Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3610.1 and Xcc-8004.3612.1 are separated by 97 nucleotides Xcc-8004.3612.1 and Xcc-8004.3613.1 are separated by 11 nucleotides Xcc-8004.3613.1 and Xcc-8004.3614.1 are separated by 48 nucleotides
Xcc-8004.3610.1: Xcc-8004.3610.1 - Cyclopropane-fatty-acyl-phospholipid synthase-like protein, clusters with FIG005069, at 3,498,053 to 3,499,123
Xcc-8004.3610.1
Xcc-8004.3612.1: Xcc-8004.3612.1 - Putative translation initiation inhibitor, yjgF family, at 3,499,221 to 3,499,568
Xcc-8004.3612.1
Xcc-8004.3613.1: Xcc-8004.3613.1 - FIG01211929: hypothetical protein, at 3,499,580 to 3,500,332
Xcc-8004.3613.1
Xcc-8004.3614.1: Xcc-8004.3614.1 - hypothetical protein, at 3,500,381 to 3,503,104
Xcc-8004.3614.1
Position (kb) 3499
3500 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3498.324 kb on + strand, within Xcc-8004.3610.1 at 3498.324 kb on + strand, within Xcc-8004.3610.1 at 3498.324 kb on + strand, within Xcc-8004.3610.1 at 3498.324 kb on + strand, within Xcc-8004.3610.1 at 3498.325 kb on - strand, within Xcc-8004.3610.1 at 3498.347 kb on + strand, within Xcc-8004.3610.1 at 3498.347 kb on + strand, within Xcc-8004.3610.1 at 3498.347 kb on + strand, within Xcc-8004.3610.1 at 3498.348 kb on - strand, within Xcc-8004.3610.1 at 3498.348 kb on - strand, within Xcc-8004.3610.1 at 3498.348 kb on - strand, within Xcc-8004.3610.1 at 3498.348 kb on - strand, within Xcc-8004.3610.1 at 3498.359 kb on + strand, within Xcc-8004.3610.1 at 3498.416 kb on + strand, within Xcc-8004.3610.1 at 3498.416 kb on + strand, within Xcc-8004.3610.1 at 3498.417 kb on - strand, within Xcc-8004.3610.1 at 3498.417 kb on - strand, within Xcc-8004.3610.1 at 3498.693 kb on - strand, within Xcc-8004.3610.1 at 3498.693 kb on - strand, within Xcc-8004.3610.1 at 3498.754 kb on + strand, within Xcc-8004.3610.1 at 3498.755 kb on - strand, within Xcc-8004.3610.1 at 3498.755 kb on - strand, within Xcc-8004.3610.1 at 3498.755 kb on - strand, within Xcc-8004.3610.1 at 3498.755 kb on - strand, within Xcc-8004.3610.1 at 3498.857 kb on - strand, within Xcc-8004.3610.1 at 3498.920 kb on + strand, within Xcc-8004.3610.1 at 3498.921 kb on - strand, within Xcc-8004.3610.1 at 3498.999 kb on - strand, within Xcc-8004.3610.1 at 3498.999 kb on - strand, within Xcc-8004.3610.1 at 3499.505 kb on - strand, within Xcc-8004.3612.1 at 3499.538 kb on + strand at 3499.538 kb on + strand at 3499.538 kb on + strand at 3499.538 kb on + strand at 3499.538 kb on + strand at 3499.538 kb on + strand at 3499.538 kb on + strand at 3499.539 kb on - strand at 3499.539 kb on - strand at 3499.539 kb on - strand at 3499.581 kb on + strand at 3499.582 kb on - strand at 3499.812 kb on + strand, within Xcc-8004.3613.1 at 3499.847 kb on + strand, within Xcc-8004.3613.1 at 3499.847 kb on + strand, within Xcc-8004.3613.1 at 3499.847 kb on + strand, within Xcc-8004.3613.1 at 3499.847 kb on + strand, within Xcc-8004.3613.1 at 3499.848 kb on - strand, within Xcc-8004.3613.1 at 3499.946 kb on + strand, within Xcc-8004.3613.1 at 3499.947 kb on - strand, within Xcc-8004.3613.1 at 3500.056 kb on - strand, within Xcc-8004.3613.1 at 3500.056 kb on - strand, within Xcc-8004.3613.1 at 3500.069 kb on + strand, within Xcc-8004.3613.1 at 3500.069 kb on + strand, within Xcc-8004.3613.1 at 3500.070 kb on - strand, within Xcc-8004.3613.1 at 3500.070 kb on - strand, within Xcc-8004.3613.1 at 3500.094 kb on + strand, within Xcc-8004.3613.1 at 3500.095 kb on - strand, within Xcc-8004.3613.1 at 3500.095 kb on - strand, within Xcc-8004.3613.1 at 3500.095 kb on - strand, within Xcc-8004.3613.1 at 3500.095 kb on - strand, within Xcc-8004.3613.1 at 3500.095 kb on - strand, within Xcc-8004.3613.1 at 3500.095 kb on - strand, within Xcc-8004.3613.1 at 3500.095 kb on - strand, within Xcc-8004.3613.1 at 3500.351 kb on + strand at 3500.351 kb on + strand at 3500.351 kb on + strand at 3500.351 kb on + strand at 3500.352 kb on - strand at 3500.352 kb on - strand at 3500.352 kb on - strand at 3500.352 kb on - strand at 3500.352 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 3,498,324 + Xcc-8004.3610.1 0.25 -1.9 3,498,324 + Xcc-8004.3610.1 0.25 +0.4 3,498,324 + Xcc-8004.3610.1 0.25 +1.3 3,498,324 + Xcc-8004.3610.1 0.25 -2.1 3,498,325 - Xcc-8004.3610.1 0.25 -2.8 3,498,347 + Xcc-8004.3610.1 0.27 -1.6 3,498,347 + Xcc-8004.3610.1 0.27 +1.4 3,498,347 + Xcc-8004.3610.1 0.27 +0.2 3,498,348 - Xcc-8004.3610.1 0.28 +0.9 3,498,348 - Xcc-8004.3610.1 0.28 -0.3 3,498,348 - Xcc-8004.3610.1 0.28 -0.6 3,498,348 - Xcc-8004.3610.1 0.28 -2.0 3,498,359 + Xcc-8004.3610.1 0.29 -0.3 3,498,416 + Xcc-8004.3610.1 0.34 +0.6 3,498,416 + Xcc-8004.3610.1 0.34 -0.1 3,498,417 - Xcc-8004.3610.1 0.34 -2.6 3,498,417 - Xcc-8004.3610.1 0.34 +0.3 3,498,693 - Xcc-8004.3610.1 0.60 +0.8 3,498,693 - Xcc-8004.3610.1 0.60 +0.3 3,498,754 + Xcc-8004.3610.1 0.65 +0.6 3,498,755 - Xcc-8004.3610.1 0.66 -0.5 3,498,755 - Xcc-8004.3610.1 0.66 -0.3 3,498,755 - Xcc-8004.3610.1 0.66 -1.2 3,498,755 - Xcc-8004.3610.1 0.66 +0.4 3,498,857 - Xcc-8004.3610.1 0.75 -1.4 3,498,920 + Xcc-8004.3610.1 0.81 -0.6 3,498,921 - Xcc-8004.3610.1 0.81 -0.8 3,498,999 - Xcc-8004.3610.1 0.88 -1.6 3,498,999 - Xcc-8004.3610.1 0.88 -0.1 3,499,505 - Xcc-8004.3612.1 0.82 -0.7 3,499,538 + +0.2 3,499,538 + +1.3 3,499,538 + -0.5 3,499,538 + +0.0 3,499,538 + -2.1 3,499,538 + +1.0 3,499,538 + -1.7 3,499,539 - -0.3 3,499,539 - -1.2 3,499,539 - +0.3 3,499,581 + +1.6 3,499,582 - +0.9 3,499,812 + Xcc-8004.3613.1 0.31 +0.2 3,499,847 + Xcc-8004.3613.1 0.35 +2.3 3,499,847 + Xcc-8004.3613.1 0.35 -0.7 3,499,847 + Xcc-8004.3613.1 0.35 +0.1 3,499,847 + Xcc-8004.3613.1 0.35 +0.3 3,499,848 - Xcc-8004.3613.1 0.36 +0.3 3,499,946 + Xcc-8004.3613.1 0.49 +3.3 3,499,947 - Xcc-8004.3613.1 0.49 -0.9 3,500,056 - Xcc-8004.3613.1 0.63 -1.5 3,500,056 - Xcc-8004.3613.1 0.63 -1.5 3,500,069 + Xcc-8004.3613.1 0.65 -2.6 3,500,069 + Xcc-8004.3613.1 0.65 +0.2 3,500,070 - Xcc-8004.3613.1 0.65 +2.2 3,500,070 - Xcc-8004.3613.1 0.65 +2.1 3,500,094 + Xcc-8004.3613.1 0.68 +0.6 3,500,095 - Xcc-8004.3613.1 0.68 -0.2 3,500,095 - Xcc-8004.3613.1 0.68 +0.1 3,500,095 - Xcc-8004.3613.1 0.68 -0.5 3,500,095 - Xcc-8004.3613.1 0.68 +1.2 3,500,095 - Xcc-8004.3613.1 0.68 -1.0 3,500,095 - Xcc-8004.3613.1 0.68 +0.5 3,500,095 - Xcc-8004.3613.1 0.68 -1.3 3,500,351 + -1.2 3,500,351 + -2.8 3,500,351 + +0.1 3,500,351 + -0.5 3,500,352 - -1.0 3,500,352 - -0.9 3,500,352 - +0.6 3,500,352 - +0.2 3,500,352 - -1.6
Or see this region's nucleotide sequence