Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2125.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2124.1 and Xcc-8004.2125.1 are separated by 161 nucleotidesXcc-8004.2125.1 and Xcc-8004.2126.1 overlap by 1 nucleotides Xcc-8004.2124.1: Xcc-8004.2124.1 - hypothetical protein, at 2,036,415 to 2,037,131 Xcc-8004.2124.1 Xcc-8004.2125.1: Xcc-8004.2125.1 - 4-hydroxyproline epimerase (EC 5.1.1.8), at 2,037,293 to 2,038,231 Xcc-8004.2125.1 Xcc-8004.2126.1: Xcc-8004.2126.1 - D-amino-acid oxidase (EC 1.4.3.3), at 2,038,231 to 2,039,460 Xcc-8004.2126.1 Position (kb) 2037 2038 2039Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2036.387 kb on + strandat 2036.416 kb on + strandat 2036.416 kb on + strandat 2036.416 kb on + strandat 2036.417 kb on - strandat 2036.417 kb on - strandat 2036.417 kb on - strandat 2036.417 kb on - strandat 2036.417 kb on - strandat 2036.417 kb on - strandat 2036.545 kb on + strand, within Xcc-8004.2124.1at 2036.545 kb on + strand, within Xcc-8004.2124.1at 2036.545 kb on + strand, within Xcc-8004.2124.1at 2036.546 kb on - strand, within Xcc-8004.2124.1at 2036.546 kb on - strand, within Xcc-8004.2124.1at 2036.546 kb on - strand, within Xcc-8004.2124.1at 2036.546 kb on - strand, within Xcc-8004.2124.1at 2036.574 kb on + strand, within Xcc-8004.2124.1at 2036.574 kb on + strand, within Xcc-8004.2124.1at 2036.574 kb on + strand, within Xcc-8004.2124.1at 2036.575 kb on - strand, within Xcc-8004.2124.1at 2036.575 kb on - strand, within Xcc-8004.2124.1at 2036.575 kb on - strand, within Xcc-8004.2124.1at 2036.575 kb on - strand, within Xcc-8004.2124.1at 2036.575 kb on - strand, within Xcc-8004.2124.1at 2036.734 kb on + strand, within Xcc-8004.2124.1at 2036.734 kb on + strand, within Xcc-8004.2124.1at 2036.734 kb on + strand, within Xcc-8004.2124.1at 2036.734 kb on + strand, within Xcc-8004.2124.1at 2036.857 kb on + strand, within Xcc-8004.2124.1at 2036.858 kb on - strand, within Xcc-8004.2124.1at 2036.923 kb on + strand, within Xcc-8004.2124.1at 2036.923 kb on + strand, within Xcc-8004.2124.1at 2036.923 kb on + strand, within Xcc-8004.2124.1at 2036.923 kb on + strand, within Xcc-8004.2124.1at 2036.923 kb on + strand, within Xcc-8004.2124.1at 2036.923 kb on + strand, within Xcc-8004.2124.1at 2036.923 kb on + strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.924 kb on - strand, within Xcc-8004.2124.1at 2036.949 kb on + strand, within Xcc-8004.2124.1at 2036.949 kb on + strand, within Xcc-8004.2124.1at 2036.949 kb on + strand, within Xcc-8004.2124.1at 2036.950 kb on - strand, within Xcc-8004.2124.1at 2037.031 kb on + strand, within Xcc-8004.2124.1at 2037.184 kb on + strandat 2037.185 kb on - strandat 2037.543 kb on - strand, within Xcc-8004.2125.1at 2037.648 kb on + strand, within Xcc-8004.2125.1at 2037.648 kb on + strand, within Xcc-8004.2125.1at 2037.649 kb on - strand, within Xcc-8004.2125.1at 2037.732 kb on + strand, within Xcc-8004.2125.1at 2037.732 kb on + strand, within Xcc-8004.2125.1at 2037.732 kb on + strand, within Xcc-8004.2125.1at 2037.732 kb on + strand, within Xcc-8004.2125.1at 2037.733 kb on - strand, within Xcc-8004.2125.1at 2037.733 kb on - strand, within Xcc-8004.2125.1at 2037.845 kb on + strand, within Xcc-8004.2125.1at 2037.845 kb on + strand, within Xcc-8004.2125.1at 2037.845 kb on + strand, within Xcc-8004.2125.1at 2037.846 kb on - strand, within Xcc-8004.2125.1at 2037.846 kb on - strand, within Xcc-8004.2125.1at 2037.916 kb on + strand, within Xcc-8004.2125.1at 2037.917 kb on - strand, within Xcc-8004.2125.1at 2037.989 kb on + strand, within Xcc-8004.2125.1at 2038.116 kb on - strand, within Xcc-8004.2125.1at 2038.317 kb on + strandat 2038.317 kb on + strandat 2038.317 kb on + strandat 2038.317 kb on + strandat 2038.317 kb on + strandat 2038.317 kb on + strandat 2038.357 kb on + strand, within Xcc-8004.2126.1at 2038.357 kb on + strand, within Xcc-8004.2126.1at 2038.358 kb on - strand, within Xcc-8004.2126.1at 2038.358 kb on - strand, within Xcc-8004.2126.1at 2038.529 kb on + strand, within Xcc-8004.2126.1at 2038.529 kb on + strand, within Xcc-8004.2126.1at 2038.537 kb on + strand, within Xcc-8004.2126.1at 2038.708 kb on + strand, within Xcc-8004.2126.1at 2038.709 kb on - strand, within Xcc-8004.2126.1at 2038.777 kb on + strand, within Xcc-8004.2126.1at 2038.778 kb on - strand, within Xcc-8004.2126.1at 2039.041 kb on + strand, within Xcc-8004.2126.1at 2039.042 kb on - strand, within Xcc-8004.2126.1at 2039.042 kb on - strand, within Xcc-8004.2126.1at 2039.042 kb on - strand, within Xcc-8004.2126.1at 2039.137 kb on + strand, within Xcc-8004.2126.1at 2039.203 kb on + strand, within Xcc-8004.2126.1at 2039.203 kb on + strand, within Xcc-8004.2126.1at 2039.203 kb on + strand, within Xcc-8004.2126.1at 2039.203 kb on + strand, within Xcc-8004.2126.1at 2039.204 kb on - strand, within Xcc-8004.2126.1at 2039.204 kb on - strand, within Xcc-8004.2126.1at 2039.204 kb on - strand, within Xcc-8004.2126.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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2,036,387 + +0.2
2,036,416 + -1.1
2,036,416 + -0.6
2,036,416 + -1.2
2,036,417 - +0.4
2,036,417 - -0.3
2,036,417 - -3.1
2,036,417 - -0.0
2,036,417 - -1.5
2,036,417 - +1.2
2,036,545 + Xcc-8004.2124.1 0.18 +1.5
2,036,545 + Xcc-8004.2124.1 0.18 -0.2
2,036,545 + Xcc-8004.2124.1 0.18 +1.7
2,036,546 - Xcc-8004.2124.1 0.18 -1.0
2,036,546 - Xcc-8004.2124.1 0.18 +0.6
2,036,546 - Xcc-8004.2124.1 0.18 +1.3
2,036,546 - Xcc-8004.2124.1 0.18 +0.7
2,036,574 + Xcc-8004.2124.1 0.22 +0.1
2,036,574 + Xcc-8004.2124.1 0.22 +0.6
2,036,574 + Xcc-8004.2124.1 0.22 -1.4
2,036,575 - Xcc-8004.2124.1 0.22 -0.5
2,036,575 - Xcc-8004.2124.1 0.22 +0.1
2,036,575 - Xcc-8004.2124.1 0.22 +0.4
2,036,575 - Xcc-8004.2124.1 0.22 +0.5
2,036,575 - Xcc-8004.2124.1 0.22 -0.3
2,036,734 + Xcc-8004.2124.1 0.44 +1.3
2,036,734 + Xcc-8004.2124.1 0.44 -2.9
2,036,734 + Xcc-8004.2124.1 0.44 +0.5
2,036,734 + Xcc-8004.2124.1 0.44 +0.0
2,036,857 + Xcc-8004.2124.1 0.62 +0.4
2,036,858 - Xcc-8004.2124.1 0.62 +0.3
2,036,923 + Xcc-8004.2124.1 0.71 +1.3
2,036,923 + Xcc-8004.2124.1 0.71 +1.9
2,036,923 + Xcc-8004.2124.1 0.71 +0.3
2,036,923 + Xcc-8004.2124.1 0.71 -0.6
2,036,923 + Xcc-8004.2124.1 0.71 +1.2
2,036,923 + Xcc-8004.2124.1 0.71 +1.1
2,036,923 + Xcc-8004.2124.1 0.71 -0.0
2,036,924 - Xcc-8004.2124.1 0.71 -0.7
2,036,924 - Xcc-8004.2124.1 0.71 -0.7
2,036,924 - Xcc-8004.2124.1 0.71 -1.0
2,036,924 - Xcc-8004.2124.1 0.71 -2.4
2,036,924 - Xcc-8004.2124.1 0.71 +0.7
2,036,924 - Xcc-8004.2124.1 0.71 +0.1
2,036,924 - Xcc-8004.2124.1 0.71 -0.8
2,036,924 - Xcc-8004.2124.1 0.71 -0.2
2,036,924 - Xcc-8004.2124.1 0.71 +1.0
2,036,924 - Xcc-8004.2124.1 0.71 +3.1
2,036,924 - Xcc-8004.2124.1 0.71 -2.1
2,036,924 - Xcc-8004.2124.1 0.71 -1.0
2,036,924 - Xcc-8004.2124.1 0.71 +1.1
2,036,924 - Xcc-8004.2124.1 0.71 -1.0
2,036,924 - Xcc-8004.2124.1 0.71 -0.3
2,036,924 - Xcc-8004.2124.1 0.71 -2.4
2,036,924 - Xcc-8004.2124.1 0.71 -2.1
2,036,949 + Xcc-8004.2124.1 0.74 +1.0
2,036,949 + Xcc-8004.2124.1 0.74 +0.4
2,036,949 + Xcc-8004.2124.1 0.74 -0.3
2,036,950 - Xcc-8004.2124.1 0.75 +0.6
2,037,031 + Xcc-8004.2124.1 0.86 +1.5
2,037,184 + -0.1
2,037,185 - +1.0
2,037,543 - Xcc-8004.2125.1 0.27 +0.4
2,037,648 + Xcc-8004.2125.1 0.38 +0.2
2,037,648 + Xcc-8004.2125.1 0.38 +1.1
2,037,649 - Xcc-8004.2125.1 0.38 -1.4
2,037,732 + Xcc-8004.2125.1 0.47 +0.9
2,037,732 + Xcc-8004.2125.1 0.47 -0.9
2,037,732 + Xcc-8004.2125.1 0.47 -0.5
2,037,732 + Xcc-8004.2125.1 0.47 +0.0
2,037,733 - Xcc-8004.2125.1 0.47 -2.3
2,037,733 - Xcc-8004.2125.1 0.47 -0.6
2,037,845 + Xcc-8004.2125.1 0.59 -2.4
2,037,845 + Xcc-8004.2125.1 0.59 +1.3
2,037,845 + Xcc-8004.2125.1 0.59 +0.1
2,037,846 - Xcc-8004.2125.1 0.59 -0.4
2,037,846 - Xcc-8004.2125.1 0.59 -0.9
2,037,916 + Xcc-8004.2125.1 0.66 -0.7
2,037,917 - Xcc-8004.2125.1 0.66 +2.0
2,037,989 + Xcc-8004.2125.1 0.74 +0.5
2,038,116 - Xcc-8004.2125.1 0.88 +0.4
2,038,317 + -1.9
2,038,317 + -0.3
2,038,317 + -0.2
2,038,317 + +0.2
2,038,317 + +0.8
2,038,317 + -1.0
2,038,357 + Xcc-8004.2126.1 0.10 -2.2
2,038,357 + Xcc-8004.2126.1 0.10 +2.5
2,038,358 - Xcc-8004.2126.1 0.10 -0.1
2,038,358 - Xcc-8004.2126.1 0.10 -2.5
2,038,529 + Xcc-8004.2126.1 0.24 -0.7
2,038,529 + Xcc-8004.2126.1 0.24 -2.2
2,038,537 + Xcc-8004.2126.1 0.25 -0.5
2,038,708 + Xcc-8004.2126.1 0.39 -1.6
2,038,709 - Xcc-8004.2126.1 0.39 -0.0
2,038,777 + Xcc-8004.2126.1 0.44 -1.4
2,038,778 - Xcc-8004.2126.1 0.44 -0.1
2,039,041 + Xcc-8004.2126.1 0.66 -3.1
2,039,042 - Xcc-8004.2126.1 0.66 -1.5
2,039,042 - Xcc-8004.2126.1 0.66 -0.2
2,039,042 - Xcc-8004.2126.1 0.66 -1.7
2,039,137 + Xcc-8004.2126.1 0.74 -1.5
2,039,203 + Xcc-8004.2126.1 0.79 -2.5
2,039,203 + Xcc-8004.2126.1 0.79 +1.0
2,039,203 + Xcc-8004.2126.1 0.79 -0.8
2,039,203 + Xcc-8004.2126.1 0.79 +0.7
2,039,204 - Xcc-8004.2126.1 0.79 +2.3
2,039,204 - Xcc-8004.2126.1 0.79 -0.1
2,039,204 - Xcc-8004.2126.1 0.79 -0.1

Or see this region's nucleotide sequence