.1 0.70 +0.5
692,050 - Xcc-8004.743.1 0.70 +1.6
692,050 - Xcc-8004.743.1 0.70 -0.7
692,050 - Xcc-8004.743.1 0.70 +0.1
692,085 + Xcc-8004.743.1 0.73 +1.6
692,085 + Xcc-8004.743.1 0.73 +0.1
692,086 - Xcc-8004.743.1 0.73 +2.2
692,086 - Xcc-8004.743.1 0.73 +1.2
692,086 - Xcc-8004.743.1 0.73 +0.1
692,145 + Xcc-8004.743.1 0.77 -1.0
692,145 + Xcc-8004.743.1 0.77 -0.1
692,146 - Xcc-8004.743.1 0.78 +0.5
692,146 - Xcc-8004.743.1 0.78 +0.4
692,146 - Xcc-8004.743.1 0.78 -0.0
692,379 + -1.7
692,379 + +0.1
692,379 + +0.4
692,379 + +0.3
692,379 + -0.3
692,380 - -1.2
692,380 - -0.6
692,380 - +0.3
692,380 - +0.9
692,392 + -2.3
692,392 + -1.9
692,393 - +0.3
692,488 + -0.5
692,489 - -1.3
692,489 - +1.0
692,579 - -1.2
692,614 + Xcc-8004.744.1 0.12 -1.9
692,614 + Xcc-8004.744.1 0.12 +0.4
692,614 + Xcc-8004.744.1 0.12 +0.1
692,615 - Xcc-8004.744.1 0.12 +0.9
692,615 - Xcc-8004.744.1 0.12 -0.6
692,615 - Xcc-8004.744.1 0.12 +0.9
692,620 + Xcc-8004.744.1 0.12 +1.7
692,620 + Xcc-8004.744.1 0.12 +1.6
692,620 + Xcc-8004.744.1 0.12 -1.1
692,621 - Xcc-8004.744.1 0.13 +2.7
692,932 + Xcc-8004.744.1 0.56 +3.2
692,932 + Xcc-8004.744.1 0.56 +0.3
692,932 + Xcc-8004.744.1 0.56 -0.4
692,933 - Xcc-8004.744.1 0.56 -1.5
692,933 - Xcc-8004.744.1 0.56 +2.1
692,935 + Xcc-8004.744.1 0.56 -0.1
692,935 + Xcc-8004.744.1 0.56 -1.9
692,936 - Xcc-8004.744.1 0.56 -0.1
692,936 - Xcc-8004.744.1 0.56 -0.7
692,936 - Xcc-8004.744.1 0.56 +1.3
692,947 + Xcc-8004.744.1 0.58 -0.8
692,947 + Xcc-8004.744.1 0.58 +1.4
692,947 + Xcc-8004.744.1 0.58 +0.1
692,948 - Xcc-8004.744.1 0.58 +0.6
692,948 - Xcc-8004.744.1 0.58 -1.0
692,975 - Xcc-8004.744.1 0.62 +0.9
692,975 - Xcc-8004.744.1 0.62 +0.1
692,975 - Xcc-8004.744.1 0.62 +0.8
693,187 + +0.4
693,187 + -1.0
693,187 + +0.4
693,188 - -0.3
693,188 - +0.6
693,344 - +0.3
693,358 + -0.8
693,358 + -1.6
693,358 + -1.6
693,614 + +1.6
693,872 + +0.4
693,872 + -1.6
693,938 + -0.3
693,939 - -0.7
693,955 - +1.2
693,982 + +0.6
693,982 + +0.2
693,982 + -2.0
693,983 - -1.3
693,983 - +0.3
693,983 - +1.0
694,001 + -1.6
694,002 - +0.2
694,002 - +0.3
694,058 - -1.3

Or see this region's nucleotide sequence