Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3485.1 and Xcc-8004.3486.1 are separated by 188 nucleotides Xcc-8004.3486.1 and Xcc-8004.3487.1 are separated by 74 nucleotides
Xcc-8004.3485.1: Xcc-8004.3485.1 - Replicative DNA helicase (EC 3.6.1.-), at 3,374,150 to 3,375,580
Xcc-8004.3485.1
Xcc-8004.3486.1: Xcc-8004.3486.1 - FIG00553873: hypothetical protein, at 3,375,769 to 3,376,323
Xcc-8004.3486.1
Xcc-8004.3487.1: Xcc-8004.3487.1 - Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4), at 3,376,398 to 3,378,341
Xcc-8004.3487.1
Position (kb) 3375
3376
3377 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3375.622 kb on + strand at 3375.622 kb on + strand at 3375.622 kb on + strand at 3375.622 kb on + strand at 3375.622 kb on + strand at 3375.622 kb on + strand at 3375.622 kb on + strand at 3375.622 kb on + strand at 3375.622 kb on + strand at 3375.622 kb on + strand at 3375.622 kb on + strand at 3375.622 kb on + strand at 3375.623 kb on - strand at 3375.623 kb on - strand at 3375.623 kb on - strand at 3375.623 kb on - strand at 3375.623 kb on - strand at 3375.623 kb on - strand at 3375.623 kb on - strand at 3375.623 kb on - strand at 3375.623 kb on - strand at 3375.623 kb on - strand at 3375.623 kb on - strand at 3375.664 kb on - strand at 3375.674 kb on + strand at 3375.674 kb on + strand at 3375.674 kb on + strand at 3375.674 kb on + strand at 3375.674 kb on + strand at 3375.675 kb on - strand at 3375.693 kb on + strand at 3375.694 kb on - strand at 3375.694 kb on - strand at 3375.737 kb on - strand at 3375.881 kb on + strand, within Xcc-8004.3486.1 at 3375.881 kb on + strand, within Xcc-8004.3486.1 at 3375.881 kb on + strand, within Xcc-8004.3486.1 at 3375.881 kb on + strand, within Xcc-8004.3486.1 at 3375.881 kb on + strand, within Xcc-8004.3486.1 at 3375.882 kb on - strand, within Xcc-8004.3486.1 at 3375.882 kb on - strand, within Xcc-8004.3486.1 at 3375.882 kb on - strand, within Xcc-8004.3486.1 at 3375.882 kb on - strand, within Xcc-8004.3486.1 at 3375.882 kb on - strand, within Xcc-8004.3486.1 at 3375.890 kb on + strand, within Xcc-8004.3486.1 at 3375.890 kb on + strand, within Xcc-8004.3486.1 at 3375.890 kb on + strand, within Xcc-8004.3486.1 at 3375.890 kb on + strand, within Xcc-8004.3486.1 at 3375.890 kb on + strand, within Xcc-8004.3486.1 at 3375.891 kb on - strand, within Xcc-8004.3486.1 at 3375.891 kb on - strand, within Xcc-8004.3486.1 at 3375.891 kb on - strand, within Xcc-8004.3486.1 at 3375.891 kb on - strand, within Xcc-8004.3486.1 at 3375.891 kb on - strand, within Xcc-8004.3486.1 at 3375.891 kb on - strand, within Xcc-8004.3486.1 at 3375.891 kb on - strand, within Xcc-8004.3486.1 at 3375.926 kb on + strand, within Xcc-8004.3486.1 at 3375.927 kb on - strand, within Xcc-8004.3486.1 at 3375.927 kb on - strand, within Xcc-8004.3486.1 at 3375.927 kb on - strand, within Xcc-8004.3486.1 at 3375.943 kb on + strand, within Xcc-8004.3486.1 at 3375.943 kb on + strand, within Xcc-8004.3486.1 at 3375.943 kb on + strand, within Xcc-8004.3486.1 at 3375.943 kb on + strand, within Xcc-8004.3486.1 at 3375.943 kb on + strand, within Xcc-8004.3486.1 at 3375.943 kb on + strand, within Xcc-8004.3486.1 at 3375.943 kb on + strand, within Xcc-8004.3486.1 at 3375.943 kb on + strand, within Xcc-8004.3486.1 at 3375.943 kb on + strand, within Xcc-8004.3486.1 at 3375.944 kb on - strand, within Xcc-8004.3486.1 at 3375.944 kb on - strand, within Xcc-8004.3486.1 at 3375.944 kb on - strand, within Xcc-8004.3486.1 at 3375.944 kb on - strand, within Xcc-8004.3486.1 at 3375.944 kb on - strand, within Xcc-8004.3486.1 at 3375.944 kb on - strand, within Xcc-8004.3486.1 at 3375.944 kb on - strand, within Xcc-8004.3486.1 at 3375.944 kb on - strand, within Xcc-8004.3486.1 at 3376.031 kb on + strand, within Xcc-8004.3486.1 at 3376.031 kb on + strand, within Xcc-8004.3486.1 at 3376.031 kb on + strand, within Xcc-8004.3486.1 at 3376.088 kb on + strand, within Xcc-8004.3486.1 at 3376.089 kb on - strand, within Xcc-8004.3486.1 at 3376.126 kb on + strand, within Xcc-8004.3486.1 at 3376.126 kb on + strand, within Xcc-8004.3486.1 at 3376.127 kb on - strand, within Xcc-8004.3486.1 at 3376.127 kb on - strand, within Xcc-8004.3486.1 at 3376.161 kb on - strand, within Xcc-8004.3486.1 at 3376.184 kb on + strand, within Xcc-8004.3486.1 at 3376.184 kb on + strand, within Xcc-8004.3486.1 at 3376.184 kb on + strand, within Xcc-8004.3486.1 at 3376.184 kb on + strand, within Xcc-8004.3486.1 at 3376.185 kb on - strand, within Xcc-8004.3486.1 at 3376.271 kb on + strand at 3376.271 kb on + strand at 3376.271 kb on + strand at 3376.271 kb on + strand at 3376.271 kb on + strand at 3376.272 kb on - strand at 3376.272 kb on - strand at 3376.272 kb on - strand at 3376.272 kb on - strand at 3376.272 kb on - strand at 3376.313 kb on + strand at 3376.313 kb on + strand at 3376.313 kb on + strand at 3376.313 kb on + strand at 3376.313 kb on + strand at 3376.314 kb on - strand at 3376.314 kb on - strand at 3376.314 kb on - strand at 3376.314 kb on - strand at 3376.314 kb on - strand at 3376.314 kb on - strand at 3376.357 kb on + strand at 3376.357 kb on + strand at 3376.357 kb on + strand at 3376.357 kb on + strand at 3376.357 kb on + strand at 3376.357 kb on + strand at 3376.358 kb on - strand at 3376.358 kb on - strand at 3376.651 kb on + strand, within Xcc-8004.3487.1 at 3376.651 kb on + strand, within Xcc-8004.3487.1 at 3376.652 kb on - strand, within Xcc-8004.3487.1 at 3376.699 kb on + strand, within Xcc-8004.3487.1 at 3376.699 kb on + strand, within Xcc-8004.3487.1 at 3376.700 kb on - strand, within Xcc-8004.3487.1 at 3376.700 kb on - strand, within Xcc-8004.3487.1 at 3376.700 kb on - strand, within Xcc-8004.3487.1 at 3376.700 kb on - strand, within Xcc-8004.3487.1 at 3376.700 kb on - strand, within Xcc-8004.3487.1 at 3376.700 kb on - strand, within Xcc-8004.3487.1 at 3376.700 kb on - strand, within Xcc-8004.3487.1 at 3376.700 kb on - strand, within Xcc-8004.3487.1 at 3376.700 kb on - strand, within Xcc-8004.3487.1 at 3376.700 kb on - strand, within Xcc-8004.3487.1 at 3376.700 kb on - strand, within Xcc-8004.3487.1 at 3376.720 kb on + strand, within Xcc-8004.3487.1 at 3376.846 kb on + strand, within Xcc-8004.3487.1 at 3376.846 kb on + strand, within Xcc-8004.3487.1 at 3376.847 kb on - strand, within Xcc-8004.3487.1 at 3376.847 kb on - strand, within Xcc-8004.3487.1 at 3376.990 kb on + strand, within Xcc-8004.3487.1 at 3376.990 kb on + strand, within Xcc-8004.3487.1 at 3376.990 kb on + strand, within Xcc-8004.3487.1 at 3376.990 kb on + strand, within Xcc-8004.3487.1 at 3376.991 kb on - strand, within Xcc-8004.3487.1 at 3376.991 kb on - strand, within Xcc-8004.3487.1 at 3376.991 kb on - strand, within Xcc-8004.3487.1 at 3377.132 kb on + strand, within Xcc-8004.3487.1 at 3377.132 kb on + strand, within Xcc-8004.3487.1 at 3377.133 kb on - strand, within Xcc-8004.3487.1 at 3377.133 kb on - strand, within Xcc-8004.3487.1 at 3377.149 kb on + strand, within Xcc-8004.3487.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 3,375,622 + +0.2 3,375,622 + +1.7 3,375,622 + -2.1 3,375,622 + +0.3 3,375,622 + +0.0 3,375,622 + -1.5 3,375,622 + +0.2 3,375,622 + +0.3 3,375,622 + -0.3 3,375,622 + +0.6 3,375,622 + +1.8 3,375,622 + -0.7 3,375,623 - -1.7 3,375,623 - -1.0 3,375,623 - +0.1 3,375,623 - -1.6 3,375,623 - +0.9 3,375,623 - -0.1 3,375,623 - +1.9 3,375,623 - +0.4 3,375,623 - -1.0 3,375,623 - -0.6 3,375,623 - -1.6 3,375,664 - -0.3 3,375,674 + +0.9 3,375,674 + -1.1 3,375,674 + -1.7 3,375,674 + -0.5 3,375,674 + -0.9 3,375,675 - -0.8 3,375,693 + -2.8 3,375,694 - +0.3 3,375,694 - -0.0 3,375,737 - +1.8 3,375,881 + Xcc-8004.3486.1 0.20 -1.4 3,375,881 + Xcc-8004.3486.1 0.20 -0.3 3,375,881 + Xcc-8004.3486.1 0.20 +0.1 3,375,881 + Xcc-8004.3486.1 0.20 -0.1 3,375,881 + Xcc-8004.3486.1 0.20 -0.4 3,375,882 - Xcc-8004.3486.1 0.20 -1.6 3,375,882 - Xcc-8004.3486.1 0.20 +0.6 3,375,882 - Xcc-8004.3486.1 0.20 -0.0 3,375,882 - Xcc-8004.3486.1 0.20 -0.1 3,375,882 - Xcc-8004.3486.1 0.20 +1.5 3,375,890 + Xcc-8004.3486.1 0.22 +1.0 3,375,890 + Xcc-8004.3486.1 0.22 -0.7 3,375,890 + Xcc-8004.3486.1 0.22 +0.8 3,375,890 + Xcc-8004.3486.1 0.22 -0.4 3,375,890 + Xcc-8004.3486.1 0.22 -0.4 3,375,891 - Xcc-8004.3486.1 0.22 -1.5 3,375,891 - Xcc-8004.3486.1 0.22 +0.6 3,375,891 - Xcc-8004.3486.1 0.22 +0.7 3,375,891 - Xcc-8004.3486.1 0.22 -0.9 3,375,891 - Xcc-8004.3486.1 0.22 +0.1 3,375,891 - Xcc-8004.3486.1 0.22 +0.6 3,375,891 - Xcc-8004.3486.1 0.22 -0.3 3,375,926 + Xcc-8004.3486.1 0.28 +0.3 3,375,927 - Xcc-8004.3486.1 0.28 -2.3 3,375,927 - Xcc-8004.3486.1 0.28 -0.3 3,375,927 - Xcc-8004.3486.1 0.28 +0.2 3,375,943 + Xcc-8004.3486.1 0.31 +1.2 3,375,943 + Xcc-8004.3486.1 0.31 +1.7 3,375,943 + Xcc-8004.3486.1 0.31 +1.6 3,375,943 + Xcc-8004.3486.1 0.31 +1.2 3,375,943 + Xcc-8004.3486.1 0.31 -0.2 3,375,943 + Xcc-8004.3486.1 0.31 -0.8 3,375,943 + Xcc-8004.3486.1 0.31 -0.6 3,375,943 + Xcc-8004.3486.1 0.31 -1.9 3,375,943 + Xcc-8004.3486.1 0.31 -0.8 3,375,944 - Xcc-8004.3486.1 0.32 -1.7 3,375,944 - Xcc-8004.3486.1 0.32 +0.7 3,375,944 - Xcc-8004.3486.1 0.32 +1.7 3,375,944 - Xcc-8004.3486.1 0.32 +1.4 3,375,944 - Xcc-8004.3486.1 0.32 -0.6 3,375,944 - Xcc-8004.3486.1 0.32 -0.1 3,375,944 - Xcc-8004.3486.1 0.32 -1.1 3,375,944 - Xcc-8004.3486.1 0.32 -1.9 3,376,031 + Xcc-8004.3486.1 0.47 -0.5 3,376,031 + Xcc-8004.3486.1 0.47 -2.2 3,376,031 + Xcc-8004.3486.1 0.47 +0.1 3,376,088 + Xcc-8004.3486.1 0.57 +0.1 3,376,089 - Xcc-8004.3486.1 0.58 -0.6 3,376,126 + Xcc-8004.3486.1 0.64 +1.1 3,376,126 + Xcc-8004.3486.1 0.64 +0.6 3,376,127 - Xcc-8004.3486.1 0.65 -0.4 3,376,127 - Xcc-8004.3486.1 0.65 -2.6 3,376,161 - Xcc-8004.3486.1 0.71 +0.3 3,376,184 + Xcc-8004.3486.1 0.75 -0.4 3,376,184 + Xcc-8004.3486.1 0.75 +0.4 3,376,184 + Xcc-8004.3486.1 0.75 -2.4 3,376,184 + Xcc-8004.3486.1 0.75 +2.2 3,376,185 - Xcc-8004.3486.1 0.75 +0.6 3,376,271 + -2.3 3,376,271 + -0.1 3,376,271 + +0.4 3,376,271 + -1.0 3,376,271 + -0.3 3,376,272 - +0.4 3,376,272 - +0.3 3,376,272 - -0.8 3,376,272 - -0.9 3,376,272 - -0.9 3,376,313 + -1.2 3,376,313 + +0.4 3,376,313 + +0.2 3,376,313 + -0.3 3,376,313 + +1.2 3,376,314 - -1.3 3,376,314 - +0.3 3,376,314 - -0.2 3,376,314 - -2.0 3,376,314 - -0.6 3,376,314 - +0.9 3,376,357 + +2.2 3,376,357 + -2.1 3,376,357 + +1.7 3,376,357 + +0.7 3,376,357 + +0.8 3,376,357 + -1.6 3,376,358 - -1.0 3,376,358 - +1.7 3,376,651 + Xcc-8004.3487.1 0.13 +0.1 3,376,651 + Xcc-8004.3487.1 0.13 -0.8 3,376,652 - Xcc-8004.3487.1 0.13 -0.9 3,376,699 + Xcc-8004.3487.1 0.15 -0.9 3,376,699 + Xcc-8004.3487.1 0.15 -0.4 3,376,700 - Xcc-8004.3487.1 0.16 +2.0 3,376,700 - Xcc-8004.3487.1 0.16 -1.2 3,376,700 - Xcc-8004.3487.1 0.16 -1.0 3,376,700 - Xcc-8004.3487.1 0.16 -2.2 3,376,700 - Xcc-8004.3487.1 0.16 -0.0 3,376,700 - Xcc-8004.3487.1 0.16 +1.4 3,376,700 - Xcc-8004.3487.1 0.16 +0.1 3,376,700 - Xcc-8004.3487.1 0.16 +0.3 3,376,700 - Xcc-8004.3487.1 0.16 -2.8 3,376,700 - Xcc-8004.3487.1 0.16 +0.7 3,376,700 - Xcc-8004.3487.1 0.16 +0.0 3,376,720 + Xcc-8004.3487.1 0.17 +1.0 3,376,846 + Xcc-8004.3487.1 0.23 -0.1 3,376,846 + Xcc-8004.3487.1 0.23 +0.7 3,376,847 - Xcc-8004.3487.1 0.23 -0.3 3,376,847 - Xcc-8004.3487.1 0.23 +0.3 3,376,990 + Xcc-8004.3487.1 0.30 +1.0 3,376,990 + Xcc-8004.3487.1 0.30 +0.9 3,376,990 + Xcc-8004.3487.1 0.30 +2.6 3,376,990 + Xcc-8004.3487.1 0.30 -0.4 3,376,991 - Xcc-8004.3487.1 0.31 -1.3 3,376,991 - Xcc-8004.3487.1 0.31 -0.6 3,376,991 - Xcc-8004.3487.1 0.31 -1.2 3,377,132 + Xcc-8004.3487.1 0.38 +0.9 3,377,132 + Xcc-8004.3487.1 0.38 +0.1 3,377,133 - Xcc-8004.3487.1 0.38 +1.7 3,377,133 - Xcc-8004.3487.1 0.38 +1.0 3,377,149 + Xcc-8004.3487.1 0.39 +0.6
Or see this region's nucleotide sequence