Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.108.1 and Xcc-8004.109.1 are separated by 816 nucleotides Xcc-8004.109.1 and Xcc-8004.111.1 are separated by 15 nucleotides Xcc-8004.111.1 and Xcc-8004.112.1 are separated by 135 nucleotides
Xcc-8004.108.1: Xcc-8004.108.1 - Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1), at 96,699 to 97,031
Xcc-8004.108.1
Xcc-8004.109.1: Xcc-8004.109.1 - L-Proline/Glycine betaine transporter ProP, at 97,848 to 99,338
Xcc-8004.109.1
Xcc-8004.111.1: Xcc-8004.111.1 - FIG01211861: hypothetical protein, at 99,354 to 99,812
Xcc-8004.111.1
Xcc-8004.112.1: Xcc-8004.112.1 - Staphylolytic protease preproenzyme LasA, at 99,948 to 100,778
Xcc-8004.112.1
Position (kb) 97
98
99
100 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 97.071 kb on + strand at 97.071 kb on + strand at 97.071 kb on + strand at 97.072 kb on - strand at 97.116 kb on - strand at 97.116 kb on - strand at 97.116 kb on - strand at 97.116 kb on - strand at 97.116 kb on - strand at 97.116 kb on - strand at 97.116 kb on - strand at 97.116 kb on - strand at 97.242 kb on + strand at 97.272 kb on + strand at 97.273 kb on - strand at 97.280 kb on + strand at 97.280 kb on + strand at 97.281 kb on - strand at 97.281 kb on - strand at 97.281 kb on - strand at 97.345 kb on - strand at 97.345 kb on - strand at 97.345 kb on - strand at 97.348 kb on - strand at 97.379 kb on - strand at 97.406 kb on + strand at 97.407 kb on - strand at 97.432 kb on + strand at 97.444 kb on + strand at 97.445 kb on - strand at 97.508 kb on + strand at 97.643 kb on + strand at 97.643 kb on + strand at 97.643 kb on + strand at 97.643 kb on + strand at 97.643 kb on + strand at 97.643 kb on + strand at 97.644 kb on - strand at 97.644 kb on - strand at 97.765 kb on - strand at 97.793 kb on + strand at 97.793 kb on + strand at 97.794 kb on - strand at 97.794 kb on - strand at 97.798 kb on + strand at 97.798 kb on + strand at 97.799 kb on - strand at 97.799 kb on - strand at 97.799 kb on - strand at 97.847 kb on + strand at 97.848 kb on - strand at 98.007 kb on + strand, within Xcc-8004.109.1 at 98.007 kb on + strand, within Xcc-8004.109.1 at 98.008 kb on - strand, within Xcc-8004.109.1 at 98.013 kb on + strand, within Xcc-8004.109.1 at 98.013 kb on + strand, within Xcc-8004.109.1 at 98.013 kb on + strand, within Xcc-8004.109.1 at 98.013 kb on + strand, within Xcc-8004.109.1 at 98.013 kb on + strand, within Xcc-8004.109.1 at 98.014 kb on - strand, within Xcc-8004.109.1 at 98.014 kb on - strand, within Xcc-8004.109.1 at 98.131 kb on + strand, within Xcc-8004.109.1 at 98.131 kb on + strand, within Xcc-8004.109.1 at 98.131 kb on + strand, within Xcc-8004.109.1 at 98.132 kb on - strand, within Xcc-8004.109.1 at 98.132 kb on - strand, within Xcc-8004.109.1 at 98.155 kb on - strand, within Xcc-8004.109.1 at 98.232 kb on + strand, within Xcc-8004.109.1 at 98.232 kb on + strand, within Xcc-8004.109.1 at 98.233 kb on - strand, within Xcc-8004.109.1 at 98.233 kb on - strand, within Xcc-8004.109.1 at 98.233 kb on - strand, within Xcc-8004.109.1 at 98.233 kb on - strand, within Xcc-8004.109.1 at 98.340 kb on + strand, within Xcc-8004.109.1 at 98.403 kb on + strand, within Xcc-8004.109.1 at 98.403 kb on + strand, within Xcc-8004.109.1 at 98.403 kb on + strand, within Xcc-8004.109.1 at 98.403 kb on + strand, within Xcc-8004.109.1 at 98.403 kb on + strand, within Xcc-8004.109.1 at 98.403 kb on + strand, within Xcc-8004.109.1 at 98.404 kb on - strand, within Xcc-8004.109.1 at 98.404 kb on - strand, within Xcc-8004.109.1 at 98.404 kb on - strand, within Xcc-8004.109.1 at 98.404 kb on - strand, within Xcc-8004.109.1 at 98.404 kb on - strand, within Xcc-8004.109.1 at 98.404 kb on - strand, within Xcc-8004.109.1 at 98.404 kb on - strand, within Xcc-8004.109.1 at 98.404 kb on - strand, within Xcc-8004.109.1 at 98.405 kb on + strand, within Xcc-8004.109.1 at 98.405 kb on + strand, within Xcc-8004.109.1 at 98.406 kb on - strand, within Xcc-8004.109.1 at 98.523 kb on + strand, within Xcc-8004.109.1 at 98.523 kb on + strand, within Xcc-8004.109.1 at 98.523 kb on + strand, within Xcc-8004.109.1 at 98.523 kb on + strand, within Xcc-8004.109.1 at 98.523 kb on + strand, within Xcc-8004.109.1 at 98.523 kb on + strand, within Xcc-8004.109.1 at 98.524 kb on - strand, within Xcc-8004.109.1 at 98.524 kb on - strand, within Xcc-8004.109.1 at 98.524 kb on - strand, within Xcc-8004.109.1 at 98.524 kb on - strand, within Xcc-8004.109.1 at 98.524 kb on - strand, within Xcc-8004.109.1 at 98.524 kb on - strand, within Xcc-8004.109.1 at 98.524 kb on - strand, within Xcc-8004.109.1 at 98.565 kb on + strand, within Xcc-8004.109.1 at 98.565 kb on + strand, within Xcc-8004.109.1 at 98.565 kb on + strand, within Xcc-8004.109.1 at 98.566 kb on - strand, within Xcc-8004.109.1 at 98.567 kb on + strand, within Xcc-8004.109.1 at 98.691 kb on + strand, within Xcc-8004.109.1 at 98.691 kb on + strand, within Xcc-8004.109.1 at 98.692 kb on - strand, within Xcc-8004.109.1 at 98.692 kb on - strand, within Xcc-8004.109.1 at 98.692 kb on - strand, within Xcc-8004.109.1 at 98.706 kb on + strand, within Xcc-8004.109.1 at 98.706 kb on + strand, within Xcc-8004.109.1 at 98.706 kb on + strand, within Xcc-8004.109.1 at 98.706 kb on + strand, within Xcc-8004.109.1 at 98.706 kb on + strand, within Xcc-8004.109.1 at 98.706 kb on + strand, within Xcc-8004.109.1 at 98.706 kb on + strand, within Xcc-8004.109.1 at 98.707 kb on - strand, within Xcc-8004.109.1 at 98.707 kb on - strand, within Xcc-8004.109.1 at 98.707 kb on - strand, within Xcc-8004.109.1 at 98.707 kb on - strand, within Xcc-8004.109.1 at 98.707 kb on - strand, within Xcc-8004.109.1 at 98.707 kb on - strand, within Xcc-8004.109.1 at 98.718 kb on + strand, within Xcc-8004.109.1 at 98.718 kb on + strand, within Xcc-8004.109.1 at 98.718 kb on + strand, within Xcc-8004.109.1 at 98.718 kb on + strand, within Xcc-8004.109.1 at 98.719 kb on - strand, within Xcc-8004.109.1 at 98.719 kb on - strand, within Xcc-8004.109.1 at 98.719 kb on - strand, within Xcc-8004.109.1 at 98.719 kb on - strand, within Xcc-8004.109.1 at 98.739 kb on + strand, within Xcc-8004.109.1 at 99.006 kb on + strand, within Xcc-8004.109.1 at 99.006 kb on + strand, within Xcc-8004.109.1 at 99.006 kb on + strand, within Xcc-8004.109.1 at 99.006 kb on + strand, within Xcc-8004.109.1 at 99.006 kb on + strand, within Xcc-8004.109.1 at 99.006 kb on + strand, within Xcc-8004.109.1 at 99.006 kb on + strand, within Xcc-8004.109.1 at 99.007 kb on - strand, within Xcc-8004.109.1 at 99.021 kb on + strand, within Xcc-8004.109.1 at 99.021 kb on + strand, within Xcc-8004.109.1 at 99.022 kb on - strand, within Xcc-8004.109.1 at 99.132 kb on + strand, within Xcc-8004.109.1 at 99.132 kb on + strand, within Xcc-8004.109.1 at 99.132 kb on + strand, within Xcc-8004.109.1 at 99.133 kb on - strand, within Xcc-8004.109.1 at 99.133 kb on - strand, within Xcc-8004.109.1 at 99.133 kb on - strand, within Xcc-8004.109.1 at 99.133 kb on - strand, within Xcc-8004.109.1 at 99.133 kb on - strand, within Xcc-8004.109.1 at 99.133 kb on - strand, within Xcc-8004.109.1 at 99.133 kb on - strand, within Xcc-8004.109.1 at 99.133 kb on - strand, within Xcc-8004.109.1 at 99.133 kb on - strand, within Xcc-8004.109.1 at 99.135 kb on + strand, within Xcc-8004.109.1 at 99.135 kb on + strand, within Xcc-8004.109.1 at 99.136 kb on - strand, within Xcc-8004.109.1 at 99.136 kb on - strand, within Xcc-8004.109.1 at 99.136 kb on - strand, within Xcc-8004.109.1 at 99.136 kb on - strand, within Xcc-8004.109.1 at 99.136 kb on - strand, within Xcc-8004.109.1 at 99.136 kb on - strand, within Xcc-8004.109.1 at 99.136 kb on - strand, within Xcc-8004.109.1 at 99.337 kb on - strand at 99.394 kb on + strand at 99.421 kb on + strand, within Xcc-8004.111.1 at 99.421 kb on + strand, within Xcc-8004.111.1 at 99.421 kb on + strand, within Xcc-8004.111.1 at 99.422 kb on - strand, within Xcc-8004.111.1 at 99.924 kb on - strand at 99.924 kb on - strand at 99.924 kb on - strand at 99.924 kb on - strand at 99.924 kb on - strand at 99.924 kb on - strand at 100.064 kb on + strand, within Xcc-8004.112.1 at 100.064 kb on + strand, within Xcc-8004.112.1 at 100.064 kb on + strand, within Xcc-8004.112.1 at 100.064 kb on + strand, within Xcc-8004.112.1 at 100.064 kb on + strand, within Xcc-8004.112.1 at 100.064 kb on + strand, within Xcc-8004.112.1 at 100.065 kb on - strand, within Xcc-8004.112.1 at 100.065 kb on - strand, within Xcc-8004.112.1 at 100.065 kb on - strand, within Xcc-8004.112.1 at 100.065 kb on - strand, within Xcc-8004.112.1 at 100.065 kb on - strand, within Xcc-8004.112.1 at 100.065 kb on - strand, within Xcc-8004.112.1 at 100.187 kb on - strand, within Xcc-8004.112.1 at 100.187 kb on - strand, within Xcc-8004.112.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 97,071 + +0.2 97,071 + -2.6 97,071 + -1.3 97,072 - +0.7 97,116 - -0.2 97,116 - +0.8 97,116 - -0.9 97,116 - -0.8 97,116 - -0.6 97,116 - -0.2 97,116 - +0.3 97,116 - +0.1 97,242 + -0.0 97,272 + +0.5 97,273 - +0.3 97,280 + +0.2 97,280 + -0.2 97,281 - +1.3 97,281 - +0.6 97,281 - +0.6 97,345 - +0.6 97,345 - +0.6 97,345 - +0.5 97,348 - -2.2 97,379 - +2.1 97,406 + +0.3 97,407 - -1.2 97,432 + -0.2 97,444 + +1.1 97,445 - -0.8 97,508 + -0.5 97,643 + -0.4 97,643 + +0.2 97,643 + +1.3 97,643 + +1.6 97,643 + +0.7 97,643 + +0.2 97,644 - -2.0 97,644 - -0.6 97,765 - +0.2 97,793 + +1.1 97,793 + -0.2 97,794 - -1.8 97,794 - -2.0 97,798 + +0.1 97,798 + +0.5 97,799 - -0.4 97,799 - +0.1 97,799 - +2.4 97,847 + -1.5 97,848 - +0.9 98,007 + Xcc-8004.109.1 0.11 -2.9 98,007 + Xcc-8004.109.1 0.11 -0.3 98,008 - Xcc-8004.109.1 0.11 -1.0 98,013 + Xcc-8004.109.1 0.11 -0.1 98,013 + Xcc-8004.109.1 0.11 -1.8 98,013 + Xcc-8004.109.1 0.11 -1.5 98,013 + Xcc-8004.109.1 0.11 -1.9 98,013 + Xcc-8004.109.1 0.11 -2.2 98,014 - Xcc-8004.109.1 0.11 +1.1 98,014 - Xcc-8004.109.1 0.11 -3.1 98,131 + Xcc-8004.109.1 0.19 -2.2 98,131 + Xcc-8004.109.1 0.19 -1.3 98,131 + Xcc-8004.109.1 0.19 -1.8 98,132 - Xcc-8004.109.1 0.19 +0.8 98,132 - Xcc-8004.109.1 0.19 -0.7 98,155 - Xcc-8004.109.1 0.21 +0.5 98,232 + Xcc-8004.109.1 0.26 +0.2 98,232 + Xcc-8004.109.1 0.26 +0.5 98,233 - Xcc-8004.109.1 0.26 -0.9 98,233 - Xcc-8004.109.1 0.26 -2.0 98,233 - Xcc-8004.109.1 0.26 +0.1 98,233 - Xcc-8004.109.1 0.26 -2.4 98,340 + Xcc-8004.109.1 0.33 +0.8 98,403 + Xcc-8004.109.1 0.37 -0.3 98,403 + Xcc-8004.109.1 0.37 -3.0 98,403 + Xcc-8004.109.1 0.37 +0.1 98,403 + Xcc-8004.109.1 0.37 -1.4 98,403 + Xcc-8004.109.1 0.37 -2.4 98,403 + Xcc-8004.109.1 0.37 -2.5 98,404 - Xcc-8004.109.1 0.37 -1.3 98,404 - Xcc-8004.109.1 0.37 -0.1 98,404 - Xcc-8004.109.1 0.37 -1.6 98,404 - Xcc-8004.109.1 0.37 -0.4 98,404 - Xcc-8004.109.1 0.37 -2.0 98,404 - Xcc-8004.109.1 0.37 -1.3 98,404 - Xcc-8004.109.1 0.37 -0.7 98,404 - Xcc-8004.109.1 0.37 +0.0 98,405 + Xcc-8004.109.1 0.37 -1.3 98,405 + Xcc-8004.109.1 0.37 -0.7 98,406 - Xcc-8004.109.1 0.37 +1.9 98,523 + Xcc-8004.109.1 0.45 +0.5 98,523 + Xcc-8004.109.1 0.45 -1.4 98,523 + Xcc-8004.109.1 0.45 -0.8 98,523 + Xcc-8004.109.1 0.45 -1.5 98,523 + Xcc-8004.109.1 0.45 -0.7 98,523 + Xcc-8004.109.1 0.45 -2.3 98,524 - Xcc-8004.109.1 0.45 +1.9 98,524 - Xcc-8004.109.1 0.45 -0.6 98,524 - Xcc-8004.109.1 0.45 -1.9 98,524 - Xcc-8004.109.1 0.45 -3.0 98,524 - Xcc-8004.109.1 0.45 -0.3 98,524 - Xcc-8004.109.1 0.45 -3.0 98,524 - Xcc-8004.109.1 0.45 -1.1 98,565 + Xcc-8004.109.1 0.48 -0.0 98,565 + Xcc-8004.109.1 0.48 -1.6 98,565 + Xcc-8004.109.1 0.48 +1.0 98,566 - Xcc-8004.109.1 0.48 -0.0 98,567 + Xcc-8004.109.1 0.48 -0.6 98,691 + Xcc-8004.109.1 0.57 -1.6 98,691 + Xcc-8004.109.1 0.57 -3.3 98,692 - Xcc-8004.109.1 0.57 -1.5 98,692 - Xcc-8004.109.1 0.57 -0.6 98,692 - Xcc-8004.109.1 0.57 -2.0 98,706 + Xcc-8004.109.1 0.58 -0.7 98,706 + Xcc-8004.109.1 0.58 -2.1 98,706 + Xcc-8004.109.1 0.58 -2.9 98,706 + Xcc-8004.109.1 0.58 -0.2 98,706 + Xcc-8004.109.1 0.58 -1.3 98,706 + Xcc-8004.109.1 0.58 +0.3 98,706 + Xcc-8004.109.1 0.58 -0.3 98,707 - Xcc-8004.109.1 0.58 +0.1 98,707 - Xcc-8004.109.1 0.58 -0.3 98,707 - Xcc-8004.109.1 0.58 -0.5 98,707 - Xcc-8004.109.1 0.58 -1.9 98,707 - Xcc-8004.109.1 0.58 +0.9 98,707 - Xcc-8004.109.1 0.58 -0.4 98,718 + Xcc-8004.109.1 0.58 +2.9 98,718 + Xcc-8004.109.1 0.58 -1.5 98,718 + Xcc-8004.109.1 0.58 -0.5 98,718 + Xcc-8004.109.1 0.58 -0.6 98,719 - Xcc-8004.109.1 0.58 -1.4 98,719 - Xcc-8004.109.1 0.58 +0.5 98,719 - Xcc-8004.109.1 0.58 -2.9 98,719 - Xcc-8004.109.1 0.58 +3.6 98,739 + Xcc-8004.109.1 0.60 +0.2 99,006 + Xcc-8004.109.1 0.78 -0.7 99,006 + Xcc-8004.109.1 0.78 -0.8 99,006 + Xcc-8004.109.1 0.78 -1.4 99,006 + Xcc-8004.109.1 0.78 -1.7 99,006 + Xcc-8004.109.1 0.78 -2.7 99,006 + Xcc-8004.109.1 0.78 -0.5 99,006 + Xcc-8004.109.1 0.78 -1.3 99,007 - Xcc-8004.109.1 0.78 -3.3 99,021 + Xcc-8004.109.1 0.79 -3.2 99,021 + Xcc-8004.109.1 0.79 -0.9 99,022 - Xcc-8004.109.1 0.79 -2.0 99,132 + Xcc-8004.109.1 0.86 -2.9 99,132 + Xcc-8004.109.1 0.86 -1.8 99,132 + Xcc-8004.109.1 0.86 -0.7 99,133 - Xcc-8004.109.1 0.86 -0.5 99,133 - Xcc-8004.109.1 0.86 -1.7 99,133 - Xcc-8004.109.1 0.86 -1.2 99,133 - Xcc-8004.109.1 0.86 -0.3 99,133 - Xcc-8004.109.1 0.86 -0.5 99,133 - Xcc-8004.109.1 0.86 +0.6 99,133 - Xcc-8004.109.1 0.86 -2.1 99,133 - Xcc-8004.109.1 0.86 +1.0 99,133 - Xcc-8004.109.1 0.86 -1.1 99,135 + Xcc-8004.109.1 0.86 -1.2 99,135 + Xcc-8004.109.1 0.86 +0.9 99,136 - Xcc-8004.109.1 0.86 -2.8 99,136 - Xcc-8004.109.1 0.86 -2.8 99,136 - Xcc-8004.109.1 0.86 -2.1 99,136 - Xcc-8004.109.1 0.86 -0.1 99,136 - Xcc-8004.109.1 0.86 -0.8 99,136 - Xcc-8004.109.1 0.86 -1.6 99,136 - Xcc-8004.109.1 0.86 -0.7 99,337 - +0.3 99,394 + +0.7 99,421 + Xcc-8004.111.1 0.15 +1.1 99,421 + Xcc-8004.111.1 0.15 -1.6 99,421 + Xcc-8004.111.1 0.15 -0.8 99,422 - Xcc-8004.111.1 0.15 +1.3 99,924 - +2.2 99,924 - +2.2 99,924 - +0.2 99,924 - +0.7 99,924 - -0.3 99,924 - -1.3 100,064 + Xcc-8004.112.1 0.14 +0.9 100,064 + Xcc-8004.112.1 0.14 +1.6 100,064 + Xcc-8004.112.1 0.14 +2.1 100,064 + Xcc-8004.112.1 0.14 -0.8 100,064 + Xcc-8004.112.1 0.14 +2.3 100,064 + Xcc-8004.112.1 0.14 -0.4 100,065 - Xcc-8004.112.1 0.14 +0.3 100,065 - Xcc-8004.112.1 0.14 -0.1 100,065 - Xcc-8004.112.1 0.14 -0.2 100,065 - Xcc-8004.112.1 0.14 +1.5 100,065 - Xcc-8004.112.1 0.14 +1.2 100,065 - Xcc-8004.112.1 0.14 +0.6 100,187 - Xcc-8004.112.1 0.29 +0.6 100,187 - Xcc-8004.112.1 0.29 -0.8
Or see this region's nucleotide sequence