Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07250

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07240 and PGA1_c07250 overlap by 1 nucleotidesPGA1_c07250 and PGA1_c07260 are separated by 17 nucleotides PGA1_c07240: PGA1_c07240 - 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92) (from data), at 744,289 to 745,281 _c07240 PGA1_c07250: PGA1_c07250 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data), at 745,281 to 747,155 _c07250 PGA1_c07260: PGA1_c07260 - putative inositol 2-dehydrogenase, at 747,173 to 748,378 _c07260 Position (kb) 745 746 747 748Strain fitness (log2 ratio) -2 -1 0 1at 744.310 kb on - strandat 744.352 kb on + strandat 744.376 kb on - strandat 744.442 kb on - strand, within PGA1_c07240at 744.571 kb on + strand, within PGA1_c07240at 744.627 kb on - strand, within PGA1_c07240at 744.723 kb on - strand, within PGA1_c07240at 744.733 kb on + strand, within PGA1_c07240at 744.733 kb on + strand, within PGA1_c07240at 744.740 kb on + strand, within PGA1_c07240at 744.741 kb on - strand, within PGA1_c07240at 744.789 kb on + strand, within PGA1_c07240at 744.792 kb on - strand, within PGA1_c07240at 744.792 kb on - strand, within PGA1_c07240at 744.827 kb on + strand, within PGA1_c07240at 744.853 kb on - strand, within PGA1_c07240at 744.862 kb on + strand, within PGA1_c07240at 744.870 kb on - strand, within PGA1_c07240at 744.889 kb on - strand, within PGA1_c07240at 744.944 kb on - strand, within PGA1_c07240at 744.969 kb on + strand, within PGA1_c07240at 745.017 kb on + strand, within PGA1_c07240at 745.049 kb on - strand, within PGA1_c07240at 745.049 kb on - strand, within PGA1_c07240at 745.051 kb on + strand, within PGA1_c07240at 745.079 kb on + strand, within PGA1_c07240at 745.089 kb on + strand, within PGA1_c07240at 745.206 kb on + strandat 745.206 kb on + strandat 745.206 kb on + strandat 745.214 kb on - strandat 745.251 kb on + strandat 745.251 kb on + strandat 745.251 kb on + strandat 745.251 kb on + strandat 745.251 kb on + strandat 745.259 kb on - strandat 745.259 kb on - strandat 745.259 kb on - strandat 745.288 kb on + strandat 745.296 kb on - strandat 745.383 kb on + strandat 745.398 kb on + strandat 745.406 kb on - strandat 745.462 kb on + strandat 745.470 kb on - strand, within PGA1_c07250at 745.501 kb on + strand, within PGA1_c07250at 745.509 kb on - strand, within PGA1_c07250at 745.514 kb on + strand, within PGA1_c07250at 745.518 kb on + strand, within PGA1_c07250at 745.526 kb on - strand, within PGA1_c07250at 745.564 kb on - strand, within PGA1_c07250at 745.573 kb on - strand, within PGA1_c07250at 745.617 kb on - strand, within PGA1_c07250at 745.634 kb on + strand, within PGA1_c07250at 745.696 kb on - strand, within PGA1_c07250at 745.740 kb on + strand, within PGA1_c07250at 745.765 kb on + strand, within PGA1_c07250at 745.767 kb on - strand, within PGA1_c07250at 745.792 kb on - strand, within PGA1_c07250at 745.861 kb on - strand, within PGA1_c07250at 745.907 kb on + strand, within PGA1_c07250at 745.917 kb on + strand, within PGA1_c07250at 745.958 kb on + strand, within PGA1_c07250at 745.966 kb on - strand, within PGA1_c07250at 745.966 kb on - strand, within PGA1_c07250at 746.003 kb on + strand, within PGA1_c07250at 746.047 kb on + strand, within PGA1_c07250at 746.072 kb on - strand, within PGA1_c07250at 746.072 kb on - strand, within PGA1_c07250at 746.083 kb on + strand, within PGA1_c07250at 746.151 kb on + strand, within PGA1_c07250at 746.189 kb on + strand, within PGA1_c07250at 746.306 kb on + strand, within PGA1_c07250at 746.306 kb on + strand, within PGA1_c07250at 746.334 kb on - strand, within PGA1_c07250at 746.355 kb on + strand, within PGA1_c07250at 746.370 kb on + strand, within PGA1_c07250at 746.400 kb on + strand, within PGA1_c07250at 746.402 kb on + strand, within PGA1_c07250at 746.410 kb on + strand, within PGA1_c07250at 746.426 kb on - strand, within PGA1_c07250at 746.468 kb on + strand, within PGA1_c07250at 746.487 kb on - strand, within PGA1_c07250at 746.489 kb on + strand, within PGA1_c07250at 746.504 kb on + strand, within PGA1_c07250at 746.506 kb on - strand, within PGA1_c07250at 746.512 kb on - strand, within PGA1_c07250at 746.512 kb on - strand, within PGA1_c07250at 746.555 kb on + strand, within PGA1_c07250at 746.563 kb on + strand, within PGA1_c07250at 746.571 kb on - strand, within PGA1_c07250at 746.576 kb on - strand, within PGA1_c07250at 746.709 kb on - strand, within PGA1_c07250at 746.709 kb on - strand, within PGA1_c07250at 746.829 kb on + strand, within PGA1_c07250at 746.829 kb on + strand, within PGA1_c07250at 746.829 kb on + strand, within PGA1_c07250at 746.829 kb on + strand, within PGA1_c07250at 746.837 kb on - strand, within PGA1_c07250at 746.837 kb on - strand, within PGA1_c07250at 746.844 kb on + strand, within PGA1_c07250at 746.852 kb on + strand, within PGA1_c07250at 746.875 kb on - strand, within PGA1_c07250at 746.937 kb on + strand, within PGA1_c07250at 746.937 kb on - strand, within PGA1_c07250at 747.035 kb on + strandat 747.078 kb on - strandat 747.079 kb on + strandat 747.087 kb on - strandat 747.167 kb on + strandat 747.169 kb on - strandat 747.276 kb on - strandat 747.356 kb on + strand, within PGA1_c07260at 747.363 kb on + strand, within PGA1_c07260at 747.461 kb on - strand, within PGA1_c07260at 747.492 kb on - strand, within PGA1_c07260at 747.554 kb on + strand, within PGA1_c07260at 747.557 kb on - strand, within PGA1_c07260at 747.642 kb on - strand, within PGA1_c07260at 747.670 kb on + strand, within PGA1_c07260at 747.679 kb on - strand, within PGA1_c07260at 747.706 kb on + strand, within PGA1_c07260at 747.724 kb on - strand, within PGA1_c07260at 747.803 kb on - strand, within PGA1_c07260at 747.804 kb on - strand, within PGA1_c07260at 747.804 kb on - strand, within PGA1_c07260at 747.806 kb on + strand, within PGA1_c07260at 747.812 kb on + strand, within PGA1_c07260at 747.898 kb on + strand, within PGA1_c07260at 747.898 kb on + strand, within PGA1_c07260at 747.906 kb on - strand, within PGA1_c07260at 747.906 kb on - strand, within PGA1_c07260at 747.906 kb on - strand, within PGA1_c07260at 747.945 kb on - strand, within PGA1_c07260at 747.947 kb on + strand, within PGA1_c07260at 748.052 kb on + strand, within PGA1_c07260at 748.090 kb on - strand, within PGA1_c07260at 748.101 kb on + strand, within PGA1_c07260at 748.109 kb on - strand, within PGA1_c07260at 748.139 kb on - strand, within PGA1_c07260at 748.147 kb on + strand, within PGA1_c07260

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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744,310 - +0.2
744,352 + +0.1
744,376 - -0.3
744,442 - PGA1_c07240 0.15 -2.1
744,571 + PGA1_c07240 0.28 -0.0
744,627 - PGA1_c07240 0.34 -0.4
744,723 - PGA1_c07240 0.44 -1.1
744,733 + PGA1_c07240 0.45 -0.9
744,733 + PGA1_c07240 0.45 -0.7
744,740 + PGA1_c07240 0.45 +0.1
744,741 - PGA1_c07240 0.46 -0.0
744,789 + PGA1_c07240 0.50 +0.5
744,792 - PGA1_c07240 0.51 -0.5
744,792 - PGA1_c07240 0.51 -0.8
744,827 + PGA1_c07240 0.54 -0.5
744,853 - PGA1_c07240 0.57 -0.9
744,862 + PGA1_c07240 0.58 -0.7
744,870 - PGA1_c07240 0.59 -0.1
744,889 - PGA1_c07240 0.60 +0.6
744,944 - PGA1_c07240 0.66 -0.3
744,969 + PGA1_c07240 0.68 +0.5
745,017 + PGA1_c07240 0.73 -1.9
745,049 - PGA1_c07240 0.77 -0.4
745,049 - PGA1_c07240 0.77 +0.8
745,051 + PGA1_c07240 0.77 -0.2
745,079 + PGA1_c07240 0.80 -1.1
745,089 + PGA1_c07240 0.81 +0.2
745,206 + -0.1
745,206 + +0.5
745,206 + -0.2
745,214 - -0.7
745,251 + -0.0
745,251 + +0.2
745,251 + +1.5
745,251 + +0.7
745,251 + +0.8
745,259 - -1.1
745,259 - +0.1
745,259 - +0.3
745,288 + -1.5
745,296 - +0.5
745,383 + +0.3
745,398 + -0.1
745,406 - -0.4
745,462 + -0.5
745,470 - PGA1_c07250 0.10 -0.4
745,501 + PGA1_c07250 0.12 +0.1
745,509 - PGA1_c07250 0.12 -0.1
745,514 + PGA1_c07250 0.12 +0.5
745,518 + PGA1_c07250 0.13 +1.0
745,526 - PGA1_c07250 0.13 -1.4
745,564 - PGA1_c07250 0.15 -2.3
745,573 - PGA1_c07250 0.16 -0.8
745,617 - PGA1_c07250 0.18 -1.3
745,634 + PGA1_c07250 0.19 +0.2
745,696 - PGA1_c07250 0.22 -0.7
745,740 + PGA1_c07250 0.24 +0.7
745,765 + PGA1_c07250 0.26 +0.8
745,767 - PGA1_c07250 0.26 +0.1
745,792 - PGA1_c07250 0.27 +1.6
745,861 - PGA1_c07250 0.31 -0.5
745,907 + PGA1_c07250 0.33 -0.8
745,917 + PGA1_c07250 0.34 +1.6
745,958 + PGA1_c07250 0.36 -0.9
745,966 - PGA1_c07250 0.37 -1.1
745,966 - PGA1_c07250 0.37 -0.2
746,003 + PGA1_c07250 0.39 +0.2
746,047 + PGA1_c07250 0.41 +0.5
746,072 - PGA1_c07250 0.42 -0.6
746,072 - PGA1_c07250 0.42 -0.9
746,083 + PGA1_c07250 0.43 +0.5
746,151 + PGA1_c07250 0.46 +0.4
746,189 + PGA1_c07250 0.48 +0.3
746,306 + PGA1_c07250 0.55 +0.2
746,306 + PGA1_c07250 0.55 +0.1
746,334 - PGA1_c07250 0.56 -0.8
746,355 + PGA1_c07250 0.57 -1.8
746,370 + PGA1_c07250 0.58 -0.0
746,400 + PGA1_c07250 0.60 +0.4
746,402 + PGA1_c07250 0.60 -0.5
746,410 + PGA1_c07250 0.60 +0.4
746,426 - PGA1_c07250 0.61 -0.3
746,468 + PGA1_c07250 0.63 +0.4
746,487 - PGA1_c07250 0.64 +0.5
746,489 + PGA1_c07250 0.64 +0.4
746,504 + PGA1_c07250 0.65 -0.8
746,506 - PGA1_c07250 0.65 -0.5
746,512 - PGA1_c07250 0.66 -0.7
746,512 - PGA1_c07250 0.66 +0.9
746,555 + PGA1_c07250 0.68 -0.8
746,563 + PGA1_c07250 0.68 +0.5
746,571 - PGA1_c07250 0.69 +0.2
746,576 - PGA1_c07250 0.69 -0.0
746,709 - PGA1_c07250 0.76 +0.3
746,709 - PGA1_c07250 0.76 +0.4
746,829 + PGA1_c07250 0.83 +0.1
746,829 + PGA1_c07250 0.83 +0.8
746,829 + PGA1_c07250 0.83 -0.5
746,829 + PGA1_c07250 0.83 -0.4
746,837 - PGA1_c07250 0.83 -0.0
746,837 - PGA1_c07250 0.83 -0.7
746,844 + PGA1_c07250 0.83 +0.9
746,852 + PGA1_c07250 0.84 -0.6
746,875 - PGA1_c07250 0.85 -1.1
746,937 + PGA1_c07250 0.88 -0.3
746,937 - PGA1_c07250 0.88 +0.0
747,035 + +0.1
747,078 - +0.3
747,079 + +0.4
747,087 - -0.0
747,167 + -1.1
747,169 - -1.2
747,276 - +0.3
747,356 + PGA1_c07260 0.15 -0.3
747,363 + PGA1_c07260 0.16 -0.4
747,461 - PGA1_c07260 0.24 -1.0
747,492 - PGA1_c07260 0.26 -0.4
747,554 + PGA1_c07260 0.32 -0.5
747,557 - PGA1_c07260 0.32 +0.2
747,642 - PGA1_c07260 0.39 -0.3
747,670 + PGA1_c07260 0.41 +0.4
747,679 - PGA1_c07260 0.42 +0.4
747,706 + PGA1_c07260 0.44 -0.6
747,724 - PGA1_c07260 0.46 +1.2
747,803 - PGA1_c07260 0.52 +0.1
747,804 - PGA1_c07260 0.52 +1.0
747,804 - PGA1_c07260 0.52 +0.9
747,806 + PGA1_c07260 0.52 +0.7
747,812 + PGA1_c07260 0.53 +0.6
747,898 + PGA1_c07260 0.60 +0.3
747,898 + PGA1_c07260 0.60 -0.2
747,906 - PGA1_c07260 0.61 -0.7
747,906 - PGA1_c07260 0.61 -1.3
747,906 - PGA1_c07260 0.61 -1.5
747,945 - PGA1_c07260 0.64 +0.3
747,947 + PGA1_c07260 0.64 +0.9
748,052 + PGA1_c07260 0.73 +0.7
748,090 - PGA1_c07260 0.76 -0.4
748,101 + PGA1_c07260 0.77 +0.7
748,109 - PGA1_c07260 0.78 +0.2
748,139 - PGA1_c07260 0.80 +1.1
748,147 + PGA1_c07260 0.81 -0.2

Or see this region's nucleotide sequence