Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00800

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00780 and PGA1_262p00790 are separated by 97 nucleotidesPGA1_262p00790 and PGA1_262p00800 are separated by 103 nucleotidesPGA1_262p00800 and PGA1_262p00810 are separated by 34 nucleotidesPGA1_262p00810 and PGA1_262p00820 are separated by 79 nucleotides PGA1_262p00780: PGA1_262p00780 - NAD dependent epimerase/dehydratase, at 87,330 to 88,439 _262p00780 PGA1_262p00790: PGA1_262p00790 - hypothetical protein, at 88,537 to 88,668 _262p00790 PGA1_262p00800: PGA1_262p00800 - phenylacetic acid degradation protein PaaZ, at 88,772 to 90,904 _262p00800 PGA1_262p00810: PGA1_262p00810 - putative flavoprotein, HFCD family, at 90,939 to 91,508 _262p00810 PGA1_262p00820: PGA1_262p00820 - hypothetical protein, at 91,588 to 92,028 _262p00820 Position (kb) 88 89 90 91Strain fitness (log2 ratio) -2 -1 0 1at 87.823 kb on + strand, within PGA1_262p00780at 87.833 kb on + strand, within PGA1_262p00780at 87.911 kb on + strand, within PGA1_262p00780at 87.954 kb on + strand, within PGA1_262p00780at 87.973 kb on + strand, within PGA1_262p00780at 88.026 kb on - strand, within PGA1_262p00780at 88.026 kb on - strand, within PGA1_262p00780at 88.052 kb on + strand, within PGA1_262p00780at 88.441 kb on + strandat 88.721 kb on + strandat 88.764 kb on + strandat 88.764 kb on + strandat 88.772 kb on - strandat 88.772 kb on - strandat 88.861 kb on - strandat 88.879 kb on + strandat 88.892 kb on - strandat 88.903 kb on - strandat 88.943 kb on + strandat 88.988 kb on + strand, within PGA1_262p00800at 89.033 kb on + strand, within PGA1_262p00800at 89.071 kb on + strand, within PGA1_262p00800at 89.110 kb on + strand, within PGA1_262p00800at 89.122 kb on + strand, within PGA1_262p00800at 89.132 kb on + strand, within PGA1_262p00800at 89.141 kb on + strand, within PGA1_262p00800at 89.159 kb on + strand, within PGA1_262p00800at 89.232 kb on + strand, within PGA1_262p00800at 89.240 kb on - strand, within PGA1_262p00800at 89.240 kb on - strand, within PGA1_262p00800at 89.438 kb on + strand, within PGA1_262p00800at 89.485 kb on + strand, within PGA1_262p00800at 89.612 kb on - strand, within PGA1_262p00800at 89.678 kb on - strand, within PGA1_262p00800at 89.731 kb on + strand, within PGA1_262p00800at 89.840 kb on + strand, within PGA1_262p00800at 89.888 kb on + strand, within PGA1_262p00800at 89.947 kb on - strand, within PGA1_262p00800at 90.038 kb on + strand, within PGA1_262p00800at 90.057 kb on + strand, within PGA1_262p00800at 90.076 kb on + strand, within PGA1_262p00800at 90.194 kb on - strand, within PGA1_262p00800at 90.209 kb on + strand, within PGA1_262p00800at 90.224 kb on - strand, within PGA1_262p00800at 90.226 kb on + strand, within PGA1_262p00800at 90.234 kb on - strand, within PGA1_262p00800at 90.234 kb on - strand, within PGA1_262p00800at 90.345 kb on - strand, within PGA1_262p00800at 90.403 kb on + strand, within PGA1_262p00800at 90.533 kb on + strand, within PGA1_262p00800at 90.548 kb on + strand, within PGA1_262p00800at 90.548 kb on + strand, within PGA1_262p00800at 90.556 kb on - strand, within PGA1_262p00800at 90.596 kb on + strand, within PGA1_262p00800at 90.596 kb on + strand, within PGA1_262p00800at 90.599 kb on - strand, within PGA1_262p00800at 90.599 kb on - strand, within PGA1_262p00800at 90.699 kb on + strandat 90.745 kb on + strandat 90.798 kb on - strandat 90.832 kb on + strandat 90.840 kb on - strandat 90.949 kb on - strandat 90.996 kb on - strand, within PGA1_262p00810at 91.042 kb on + strand, within PGA1_262p00810at 91.042 kb on + strand, within PGA1_262p00810at 91.050 kb on - strand, within PGA1_262p00810at 91.061 kb on + strand, within PGA1_262p00810at 91.069 kb on - strand, within PGA1_262p00810at 91.069 kb on - strand, within PGA1_262p00810at 91.147 kb on - strand, within PGA1_262p00810at 91.265 kb on - strand, within PGA1_262p00810at 91.293 kb on + strand, within PGA1_262p00810at 91.375 kb on + strand, within PGA1_262p00810at 91.569 kb on - strandat 91.585 kb on + strandat 91.791 kb on - strand, within PGA1_262p00820at 91.871 kb on + strand, within PGA1_262p00820

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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87,823 + PGA1_262p00780 0.44 -1.4
87,833 + PGA1_262p00780 0.45 -1.7
87,911 + PGA1_262p00780 0.52 +0.2
87,954 + PGA1_262p00780 0.56 -1.3
87,973 + PGA1_262p00780 0.58 -0.0
88,026 - PGA1_262p00780 0.63 -0.2
88,026 - PGA1_262p00780 0.63 -0.1
88,052 + PGA1_262p00780 0.65 -1.0
88,441 + +1.1
88,721 + +1.3
88,764 + +0.2
88,764 + +0.3
88,772 - +0.3
88,772 - +0.7
88,861 - +0.8
88,879 + -0.2
88,892 - -0.1
88,903 - +0.1
88,943 + -1.1
88,988 + PGA1_262p00800 0.10 +0.5
89,033 + PGA1_262p00800 0.12 -0.3
89,071 + PGA1_262p00800 0.14 +1.5
89,110 + PGA1_262p00800 0.16 -0.3
89,122 + PGA1_262p00800 0.16 +0.5
89,132 + PGA1_262p00800 0.17 +0.1
89,141 + PGA1_262p00800 0.17 +0.6
89,159 + PGA1_262p00800 0.18 +0.5
89,232 + PGA1_262p00800 0.22 +0.3
89,240 - PGA1_262p00800 0.22 -0.1
89,240 - PGA1_262p00800 0.22 +1.0
89,438 + PGA1_262p00800 0.31 -0.1
89,485 + PGA1_262p00800 0.33 +0.2
89,612 - PGA1_262p00800 0.39 +1.1
89,678 - PGA1_262p00800 0.42 +0.6
89,731 + PGA1_262p00800 0.45 +0.2
89,840 + PGA1_262p00800 0.50 +1.3
89,888 + PGA1_262p00800 0.52 +0.6
89,947 - PGA1_262p00800 0.55 +0.3
90,038 + PGA1_262p00800 0.59 -2.0
90,057 + PGA1_262p00800 0.60 +1.2
90,076 + PGA1_262p00800 0.61 +0.6
90,194 - PGA1_262p00800 0.67 +0.8
90,209 + PGA1_262p00800 0.67 +1.0
90,224 - PGA1_262p00800 0.68 +0.6
90,226 + PGA1_262p00800 0.68 -0.2
90,234 - PGA1_262p00800 0.69 +1.6
90,234 - PGA1_262p00800 0.69 +0.7
90,345 - PGA1_262p00800 0.74 +0.3
90,403 + PGA1_262p00800 0.76 +1.6
90,533 + PGA1_262p00800 0.83 +0.6
90,548 + PGA1_262p00800 0.83 +0.3
90,548 + PGA1_262p00800 0.83 +0.5
90,556 - PGA1_262p00800 0.84 +0.6
90,596 + PGA1_262p00800 0.86 +0.9
90,596 + PGA1_262p00800 0.86 +0.8
90,599 - PGA1_262p00800 0.86 +0.4
90,599 - PGA1_262p00800 0.86 -0.7
90,699 + +0.0
90,745 + -0.6
90,798 - +0.5
90,832 + -0.2
90,840 - +0.4
90,949 - -1.0
90,996 - PGA1_262p00810 0.10 -0.2
91,042 + PGA1_262p00810 0.18 -0.4
91,042 + PGA1_262p00810 0.18 -0.9
91,050 - PGA1_262p00810 0.19 -0.2
91,061 + PGA1_262p00810 0.21 +0.8
91,069 - PGA1_262p00810 0.23 -0.1
91,069 - PGA1_262p00810 0.23 -0.6
91,147 - PGA1_262p00810 0.36 +0.3
91,265 - PGA1_262p00810 0.57 +0.2
91,293 + PGA1_262p00810 0.62 +1.7
91,375 + PGA1_262p00810 0.76 +0.9
91,569 - +0.9
91,585 + -0.4
91,791 - PGA1_262p00820 0.46 -0.2
91,871 + PGA1_262p00820 0.64 -0.8

Or see this region's nucleotide sequence