Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01160 and PGA1_262p01165 are separated by 59 nucleotides PGA1_262p01165 and PGA1_262p01170 are separated by 118 nucleotides
PGA1_262p01160: PGA1_262p01160 - Uncharacterized iron-regulated membrane protein, at 127,740 to 129,128
_262p01160
PGA1_262p01165: PGA1_262p01165 - hypothetical protein, at 129,188 to 129,568
_262p01165
PGA1_262p01170: PGA1_262p01170 - putative nnrS protein, at 129,687 to 130,910
_262p01170
Position (kb) 129
130 Strain fitness (log2 ratio) -2
-1
0
1 at 128.410 kb on - strand, within PGA1_262p01160 at 128.503 kb on + strand, within PGA1_262p01160 at 128.574 kb on - strand, within PGA1_262p01160 at 128.762 kb on - strand, within PGA1_262p01160 at 128.773 kb on - strand, within PGA1_262p01160 at 128.907 kb on - strand, within PGA1_262p01160 at 129.123 kb on + strand at 129.124 kb on + strand at 129.167 kb on + strand at 129.176 kb on - strand at 129.190 kb on + strand at 129.238 kb on + strand, within PGA1_262p01165 at 129.371 kb on - strand, within PGA1_262p01165 at 129.516 kb on - strand, within PGA1_262p01165 at 129.516 kb on - strand, within PGA1_262p01165 at 129.582 kb on - strand at 129.643 kb on - strand at 129.735 kb on - strand at 129.740 kb on - strand at 129.740 kb on - strand at 129.783 kb on - strand at 129.802 kb on - strand at 130.443 kb on + strand, within PGA1_262p01170 at 130.493 kb on + strand, within PGA1_262p01170 at 130.504 kb on + strand, within PGA1_262p01170
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 128,410 - PGA1_262p01160 0.48 +0.5 128,503 + PGA1_262p01160 0.55 +0.3 128,574 - PGA1_262p01160 0.60 +0.8 128,762 - PGA1_262p01160 0.74 +1.0 128,773 - PGA1_262p01160 0.74 -0.4 128,907 - PGA1_262p01160 0.84 +0.8 129,123 + -0.4 129,124 + +1.4 129,167 + -0.3 129,176 - +0.3 129,190 + -1.8 129,238 + PGA1_262p01165 0.13 +0.5 129,371 - PGA1_262p01165 0.48 +0.5 129,516 - PGA1_262p01165 0.86 +0.2 129,516 - PGA1_262p01165 0.86 +0.2 129,582 - -1.0 129,643 - +0.1 129,735 - -2.1 129,740 - +0.1 129,740 - +0.1 129,783 - +0.8 129,802 - -0.2 130,443 + PGA1_262p01170 0.62 +0.3 130,493 + PGA1_262p01170 0.66 -0.5 130,504 + PGA1_262p01170 0.67 -0.2
Or see this region's nucleotide sequence