Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00560 and PGA1_262p00570 are separated by 27 nucleotides PGA1_262p00570 and PGA1_262p00580 are separated by 26 nucleotides
PGA1_262p00560: PGA1_262p00560 - uracil DNA glycosylase-like protein, at 65,033 to 66,478
_262p00560
PGA1_262p00570: PGA1_262p00570 - hypothetical protein, at 66,506 to 66,763
_262p00570
PGA1_262p00580: PGA1_262p00580 - putative polysaccharide biosynthesis/export protein, at 66,790 to 68,163
_262p00580
Position (kb) 66
67 Strain fitness (log2 ratio) -1
0
1 at 65.527 kb on - strand, within PGA1_262p00560 at 65.596 kb on + strand, within PGA1_262p00560 at 65.619 kb on - strand, within PGA1_262p00560 at 65.681 kb on + strand, within PGA1_262p00560 at 66.019 kb on - strand, within PGA1_262p00560 at 66.035 kb on - strand, within PGA1_262p00560 at 66.311 kb on + strand, within PGA1_262p00560 at 66.365 kb on - strand at 66.532 kb on + strand, within PGA1_262p00570 at 66.540 kb on - strand, within PGA1_262p00570 at 66.540 kb on - strand, within PGA1_262p00570 at 66.542 kb on + strand, within PGA1_262p00570 at 66.542 kb on + strand, within PGA1_262p00570 at 66.661 kb on + strand, within PGA1_262p00570 at 66.692 kb on - strand, within PGA1_262p00570 at 66.751 kb on + strand at 66.754 kb on - strand at 66.761 kb on + strand at 66.844 kb on - strand at 66.924 kb on + strand at 66.932 kb on - strand, within PGA1_262p00580 at 66.932 kb on - strand, within PGA1_262p00580 at 67.007 kb on + strand, within PGA1_262p00580 at 67.007 kb on + strand, within PGA1_262p00580 at 67.055 kb on + strand, within PGA1_262p00580 at 67.063 kb on - strand, within PGA1_262p00580 at 67.135 kb on + strand, within PGA1_262p00580 at 67.137 kb on + strand, within PGA1_262p00580 at 67.197 kb on + strand, within PGA1_262p00580 at 67.205 kb on - strand, within PGA1_262p00580 at 67.234 kb on + strand, within PGA1_262p00580 at 67.240 kb on - strand, within PGA1_262p00580 at 67.368 kb on - strand, within PGA1_262p00580 at 67.368 kb on - strand, within PGA1_262p00580 at 67.738 kb on - strand, within PGA1_262p00580
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 65,527 - PGA1_262p00560 0.34 -0.1 65,596 + PGA1_262p00560 0.39 +0.1 65,619 - PGA1_262p00560 0.41 +0.5 65,681 + PGA1_262p00560 0.45 -0.6 66,019 - PGA1_262p00560 0.68 -0.0 66,035 - PGA1_262p00560 0.69 +0.5 66,311 + PGA1_262p00560 0.88 -0.5 66,365 - -0.6 66,532 + PGA1_262p00570 0.10 +0.6 66,540 - PGA1_262p00570 0.13 +1.1 66,540 - PGA1_262p00570 0.13 +0.6 66,542 + PGA1_262p00570 0.14 +0.3 66,542 + PGA1_262p00570 0.14 -0.2 66,661 + PGA1_262p00570 0.60 -0.8 66,692 - PGA1_262p00570 0.72 +0.3 66,751 + +1.3 66,754 - +0.7 66,761 + +0.7 66,844 - -0.2 66,924 + +0.4 66,932 - PGA1_262p00580 0.10 +0.4 66,932 - PGA1_262p00580 0.10 +0.5 67,007 + PGA1_262p00580 0.16 -0.9 67,007 + PGA1_262p00580 0.16 -0.7 67,055 + PGA1_262p00580 0.19 -0.8 67,063 - PGA1_262p00580 0.20 +0.1 67,135 + PGA1_262p00580 0.25 -0.0 67,137 + PGA1_262p00580 0.25 -0.7 67,197 + PGA1_262p00580 0.30 -1.0 67,205 - PGA1_262p00580 0.30 -0.0 67,234 + PGA1_262p00580 0.32 +1.6 67,240 - PGA1_262p00580 0.33 -0.8 67,368 - PGA1_262p00580 0.42 +0.2 67,368 - PGA1_262p00580 0.42 +0.1 67,738 - PGA1_262p00580 0.69 +0.0
Or see this region's nucleotide sequence