Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00880 and PGA1_262p00890 are separated by 0 nucleotides PGA1_262p00890 and PGA1_262p00900 overlap by 4 nucleotides PGA1_262p00900 and PGA1_262p00910 overlap by 4 nucleotides PGA1_262p00910 and PGA1_262p00920 are separated by 83 nucleotides
PGA1_262p00880: PGA1_262p00880 - ABC transporter, integral inner membrane component, at 98,504 to 99,547
_262p00880
PGA1_262p00890: PGA1_262p00890 - ABC transporter, integral inner membrane component, at 99,548 to 100,357
_262p00890
PGA1_262p00900: PGA1_262p00900 - ABC transporter, ATP-binding protein, at 100,354 to 101,850
_262p00900
PGA1_262p00910: PGA1_262p00910 - putative cation transort protein, at 101,847 to 102,404
_262p00910
PGA1_262p00920: PGA1_262p00920 - Membrane proteins related to metalloendopeptidases, at 102,488 to 103,174
_262p00920
Position (kb) 100
101
102 Strain fitness (log2 ratio) -2
-1
0
1 at 99.356 kb on + strand, within PGA1_262p00880 at 99.356 kb on + strand, within PGA1_262p00880 at 99.364 kb on - strand, within PGA1_262p00880 at 99.369 kb on - strand, within PGA1_262p00880 at 99.789 kb on + strand, within PGA1_262p00890 at 99.955 kb on + strand, within PGA1_262p00890 at 100.409 kb on - strand at 100.667 kb on + strand, within PGA1_262p00900 at 100.934 kb on + strand, within PGA1_262p00900 at 101.715 kb on - strand at 101.734 kb on + strand at 101.891 kb on + strand at 101.891 kb on + strand at 101.958 kb on - strand, within PGA1_262p00910 at 102.064 kb on + strand, within PGA1_262p00910 at 102.323 kb on - strand, within PGA1_262p00910 at 102.344 kb on + strand, within PGA1_262p00910 at 102.352 kb on - strand at 102.406 kb on + strand at 102.532 kb on - strand at 102.532 kb on - strand at 102.648 kb on + strand, within PGA1_262p00920 at 102.726 kb on + strand, within PGA1_262p00920 at 102.737 kb on + strand, within PGA1_262p00920 at 102.745 kb on - strand, within PGA1_262p00920
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 99,356 + PGA1_262p00880 0.82 -1.9 99,356 + PGA1_262p00880 0.82 -0.2 99,364 - PGA1_262p00880 0.82 -0.3 99,369 - PGA1_262p00880 0.83 +0.5 99,789 + PGA1_262p00890 0.30 +1.1 99,955 + PGA1_262p00890 0.50 +0.6 100,409 - -1.3 100,667 + PGA1_262p00900 0.21 -1.5 100,934 + PGA1_262p00900 0.39 -1.7 101,715 - +0.9 101,734 + +0.1 101,891 + -0.1 101,891 + +0.8 101,958 - PGA1_262p00910 0.20 +0.5 102,064 + PGA1_262p00910 0.39 -0.3 102,323 - PGA1_262p00910 0.85 +1.1 102,344 + PGA1_262p00910 0.89 +0.5 102,352 - +0.4 102,406 + +0.2 102,532 - +0.5 102,532 - +0.5 102,648 + PGA1_262p00920 0.23 +0.2 102,726 + PGA1_262p00920 0.35 +0.1 102,737 + PGA1_262p00920 0.36 +1.0 102,745 - PGA1_262p00920 0.37 +0.5
Or see this region's nucleotide sequence