Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02300 and PGA1_262p02310 are separated by 122 nucleotides PGA1_262p02310 and PGA1_262p02320 are separated by 3 nucleotides PGA1_262p02320 and PGA1_262p02330 are separated by 2 nucleotides
PGA1_262p02300: PGA1_262p02300 - UDP-glucose/GDP-mannose dehydrogenase, at 251,609 to 252,880
_262p02300
PGA1_262p02310: PGA1_262p02310 - amidinotransferase, at 253,003 to 253,785
_262p02310
PGA1_262p02320: PGA1_262p02320 - putative acetolactate synthase isozyme 1 large subunit, at 253,789 to 255,444
_262p02320
PGA1_262p02330: PGA1_262p02330 - putative aspartate aminotransferase, at 255,447 to 256,634
_262p02330
Position (kb) 253
254
255
256 Strain fitness (log2 ratio) -1
0
1
2 at 252.836 kb on + strand at 252.949 kb on - strand at 253.203 kb on + strand, within PGA1_262p02310 at 253.290 kb on - strand, within PGA1_262p02310 at 253.290 kb on - strand, within PGA1_262p02310 at 253.372 kb on + strand, within PGA1_262p02310 at 253.445 kb on + strand, within PGA1_262p02310 at 253.469 kb on - strand, within PGA1_262p02310 at 253.623 kb on + strand, within PGA1_262p02310 at 253.623 kb on + strand, within PGA1_262p02310 at 253.631 kb on - strand, within PGA1_262p02310 at 253.694 kb on - strand, within PGA1_262p02310 at 253.694 kb on - strand, within PGA1_262p02310 at 253.765 kb on + strand at 253.878 kb on - strand at 253.887 kb on + strand at 253.904 kb on - strand at 253.988 kb on + strand, within PGA1_262p02320 at 254.372 kb on + strand, within PGA1_262p02320 at 254.377 kb on + strand, within PGA1_262p02320 at 254.380 kb on - strand, within PGA1_262p02320 at 254.590 kb on - strand, within PGA1_262p02320 at 254.592 kb on + strand, within PGA1_262p02320 at 254.655 kb on - strand, within PGA1_262p02320 at 254.765 kb on - strand, within PGA1_262p02320 at 254.770 kb on - strand, within PGA1_262p02320 at 254.847 kb on + strand, within PGA1_262p02320 at 254.855 kb on + strand, within PGA1_262p02320 at 254.863 kb on - strand, within PGA1_262p02320 at 254.863 kb on - strand, within PGA1_262p02320 at 254.863 kb on - strand, within PGA1_262p02320 at 254.863 kb on - strand, within PGA1_262p02320 at 254.863 kb on - strand, within PGA1_262p02320 at 254.948 kb on + strand, within PGA1_262p02320 at 254.956 kb on - strand, within PGA1_262p02320 at 254.994 kb on + strand, within PGA1_262p02320 at 255.013 kb on - strand, within PGA1_262p02320 at 255.142 kb on - strand, within PGA1_262p02320 at 255.198 kb on + strand, within PGA1_262p02320 at 255.201 kb on - strand, within PGA1_262p02320 at 255.228 kb on - strand, within PGA1_262p02320 at 255.246 kb on + strand, within PGA1_262p02320 at 255.254 kb on - strand, within PGA1_262p02320 at 255.463 kb on + strand at 255.598 kb on - strand, within PGA1_262p02330 at 255.674 kb on + strand, within PGA1_262p02330 at 255.674 kb on + strand, within PGA1_262p02330 at 255.705 kb on - strand, within PGA1_262p02330 at 255.794 kb on + strand, within PGA1_262p02330 at 255.873 kb on - strand, within PGA1_262p02330 at 255.895 kb on + strand, within PGA1_262p02330 at 255.962 kb on - strand, within PGA1_262p02330 at 256.032 kb on + strand, within PGA1_262p02330 at 256.094 kb on - strand, within PGA1_262p02330 at 256.100 kb on + strand, within PGA1_262p02330 at 256.225 kb on + strand, within PGA1_262p02330 at 256.432 kb on - strand, within PGA1_262p02330
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 252,836 + -1.3 252,949 - -0.2 253,203 + PGA1_262p02310 0.26 +0.8 253,290 - PGA1_262p02310 0.37 -0.3 253,290 - PGA1_262p02310 0.37 +0.7 253,372 + PGA1_262p02310 0.47 -0.2 253,445 + PGA1_262p02310 0.56 +0.0 253,469 - PGA1_262p02310 0.60 -0.7 253,623 + PGA1_262p02310 0.79 -0.1 253,623 + PGA1_262p02310 0.79 -0.0 253,631 - PGA1_262p02310 0.80 +1.1 253,694 - PGA1_262p02310 0.88 +0.4 253,694 - PGA1_262p02310 0.88 +0.3 253,765 + +0.2 253,878 - -0.4 253,887 + -0.2 253,904 - +0.2 253,988 + PGA1_262p02320 0.12 +0.1 254,372 + PGA1_262p02320 0.35 +0.3 254,377 + PGA1_262p02320 0.36 +0.0 254,380 - PGA1_262p02320 0.36 +0.7 254,590 - PGA1_262p02320 0.48 +0.8 254,592 + PGA1_262p02320 0.48 +0.2 254,655 - PGA1_262p02320 0.52 +0.8 254,765 - PGA1_262p02320 0.59 +0.6 254,770 - PGA1_262p02320 0.59 +0.1 254,847 + PGA1_262p02320 0.64 -0.1 254,855 + PGA1_262p02320 0.64 +0.7 254,863 - PGA1_262p02320 0.65 +0.5 254,863 - PGA1_262p02320 0.65 +0.1 254,863 - PGA1_262p02320 0.65 +0.5 254,863 - PGA1_262p02320 0.65 +1.2 254,863 - PGA1_262p02320 0.65 +1.8 254,948 + PGA1_262p02320 0.70 -0.2 254,956 - PGA1_262p02320 0.70 -0.5 254,994 + PGA1_262p02320 0.73 -0.2 255,013 - PGA1_262p02320 0.74 +0.9 255,142 - PGA1_262p02320 0.82 +0.4 255,198 + PGA1_262p02320 0.85 -0.2 255,201 - PGA1_262p02320 0.85 +0.6 255,228 - PGA1_262p02320 0.87 +0.7 255,246 + PGA1_262p02320 0.88 +0.1 255,254 - PGA1_262p02320 0.88 -0.0 255,463 + -1.7 255,598 - PGA1_262p02330 0.13 -0.3 255,674 + PGA1_262p02330 0.19 +0.0 255,674 + PGA1_262p02330 0.19 -1.6 255,705 - PGA1_262p02330 0.22 -0.2 255,794 + PGA1_262p02330 0.29 +1.5 255,873 - PGA1_262p02330 0.36 -0.5 255,895 + PGA1_262p02330 0.38 -0.1 255,962 - PGA1_262p02330 0.43 +0.3 256,032 + PGA1_262p02330 0.49 +1.6 256,094 - PGA1_262p02330 0.54 -1.2 256,100 + PGA1_262p02330 0.55 -0.2 256,225 + PGA1_262p02330 0.65 +0.3 256,432 - PGA1_262p02330 0.83 -0.6
Or see this region's nucleotide sequence