Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01550

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01530 and PGA1_262p01540 are separated by 117 nucleotidesPGA1_262p01540 and PGA1_262p01550 are separated by 56 nucleotidesPGA1_262p01550 and PGA1_262p01560 are separated by 121 nucleotides PGA1_262p01530: PGA1_262p01530 - transcriptional regulator, GntR family, at 167,879 to 169,348 _262p01530 PGA1_262p01540: PGA1_262p01540 - putative enoyl-CoA hydratase / isomerase, at 169,466 to 170,272 _262p01540 PGA1_262p01550: PGA1_262p01550 - acyl-CoA dehydrogenase, at 170,329 to 172,101 _262p01550 PGA1_262p01560: PGA1_262p01560 - putative transcriptional regulator, AraC family, at 172,223 to 173,248 _262p01560 Position (kb) 170 171 172 173Strain fitness (log2 ratio) -2 -1 0 1at 169.845 kb on + strand, within PGA1_262p01540at 169.907 kb on + strand, within PGA1_262p01540at 169.974 kb on - strand, within PGA1_262p01540at 169.984 kb on + strand, within PGA1_262p01540at 169.992 kb on - strand, within PGA1_262p01540at 170.188 kb on + strand, within PGA1_262p01540at 170.224 kb on - strandat 170.237 kb on + strandat 170.245 kb on - strandat 170.245 kb on - strandat 170.335 kb on - strandat 170.467 kb on - strandat 170.541 kb on + strand, within PGA1_262p01550at 170.667 kb on + strand, within PGA1_262p01550at 170.860 kb on + strand, within PGA1_262p01550at 170.898 kb on + strand, within PGA1_262p01550at 170.963 kb on + strand, within PGA1_262p01550at 171.008 kb on - strand, within PGA1_262p01550at 171.089 kb on - strand, within PGA1_262p01550at 171.147 kb on - strand, within PGA1_262p01550at 171.163 kb on - strand, within PGA1_262p01550at 171.163 kb on - strand, within PGA1_262p01550at 171.168 kb on - strand, within PGA1_262p01550at 171.227 kb on + strand, within PGA1_262p01550at 171.227 kb on + strand, within PGA1_262p01550at 171.309 kb on - strand, within PGA1_262p01550at 171.330 kb on + strand, within PGA1_262p01550at 171.512 kb on - strand, within PGA1_262p01550at 171.790 kb on + strand, within PGA1_262p01550at 171.830 kb on - strand, within PGA1_262p01550at 171.855 kb on + strand, within PGA1_262p01550at 171.855 kb on + strand, within PGA1_262p01550at 171.876 kb on - strand, within PGA1_262p01550at 171.951 kb on + strandat 172.081 kb on + strandat 172.096 kb on + strandat 172.107 kb on + strandat 172.117 kb on + strandat 172.125 kb on - strandat 172.212 kb on - strandat 172.229 kb on - strandat 172.239 kb on - strandat 172.371 kb on - strand, within PGA1_262p01560at 172.391 kb on - strand, within PGA1_262p01560at 172.391 kb on - strand, within PGA1_262p01560at 172.391 kb on - strand, within PGA1_262p01560at 172.401 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.640 kb on - strand, within PGA1_262p01560at 172.666 kb on + strand, within PGA1_262p01560at 172.721 kb on + strand, within PGA1_262p01560at 172.729 kb on - strand, within PGA1_262p01560at 172.735 kb on + strand, within PGA1_262p01560at 172.735 kb on + strand, within PGA1_262p01560at 172.735 kb on + strand, within PGA1_262p01560at 172.780 kb on + strand, within PGA1_262p01560at 172.788 kb on - strand, within PGA1_262p01560at 172.788 kb on - strand, within PGA1_262p01560at 172.815 kb on + strand, within PGA1_262p01560at 172.830 kb on - strand, within PGA1_262p01560at 172.855 kb on + strand, within PGA1_262p01560

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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169,845 + PGA1_262p01540 0.47 +0.5
169,907 + PGA1_262p01540 0.55 +0.1
169,974 - PGA1_262p01540 0.63 +0.4
169,984 + PGA1_262p01540 0.64 +0.6
169,992 - PGA1_262p01540 0.65 -0.7
170,188 + PGA1_262p01540 0.89 +0.6
170,224 - +0.6
170,237 + -0.2
170,245 - +1.2
170,245 - -0.4
170,335 - -0.1
170,467 - +0.2
170,541 + PGA1_262p01550 0.12 -0.3
170,667 + PGA1_262p01550 0.19 -0.2
170,860 + PGA1_262p01550 0.30 -0.1
170,898 + PGA1_262p01550 0.32 +0.8
170,963 + PGA1_262p01550 0.36 +0.2
171,008 - PGA1_262p01550 0.38 +0.3
171,089 - PGA1_262p01550 0.43 +0.1
171,147 - PGA1_262p01550 0.46 -1.8
171,163 - PGA1_262p01550 0.47 -1.3
171,163 - PGA1_262p01550 0.47 +1.5
171,168 - PGA1_262p01550 0.47 +0.1
171,227 + PGA1_262p01550 0.51 +0.6
171,227 + PGA1_262p01550 0.51 -0.8
171,309 - PGA1_262p01550 0.55 +0.6
171,330 + PGA1_262p01550 0.56 -2.1
171,512 - PGA1_262p01550 0.67 +0.7
171,790 + PGA1_262p01550 0.82 +0.5
171,830 - PGA1_262p01550 0.85 +0.6
171,855 + PGA1_262p01550 0.86 +0.5
171,855 + PGA1_262p01550 0.86 +0.3
171,876 - PGA1_262p01550 0.87 +0.9
171,951 + -0.1
172,081 + +0.1
172,096 + -1.4
172,107 + +1.2
172,117 + -0.7
172,125 - +0.3
172,212 - +0.1
172,229 - +0.1
172,239 - +1.4
172,371 - PGA1_262p01560 0.14 -1.0
172,391 - PGA1_262p01560 0.16 -0.0
172,391 - PGA1_262p01560 0.16 +0.7
172,391 - PGA1_262p01560 0.16 -0.5
172,401 + PGA1_262p01560 0.17 -0.1
172,507 + PGA1_262p01560 0.28 +0.0
172,507 + PGA1_262p01560 0.28 -1.2
172,507 + PGA1_262p01560 0.28 +0.1
172,507 + PGA1_262p01560 0.28 -0.9
172,507 + PGA1_262p01560 0.28 +0.6
172,507 + PGA1_262p01560 0.28 -0.9
172,507 + PGA1_262p01560 0.28 +1.3
172,507 + PGA1_262p01560 0.28 -0.4
172,507 + PGA1_262p01560 0.28 -0.7
172,507 + PGA1_262p01560 0.28 +1.2
172,507 + PGA1_262p01560 0.28 -0.3
172,515 - PGA1_262p01560 0.28 +0.4
172,515 - PGA1_262p01560 0.28 -0.1
172,515 - PGA1_262p01560 0.28 -0.1
172,515 - PGA1_262p01560 0.28 -0.6
172,515 - PGA1_262p01560 0.28 -0.5
172,515 - PGA1_262p01560 0.28 +0.4
172,515 - PGA1_262p01560 0.28 +0.5
172,515 - PGA1_262p01560 0.28 +0.1
172,515 - PGA1_262p01560 0.28 +0.4
172,515 - PGA1_262p01560 0.28 -0.7
172,515 - PGA1_262p01560 0.28 -1.3
172,515 - PGA1_262p01560 0.28 +0.0
172,515 - PGA1_262p01560 0.28 +0.6
172,640 - PGA1_262p01560 0.41 +1.1
172,666 + PGA1_262p01560 0.43 -0.8
172,721 + PGA1_262p01560 0.49 +1.2
172,729 - PGA1_262p01560 0.49 -0.7
172,735 + PGA1_262p01560 0.50 +0.2
172,735 + PGA1_262p01560 0.50 -0.2
172,735 + PGA1_262p01560 0.50 +1.3
172,780 + PGA1_262p01560 0.54 -0.7
172,788 - PGA1_262p01560 0.55 +0.5
172,788 - PGA1_262p01560 0.55 +1.3
172,815 + PGA1_262p01560 0.58 +0.4
172,830 - PGA1_262p01560 0.59 -0.7
172,855 + PGA1_262p01560 0.62 +1.2

Or see this region's nucleotide sequence