Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01520 and PGA1_262p01530 are separated by 219 nucleotides PGA1_262p01530 and PGA1_262p01540 are separated by 117 nucleotides PGA1_262p01540 and PGA1_262p01550 are separated by 56 nucleotides
PGA1_262p01520: PGA1_262p01520 - sarcosine oxidase 3 subunit beta, at 166,409 to 167,659
_262p01520
PGA1_262p01530: PGA1_262p01530 - transcriptional regulator, GntR family, at 167,879 to 169,348
_262p01530
PGA1_262p01540: PGA1_262p01540 - putative enoyl-CoA hydratase / isomerase, at 169,466 to 170,272
_262p01540
PGA1_262p01550: PGA1_262p01550 - acyl-CoA dehydrogenase, at 170,329 to 172,101
_262p01550
Position (kb) 167
168
169
170 Strain fitness (log2 ratio) -1
0
1 at 166.924 kb on - strand, within PGA1_262p01520 at 166.947 kb on - strand, within PGA1_262p01520 at 166.972 kb on + strand, within PGA1_262p01520 at 167.015 kb on - strand, within PGA1_262p01520 at 167.104 kb on - strand, within PGA1_262p01520 at 167.216 kb on + strand, within PGA1_262p01520 at 167.476 kb on + strand, within PGA1_262p01520 at 167.513 kb on + strand, within PGA1_262p01520 at 167.520 kb on - strand, within PGA1_262p01520 at 167.628 kb on + strand at 167.628 kb on + strand at 167.628 kb on + strand at 167.628 kb on + strand at 167.631 kb on - strand at 167.636 kb on - strand at 167.704 kb on - strand at 167.729 kb on + strand at 167.737 kb on - strand at 167.750 kb on + strand at 167.758 kb on - strand at 167.897 kb on + strand at 167.974 kb on - strand at 168.106 kb on + strand, within PGA1_262p01530 at 168.274 kb on - strand, within PGA1_262p01530 at 168.276 kb on + strand, within PGA1_262p01530 at 168.333 kb on - strand, within PGA1_262p01530 at 168.596 kb on - strand, within PGA1_262p01530 at 168.671 kb on + strand, within PGA1_262p01530 at 168.694 kb on - strand, within PGA1_262p01530 at 168.706 kb on + strand, within PGA1_262p01530 at 168.706 kb on - strand, within PGA1_262p01530 at 168.794 kb on + strand, within PGA1_262p01530 at 168.867 kb on + strand, within PGA1_262p01530 at 168.907 kb on - strand, within PGA1_262p01530 at 169.020 kb on + strand, within PGA1_262p01530 at 169.020 kb on + strand, within PGA1_262p01530 at 169.030 kb on + strand, within PGA1_262p01530 at 169.125 kb on - strand, within PGA1_262p01530 at 169.163 kb on - strand, within PGA1_262p01530 at 169.185 kb on + strand, within PGA1_262p01530 at 169.221 kb on - strand at 169.316 kb on - strand at 169.845 kb on + strand, within PGA1_262p01540 at 169.907 kb on + strand, within PGA1_262p01540 at 169.974 kb on - strand, within PGA1_262p01540 at 169.984 kb on + strand, within PGA1_262p01540 at 169.992 kb on - strand, within PGA1_262p01540 at 170.188 kb on + strand, within PGA1_262p01540 at 170.224 kb on - strand at 170.237 kb on + strand at 170.245 kb on - strand at 170.245 kb on - strand at 170.335 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 166,924 - PGA1_262p01520 0.41 -0.9 166,947 - PGA1_262p01520 0.43 +0.3 166,972 + PGA1_262p01520 0.45 -0.8 167,015 - PGA1_262p01520 0.48 -0.3 167,104 - PGA1_262p01520 0.56 -0.3 167,216 + PGA1_262p01520 0.65 -1.4 167,476 + PGA1_262p01520 0.85 -0.0 167,513 + PGA1_262p01520 0.88 -0.9 167,520 - PGA1_262p01520 0.89 +0.3 167,628 + +0.2 167,628 + -0.4 167,628 + -0.1 167,628 + -1.7 167,631 - +0.3 167,636 - -0.5 167,704 - +1.5 167,729 + +0.7 167,737 - -0.6 167,750 + +0.4 167,758 - +0.1 167,897 + -0.5 167,974 - +0.2 168,106 + PGA1_262p01530 0.15 -1.4 168,274 - PGA1_262p01530 0.27 +0.5 168,276 + PGA1_262p01530 0.27 +0.4 168,333 - PGA1_262p01530 0.31 +0.6 168,596 - PGA1_262p01530 0.49 +0.0 168,671 + PGA1_262p01530 0.54 +0.5 168,694 - PGA1_262p01530 0.55 -0.7 168,706 + PGA1_262p01530 0.56 +1.5 168,706 - PGA1_262p01530 0.56 -0.5 168,794 + PGA1_262p01530 0.62 +0.8 168,867 + PGA1_262p01530 0.67 +0.1 168,907 - PGA1_262p01530 0.70 +0.5 169,020 + PGA1_262p01530 0.78 -0.9 169,020 + PGA1_262p01530 0.78 -0.4 169,030 + PGA1_262p01530 0.78 +0.8 169,125 - PGA1_262p01530 0.85 +0.1 169,163 - PGA1_262p01530 0.87 +0.3 169,185 + PGA1_262p01530 0.89 +0.9 169,221 - +1.1 169,316 - -0.8 169,845 + PGA1_262p01540 0.47 +0.5 169,907 + PGA1_262p01540 0.55 +0.1 169,974 - PGA1_262p01540 0.63 +0.4 169,984 + PGA1_262p01540 0.64 +0.6 169,992 - PGA1_262p01540 0.65 -0.7 170,188 + PGA1_262p01540 0.89 +0.6 170,224 - +0.6 170,237 + -0.2 170,245 - +1.2 170,245 - -0.4 170,335 - -0.1
Or see this region's nucleotide sequence