Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.131.1 and Xcc-8004.133.1 are separated by 167 nucleotides Xcc-8004.133.1 and Xcc-8004.134.1 are separated by 367 nucleotides
Xcc-8004.131.1: Xcc-8004.131.1 - iron transporter, at 119,195 to 121,321
Xcc-8004.131.1
Xcc-8004.133.1: Xcc-8004.133.1 - FIG01209858: hypothetical protein, at 121,489 to 121,884
Xcc-8004.133.1
Xcc-8004.134.1: Xcc-8004.134.1 - putative; ORF located using Glimmer/Genemark, at 122,252 to 122,725
Xcc-8004.134.1
Position (kb) 121
122 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 120.581 kb on + strand, within Xcc-8004.131.1 at 120.581 kb on + strand, within Xcc-8004.131.1 at 120.581 kb on + strand, within Xcc-8004.131.1 at 120.581 kb on + strand, within Xcc-8004.131.1 at 120.581 kb on + strand, within Xcc-8004.131.1 at 120.581 kb on + strand, within Xcc-8004.131.1 at 120.581 kb on + strand, within Xcc-8004.131.1 at 120.581 kb on + strand, within Xcc-8004.131.1 at 120.581 kb on + strand, within Xcc-8004.131.1 at 120.582 kb on - strand, within Xcc-8004.131.1 at 120.582 kb on - strand, within Xcc-8004.131.1 at 120.582 kb on - strand, within Xcc-8004.131.1 at 120.582 kb on - strand, within Xcc-8004.131.1 at 120.582 kb on - strand, within Xcc-8004.131.1 at 120.582 kb on - strand, within Xcc-8004.131.1 at 120.582 kb on - strand, within Xcc-8004.131.1 at 120.582 kb on - strand, within Xcc-8004.131.1 at 120.582 kb on - strand, within Xcc-8004.131.1 at 120.582 kb on - strand, within Xcc-8004.131.1 at 120.582 kb on - strand, within Xcc-8004.131.1 at 120.582 kb on - strand, within Xcc-8004.131.1 at 120.897 kb on - strand, within Xcc-8004.131.1 at 120.897 kb on - strand, within Xcc-8004.131.1 at 120.897 kb on - strand, within Xcc-8004.131.1 at 121.101 kb on + strand, within Xcc-8004.131.1 at 121.102 kb on - strand, within Xcc-8004.131.1 at 121.102 kb on - strand, within Xcc-8004.131.1 at 121.124 kb on + strand at 121.124 kb on + strand at 121.183 kb on + strand at 121.183 kb on + strand at 121.220 kb on + strand at 121.220 kb on + strand at 121.220 kb on + strand at 121.220 kb on + strand at 121.220 kb on + strand at 121.220 kb on + strand at 121.220 kb on + strand at 121.220 kb on + strand at 121.220 kb on + strand at 121.221 kb on - strand at 121.221 kb on - strand at 121.221 kb on - strand at 121.221 kb on - strand at 121.221 kb on - strand at 121.221 kb on - strand at 121.221 kb on - strand at 121.224 kb on + strand at 121.224 kb on + strand at 121.224 kb on + strand at 121.224 kb on + strand at 121.224 kb on + strand at 121.225 kb on - strand at 121.225 kb on - strand at 121.225 kb on - strand at 121.260 kb on - strand at 121.262 kb on + strand at 121.263 kb on - strand at 121.286 kb on + strand at 121.287 kb on - strand at 121.287 kb on - strand at 121.287 kb on - strand at 121.287 kb on - strand at 121.293 kb on + strand at 121.293 kb on + strand at 121.294 kb on - strand at 121.294 kb on - strand at 121.366 kb on + strand at 121.366 kb on + strand at 121.437 kb on + strand at 121.437 kb on + strand at 121.437 kb on + strand at 121.437 kb on + strand at 121.437 kb on + strand at 121.437 kb on + strand at 121.437 kb on + strand at 121.438 kb on - strand at 121.438 kb on - strand at 121.438 kb on - strand at 121.438 kb on - strand at 121.438 kb on - strand at 121.454 kb on + strand at 121.454 kb on + strand at 121.454 kb on + strand at 121.455 kb on - strand at 121.455 kb on - strand at 121.467 kb on + strand at 121.467 kb on + strand at 121.468 kb on - strand at 121.468 kb on - strand at 121.578 kb on + strand, within Xcc-8004.133.1 at 121.578 kb on + strand, within Xcc-8004.133.1 at 121.578 kb on + strand, within Xcc-8004.133.1 at 121.579 kb on - strand, within Xcc-8004.133.1 at 121.579 kb on - strand, within Xcc-8004.133.1 at 121.579 kb on - strand, within Xcc-8004.133.1 at 121.579 kb on - strand, within Xcc-8004.133.1 at 121.604 kb on + strand, within Xcc-8004.133.1 at 121.736 kb on + strand, within Xcc-8004.133.1 at 121.736 kb on + strand, within Xcc-8004.133.1 at 121.737 kb on - strand, within Xcc-8004.133.1 at 121.737 kb on - strand, within Xcc-8004.133.1 at 121.737 kb on - strand, within Xcc-8004.133.1 at 121.781 kb on + strand, within Xcc-8004.133.1 at 121.782 kb on - strand, within Xcc-8004.133.1 at 121.882 kb on + strand at 121.882 kb on + strand at 121.883 kb on - strand at 121.883 kb on - strand at 121.883 kb on - strand at 121.916 kb on + strand at 121.916 kb on + strand at 121.916 kb on + strand at 121.916 kb on + strand at 121.916 kb on + strand at 121.916 kb on + strand at 121.917 kb on - strand at 121.917 kb on - strand at 121.917 kb on - strand at 121.917 kb on - strand at 122.074 kb on + strand at 122.075 kb on - strand at 122.185 kb on + strand at 122.193 kb on + strand at 122.193 kb on + strand at 122.194 kb on - strand at 122.194 kb on - strand at 122.217 kb on + strand at 122.217 kb on + strand at 122.217 kb on + strand at 122.217 kb on + strand at 122.217 kb on + strand at 122.218 kb on - strand at 122.218 kb on - strand at 122.218 kb on - strand at 122.218 kb on - strand at 122.218 kb on - strand at 122.471 kb on + strand, within Xcc-8004.134.1 at 122.471 kb on + strand, within Xcc-8004.134.1 at 122.472 kb on - strand, within Xcc-8004.134.1 at 122.472 kb on - strand, within Xcc-8004.134.1 at 122.472 kb on - strand, within Xcc-8004.134.1 at 122.472 kb on - strand, within Xcc-8004.134.1 at 122.472 kb on - strand, within Xcc-8004.134.1 at 122.472 kb on - strand, within Xcc-8004.134.1 at 122.472 kb on - strand, within Xcc-8004.134.1 at 122.606 kb on + strand, within Xcc-8004.134.1 at 122.607 kb on - strand, within Xcc-8004.134.1 at 122.607 kb on - strand, within Xcc-8004.134.1 at 122.607 kb on - strand, within Xcc-8004.134.1 at 122.844 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 120,581 + Xcc-8004.131.1 0.65 -0.7 120,581 + Xcc-8004.131.1 0.65 +1.4 120,581 + Xcc-8004.131.1 0.65 -1.9 120,581 + Xcc-8004.131.1 0.65 +0.3 120,581 + Xcc-8004.131.1 0.65 -1.3 120,581 + Xcc-8004.131.1 0.65 -1.2 120,581 + Xcc-8004.131.1 0.65 -0.4 120,581 + Xcc-8004.131.1 0.65 -2.1 120,581 + Xcc-8004.131.1 0.65 +0.7 120,582 - Xcc-8004.131.1 0.65 +0.0 120,582 - Xcc-8004.131.1 0.65 -0.1 120,582 - Xcc-8004.131.1 0.65 -0.5 120,582 - Xcc-8004.131.1 0.65 +0.1 120,582 - Xcc-8004.131.1 0.65 +2.3 120,582 - Xcc-8004.131.1 0.65 -0.1 120,582 - Xcc-8004.131.1 0.65 -1.9 120,582 - Xcc-8004.131.1 0.65 -0.2 120,582 - Xcc-8004.131.1 0.65 -0.4 120,582 - Xcc-8004.131.1 0.65 -2.6 120,582 - Xcc-8004.131.1 0.65 +1.4 120,582 - Xcc-8004.131.1 0.65 -0.9 120,897 - Xcc-8004.131.1 0.80 -0.7 120,897 - Xcc-8004.131.1 0.80 -1.0 120,897 - Xcc-8004.131.1 0.80 -1.6 121,101 + Xcc-8004.131.1 0.90 -0.4 121,102 - Xcc-8004.131.1 0.90 +1.4 121,102 - Xcc-8004.131.1 0.90 +2.1 121,124 + -1.1 121,124 + -2.4 121,183 + -0.1 121,183 + +1.1 121,220 + -0.5 121,220 + -0.6 121,220 + -0.8 121,220 + +0.6 121,220 + +0.1 121,220 + -0.4 121,220 + -0.9 121,220 + -1.6 121,220 + +1.5 121,221 - -0.2 121,221 - +0.1 121,221 - +1.6 121,221 - -2.4 121,221 - -0.3 121,221 - -0.5 121,221 - -2.5 121,224 + +0.1 121,224 + +1.4 121,224 + -0.6 121,224 + -2.8 121,224 + -0.5 121,225 - +0.4 121,225 - +0.1 121,225 - -0.4 121,260 - -1.2 121,262 + +0.1 121,263 - -2.1 121,286 + -1.0 121,287 - -2.2 121,287 - -1.1 121,287 - +0.4 121,287 - -0.7 121,293 + +0.4 121,293 + -0.4 121,294 - -0.3 121,294 - -0.4 121,366 + -1.9 121,366 + -0.3 121,437 + +0.4 121,437 + -3.3 121,437 + +2.1 121,437 + -0.7 121,437 + +0.7 121,437 + -0.9 121,437 + -0.1 121,438 - -3.2 121,438 - -2.7 121,438 - +1.0 121,438 - -1.2 121,438 - -1.6 121,454 + -1.0 121,454 + -1.6 121,454 + -0.4 121,455 - +0.1 121,455 - -0.3 121,467 + +0.4 121,467 + -0.1 121,468 - -0.8 121,468 - -0.4 121,578 + Xcc-8004.133.1 0.22 +0.9 121,578 + Xcc-8004.133.1 0.22 -0.3 121,578 + Xcc-8004.133.1 0.22 -0.1 121,579 - Xcc-8004.133.1 0.23 -1.4 121,579 - Xcc-8004.133.1 0.23 -1.5 121,579 - Xcc-8004.133.1 0.23 +0.2 121,579 - Xcc-8004.133.1 0.23 -0.1 121,604 + Xcc-8004.133.1 0.29 +0.4 121,736 + Xcc-8004.133.1 0.62 -0.4 121,736 + Xcc-8004.133.1 0.62 +0.5 121,737 - Xcc-8004.133.1 0.63 -2.7 121,737 - Xcc-8004.133.1 0.63 -3.0 121,737 - Xcc-8004.133.1 0.63 -1.3 121,781 + Xcc-8004.133.1 0.74 -1.0 121,782 - Xcc-8004.133.1 0.74 -0.6 121,882 + +0.4 121,882 + +1.0 121,883 - -0.7 121,883 - +2.0 121,883 - -0.0 121,916 + -0.3 121,916 + -0.5 121,916 + -0.1 121,916 + +0.4 121,916 + +1.1 121,916 + +2.1 121,917 - +0.2 121,917 - -0.6 121,917 - -0.6 121,917 - +1.4 122,074 + -0.4 122,075 - -0.2 122,185 + -1.6 122,193 + -2.5 122,193 + -2.1 122,194 - +2.4 122,194 - -0.3 122,217 + -0.4 122,217 + -3.1 122,217 + -2.3 122,217 + +0.5 122,217 + -1.7 122,218 - -1.6 122,218 - +1.6 122,218 - -0.0 122,218 - -1.4 122,218 - +0.7 122,471 + Xcc-8004.134.1 0.46 -1.0 122,471 + Xcc-8004.134.1 0.46 -1.9 122,472 - Xcc-8004.134.1 0.46 -0.4 122,472 - Xcc-8004.134.1 0.46 +0.8 122,472 - Xcc-8004.134.1 0.46 -1.5 122,472 - Xcc-8004.134.1 0.46 +0.3 122,472 - Xcc-8004.134.1 0.46 +0.3 122,472 - Xcc-8004.134.1 0.46 -0.7 122,472 - Xcc-8004.134.1 0.46 -0.4 122,606 + Xcc-8004.134.1 0.75 -0.8 122,607 - Xcc-8004.134.1 0.75 -0.4 122,607 - Xcc-8004.134.1 0.75 -0.1 122,607 - Xcc-8004.134.1 0.75 -0.6 122,844 + +2.6
Or see this region's nucleotide sequence