Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4262.1 and Xcc-8004.4263.1 are separated by 106 nucleotides Xcc-8004.4263.1 and Xcc-8004.4264.1 are separated by 1 nucleotides Xcc-8004.4264.1 and Xcc-8004.4265.1 are separated by 41 nucleotides
Xcc-8004.4262.1: Xcc-8004.4262.1 - 2-octaprenyl-6-methoxyphenol hydroxylase (EC 1.14.13.-), at 4,081,989 to 4,083,284
Xcc-8004.4262.1
Xcc-8004.4263.1: Xcc-8004.4263.1 - Optional hypothetical component of the B12 transporter BtuM, at 4,083,391 to 4,083,969
Xcc-8004.4263.1
Xcc-8004.4264.1: Xcc-8004.4264.1 - ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 4,083,971 to 4,084,528
Xcc-8004.4264.1
Xcc-8004.4265.1: Xcc-8004.4265.1 - acetoin utilization family protein, at 4,084,570 to 4,085,475
Xcc-8004.4265.1
Position (kb) 4083
4084 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.186 kb on + strand at 4083.187 kb on - strand at 4083.187 kb on - strand at 4083.187 kb on - strand at 4083.187 kb on - strand at 4083.187 kb on - strand at 4083.187 kb on - strand at 4083.187 kb on - strand at 4083.187 kb on - strand at 4083.187 kb on - strand at 4083.187 kb on - strand at 4083.187 kb on - strand at 4083.187 kb on - strand at 4083.187 kb on - strand at 4083.208 kb on + strand at 4083.208 kb on + strand at 4083.208 kb on + strand at 4083.208 kb on + strand at 4083.208 kb on + strand at 4083.208 kb on + strand at 4083.208 kb on + strand at 4083.209 kb on - strand at 4083.209 kb on - strand at 4083.209 kb on - strand at 4083.209 kb on - strand at 4083.209 kb on - strand at 4083.209 kb on - strand at 4083.209 kb on - strand at 4083.289 kb on + strand at 4083.290 kb on - strand at 4083.290 kb on - strand at 4083.355 kb on + strand at 4083.356 kb on - strand at 4083.356 kb on - strand at 4083.371 kb on + strand at 4083.372 kb on - strand at 4083.622 kb on + strand, within Xcc-8004.4263.1 at 4083.622 kb on + strand, within Xcc-8004.4263.1 at 4083.622 kb on + strand, within Xcc-8004.4263.1 at 4083.622 kb on + strand, within Xcc-8004.4263.1 at 4083.622 kb on + strand, within Xcc-8004.4263.1 at 4083.622 kb on + strand, within Xcc-8004.4263.1 at 4083.622 kb on + strand, within Xcc-8004.4263.1 at 4083.622 kb on + strand, within Xcc-8004.4263.1 at 4083.623 kb on - strand, within Xcc-8004.4263.1 at 4083.623 kb on - strand, within Xcc-8004.4263.1 at 4083.623 kb on - strand, within Xcc-8004.4263.1 at 4083.623 kb on - strand, within Xcc-8004.4263.1 at 4083.623 kb on - strand, within Xcc-8004.4263.1 at 4083.640 kb on + strand, within Xcc-8004.4263.1 at 4083.641 kb on - strand, within Xcc-8004.4263.1 at 4083.661 kb on + strand, within Xcc-8004.4263.1 at 4083.661 kb on + strand, within Xcc-8004.4263.1 at 4083.662 kb on - strand, within Xcc-8004.4263.1 at 4083.662 kb on - strand, within Xcc-8004.4263.1 at 4083.704 kb on - strand, within Xcc-8004.4263.1 at 4083.704 kb on - strand, within Xcc-8004.4263.1 at 4083.796 kb on + strand, within Xcc-8004.4263.1 at 4083.796 kb on + strand, within Xcc-8004.4263.1 at 4083.797 kb on - strand, within Xcc-8004.4263.1 at 4083.797 kb on - strand, within Xcc-8004.4263.1 at 4083.797 kb on - strand, within Xcc-8004.4263.1 at 4083.797 kb on - strand, within Xcc-8004.4263.1 at 4083.797 kb on - strand, within Xcc-8004.4263.1 at 4083.797 kb on - strand, within Xcc-8004.4263.1 at 4083.850 kb on + strand, within Xcc-8004.4263.1 at 4083.850 kb on + strand, within Xcc-8004.4263.1 at 4083.851 kb on - strand, within Xcc-8004.4263.1 at 4083.871 kb on + strand, within Xcc-8004.4263.1 at 4083.871 kb on + strand, within Xcc-8004.4263.1 at 4083.871 kb on + strand, within Xcc-8004.4263.1 at 4083.871 kb on + strand, within Xcc-8004.4263.1 at 4083.872 kb on - strand, within Xcc-8004.4263.1 at 4083.892 kb on + strand, within Xcc-8004.4263.1 at 4083.892 kb on + strand, within Xcc-8004.4263.1 at 4083.892 kb on + strand, within Xcc-8004.4263.1 at 4083.892 kb on + strand, within Xcc-8004.4263.1 at 4083.892 kb on + strand, within Xcc-8004.4263.1 at 4083.892 kb on + strand, within Xcc-8004.4263.1 at 4083.892 kb on + strand, within Xcc-8004.4263.1 at 4083.893 kb on - strand, within Xcc-8004.4263.1 at 4083.893 kb on - strand, within Xcc-8004.4263.1 at 4083.893 kb on - strand, within Xcc-8004.4263.1 at 4083.893 kb on - strand, within Xcc-8004.4263.1 at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.995 kb on + strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.996 kb on - strand at 4083.997 kb on + strand at 4083.997 kb on + strand at 4083.997 kb on + strand at 4083.997 kb on + strand at 4083.998 kb on - strand at 4083.998 kb on - strand at 4083.998 kb on - strand at 4083.998 kb on - strand at 4084.021 kb on + strand at 4084.039 kb on + strand, within Xcc-8004.4264.1 at 4084.040 kb on - strand, within Xcc-8004.4264.1 at 4084.040 kb on - strand, within Xcc-8004.4264.1 at 4084.076 kb on + strand, within Xcc-8004.4264.1 at 4084.555 kb on + strand at 4084.555 kb on + strand at 4084.555 kb on + strand at 4084.555 kb on + strand at 4084.555 kb on + strand at 4084.555 kb on + strand at 4084.555 kb on + strand at 4084.555 kb on + strand at 4084.555 kb on + strand at 4084.556 kb on - strand at 4084.556 kb on - strand at 4084.556 kb on - strand at 4084.556 kb on - strand at 4084.556 kb on - strand at 4084.556 kb on - strand at 4084.781 kb on - strand, within Xcc-8004.4265.1 at 4084.800 kb on + strand, within Xcc-8004.4265.1 at 4084.800 kb on + strand, within Xcc-8004.4265.1 at 4084.801 kb on - strand, within Xcc-8004.4265.1 at 4084.801 kb on - strand, within Xcc-8004.4265.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 4,083,186 + -0.9 4,083,186 + -1.3 4,083,186 + -1.0 4,083,186 + +0.7 4,083,186 + +0.9 4,083,186 + -2.1 4,083,186 + +2.8 4,083,186 + +2.9 4,083,186 + +0.6 4,083,186 + +0.3 4,083,186 + -1.7 4,083,186 + +0.9 4,083,186 + +0.6 4,083,186 + +0.3 4,083,186 + +0.9 4,083,186 + -0.9 4,083,186 + +1.8 4,083,186 + -1.1 4,083,186 + +0.0 4,083,186 + +1.9 4,083,186 + +1.3 4,083,186 + +1.2 4,083,186 + +0.4 4,083,187 - -1.1 4,083,187 - -0.6 4,083,187 - -0.2 4,083,187 - +1.0 4,083,187 - +1.8 4,083,187 - +0.0 4,083,187 - -2.3 4,083,187 - +1.4 4,083,187 - -0.1 4,083,187 - -0.2 4,083,187 - -0.2 4,083,187 - +0.1 4,083,187 - -2.7 4,083,208 + -0.7 4,083,208 + +0.5 4,083,208 + +1.4 4,083,208 + +0.8 4,083,208 + -1.2 4,083,208 + +0.5 4,083,208 + +0.7 4,083,209 - -1.9 4,083,209 - -2.0 4,083,209 - +1.3 4,083,209 - -1.7 4,083,209 - +1.0 4,083,209 - -0.5 4,083,209 - +0.7 4,083,289 + +0.6 4,083,290 - +0.4 4,083,290 - -1.8 4,083,355 + -1.5 4,083,356 - -0.7 4,083,356 - -0.8 4,083,371 + -0.5 4,083,372 - -1.3 4,083,622 + Xcc-8004.4263.1 0.40 -0.1 4,083,622 + Xcc-8004.4263.1 0.40 +1.2 4,083,622 + Xcc-8004.4263.1 0.40 +0.1 4,083,622 + Xcc-8004.4263.1 0.40 -1.2 4,083,622 + Xcc-8004.4263.1 0.40 +1.3 4,083,622 + Xcc-8004.4263.1 0.40 +0.6 4,083,622 + Xcc-8004.4263.1 0.40 +0.6 4,083,622 + Xcc-8004.4263.1 0.40 +1.7 4,083,623 - Xcc-8004.4263.1 0.40 -0.0 4,083,623 - Xcc-8004.4263.1 0.40 -0.2 4,083,623 - Xcc-8004.4263.1 0.40 +0.8 4,083,623 - Xcc-8004.4263.1 0.40 -2.0 4,083,623 - Xcc-8004.4263.1 0.40 +0.8 4,083,640 + Xcc-8004.4263.1 0.43 +0.4 4,083,641 - Xcc-8004.4263.1 0.43 +0.1 4,083,661 + Xcc-8004.4263.1 0.47 -0.2 4,083,661 + Xcc-8004.4263.1 0.47 -0.6 4,083,662 - Xcc-8004.4263.1 0.47 -0.6 4,083,662 - Xcc-8004.4263.1 0.47 -0.4 4,083,704 - Xcc-8004.4263.1 0.54 -1.7 4,083,704 - Xcc-8004.4263.1 0.54 +0.1 4,083,796 + Xcc-8004.4263.1 0.70 -0.9 4,083,796 + Xcc-8004.4263.1 0.70 -0.9 4,083,797 - Xcc-8004.4263.1 0.70 -1.1 4,083,797 - Xcc-8004.4263.1 0.70 +0.4 4,083,797 - Xcc-8004.4263.1 0.70 +2.9 4,083,797 - Xcc-8004.4263.1 0.70 +0.0 4,083,797 - Xcc-8004.4263.1 0.70 -0.2 4,083,797 - Xcc-8004.4263.1 0.70 -0.8 4,083,850 + Xcc-8004.4263.1 0.79 -0.7 4,083,850 + Xcc-8004.4263.1 0.79 -2.1 4,083,851 - Xcc-8004.4263.1 0.79 -1.2 4,083,871 + Xcc-8004.4263.1 0.83 -0.7 4,083,871 + Xcc-8004.4263.1 0.83 +1.3 4,083,871 + Xcc-8004.4263.1 0.83 -1.3 4,083,871 + Xcc-8004.4263.1 0.83 +0.7 4,083,872 - Xcc-8004.4263.1 0.83 -1.4 4,083,892 + Xcc-8004.4263.1 0.87 -0.1 4,083,892 + Xcc-8004.4263.1 0.87 -0.4 4,083,892 + Xcc-8004.4263.1 0.87 +1.2 4,083,892 + Xcc-8004.4263.1 0.87 -0.4 4,083,892 + Xcc-8004.4263.1 0.87 -0.0 4,083,892 + Xcc-8004.4263.1 0.87 +0.8 4,083,892 + Xcc-8004.4263.1 0.87 -1.9 4,083,893 - Xcc-8004.4263.1 0.87 +1.8 4,083,893 - Xcc-8004.4263.1 0.87 -0.4 4,083,893 - Xcc-8004.4263.1 0.87 -1.2 4,083,893 - Xcc-8004.4263.1 0.87 -0.2 4,083,995 + -1.0 4,083,995 + -0.3 4,083,995 + +0.7 4,083,995 + +0.8 4,083,995 + +0.2 4,083,995 + -1.0 4,083,995 + +0.3 4,083,995 + +1.0 4,083,995 + -1.7 4,083,995 + +0.4 4,083,995 + -1.3 4,083,995 + +3.6 4,083,996 - -0.6 4,083,996 - -2.0 4,083,996 - -1.1 4,083,996 - -0.2 4,083,996 - +0.3 4,083,996 - +0.5 4,083,996 - +0.5 4,083,996 - -1.9 4,083,996 - +1.4 4,083,996 - -0.8 4,083,996 - +1.3 4,083,997 + +2.1 4,083,997 + -1.2 4,083,997 + -1.1 4,083,997 + -0.3 4,083,998 - +0.5 4,083,998 - -0.8 4,083,998 - -1.3 4,083,998 - +0.3 4,084,021 + -0.3 4,084,039 + Xcc-8004.4264.1 0.12 +0.1 4,084,040 - Xcc-8004.4264.1 0.12 -2.1 4,084,040 - Xcc-8004.4264.1 0.12 +1.3 4,084,076 + Xcc-8004.4264.1 0.19 +1.5 4,084,555 + -0.7 4,084,555 + -0.1 4,084,555 + -1.9 4,084,555 + -0.5 4,084,555 + -0.5 4,084,555 + +1.6 4,084,555 + +1.3 4,084,555 + +0.9 4,084,555 + +1.3 4,084,556 - +0.1 4,084,556 - -0.3 4,084,556 - +3.2 4,084,556 - +0.8 4,084,556 - +0.2 4,084,556 - +0.6 4,084,781 - Xcc-8004.4265.1 0.23 -0.1 4,084,800 + Xcc-8004.4265.1 0.25 -0.1 4,084,800 + Xcc-8004.4265.1 0.25 +1.1 4,084,801 - Xcc-8004.4265.1 0.25 +0.1 4,084,801 - Xcc-8004.4265.1 0.25 -1.1
Or see this region's nucleotide sequence